Wall clock time and date at job start Tue Mar 31 2020 23:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99784 * 2 1 4 4 C 1.50704 * 109.46795 * 293.95195 * 3 2 1 5 5 C 1.38305 * 119.93232 * 269.72625 * 4 3 2 6 6 C 1.38101 * 120.06755 * 179.72713 * 5 4 3 7 7 C 1.38879 * 119.93040 * 0.57274 * 6 5 4 8 8 O 1.35750 * 120.06828 * 179.67916 * 7 6 5 9 9 C 1.34831 * 116.99797 * 174.48194 * 8 7 6 10 10 H 1.08001 * 120.00071 * 5.06489 * 9 8 7 11 11 C 1.38651 * 120.00188 * 185.05811 * 9 8 7 12 12 N 1.31555 * 119.99645 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00331 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46737 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47004 * 120.00047 * 13 11 9 16 16 H 1.48500 * 109.47087 * 240.00135 * 13 11 9 17 17 C 1.38887 * 119.86134 * 359.70188 * 7 6 5 18 18 C 1.38094 * 119.93108 * 0.02562 * 17 7 6 19 19 C 1.46902 * 111.00300 * 123.94988 * 2 1 3 20 20 C 1.52580 * 109.24304 * 305.49358 * 19 2 1 21 21 C 1.52967 * 110.02615 * 190.29128 * 20 19 2 22 22 S 1.81677 * 108.97030 * 296.31632 * 21 20 19 23 23 O 1.42100 * 108.66413 * 299.96892 * 22 21 20 24 24 O 1.42100 * 108.74569 * 168.65636 * 22 21 20 25 25 C 1.81674 * 101.30518 * 54.29862 * 22 21 20 26 26 C 1.52588 * 109.23705 * 66.60681 * 19 2 1 27 27 H 1.08996 * 109.47095 * 296.04837 * 1 2 3 28 28 H 1.09001 * 109.46747 * 56.04996 * 1 2 3 29 29 H 1.08996 * 109.46653 * 176.04514 * 1 2 3 30 30 H 1.08995 * 109.47316 * 53.95165 * 3 2 1 31 31 H 1.09002 * 109.47048 * 173.95589 * 3 2 1 32 32 H 1.08003 * 119.96487 * 359.97438 * 5 4 3 33 33 H 1.07996 * 120.03035 * 180.27103 * 6 5 4 34 34 H 0.97005 * 120.00424 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.03072 * 179.97438 * 17 7 6 36 36 H 1.07998 * 119.96514 * 180.02562 * 18 17 7 37 37 H 1.08999 * 109.23674 * 186.04650 * 19 2 1 38 38 H 1.09008 * 109.38406 * 310.39964 * 20 19 2 39 39 H 1.09003 * 109.38671 * 70.08266 * 20 19 2 40 40 H 1.08994 * 109.56373 * 176.47123 * 21 20 19 41 41 H 1.08998 * 109.64247 * 56.20589 * 21 20 19 42 42 H 1.08998 * 109.54369 * 185.84169 * 25 22 21 43 43 H 1.09000 * 109.62669 * 65.60681 * 25 22 21 44 44 H 1.09001 * 109.38779 * 289.90964 * 26 19 2 45 45 H 1.08997 * 109.38895 * 49.70469 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 2.4979 1.9688 -2.3780 6 6 2.1696 2.5821 -3.5710 7 6 0.9788 3.2881 -3.6824 8 8 0.6563 3.8975 -4.8518 9 6 -0.5630 4.4678 -4.9288 10 1 -1.2008 4.4986 -4.0577 11 6 -0.9981 5.0150 -6.1262 12 7 -0.2213 4.9772 -7.1872 13 14 -2.6871 5.8059 -6.2327 14 1 -3.3584 5.7191 -4.9110 15 1 -2.5424 7.2315 -6.6224 16 1 -3.5032 5.0951 -7.2496 17 6 0.1189 3.3697 -2.5948 18 6 0.4503 2.7495 -1.4063 19 6 1.9955 -0.7659 1.1376 20 6 1.3949 -0.2226 2.4307 21 6 2.1150 -0.8272 3.6373 22 16 1.8334 -2.6219 3.6548 23 8 0.4360 -2.8620 3.7496 24 8 2.7066 -3.2119 4.6080 25 6 2.3914 -3.0862 1.9895 26 6 1.6417 -2.2393 0.9586 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3632 -1.0252 -0.0709 30 1 1.5611 1.9274 0.8308 31 1 3.0797 1.3445 0.1082 32 1 3.4263 1.4240 -2.2891 33 1 2.8404 2.5168 -4.4148 34 1 -0.5255 5.3603 -8.0249 35 1 -0.8076 3.9183 -2.6783 36 1 -0.2181 2.8122 -0.5604 37 1 3.0797 -0.6584 1.1720 38 1 1.5032 0.8619 2.4522 39 1 0.3366 -0.4799 2.4743 40 1 1.7229 -0.3875 4.5543 41 1 3.1839 -0.6265 3.5645 42 1 2.1823 -4.1418 1.8160 43 1 3.4628 -2.9070 1.8991 44 1 0.5682 -2.3726 1.0928 45 1 1.9235 -2.5599 -0.0444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137120354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:44 Heat of formation + Delta-G solvation = -90.399976 kcal Electronic energy + Delta-G solvation = -27054.106360 eV Core-core repulsion = 23163.736657 eV Total energy + Delta-G solvation = -3890.369703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.92670 -40.07111 -38.30019 -37.91663 -37.04686 -35.25508 -34.22258 -32.76276 -31.76477 -31.33175 -28.16584 -27.83003 -26.93805 -24.71058 -24.13889 -23.52553 -21.87761 -20.79502 -19.81465 -19.72658 -18.79116 -17.88816 -17.32061 -17.03504 -16.69315 -16.51893 -16.40004 -16.14203 -15.64527 -15.45542 -15.26513 -15.05403 -14.73434 -14.56520 -14.33697 -14.16113 -13.80723 -13.67026 -13.52615 -13.37587 -13.21253 -13.05364 -12.93382 -12.78731 -12.61963 -12.51837 -12.45092 -12.34688 -12.12386 -12.10952 -11.86830 -11.80695 -11.43093 -11.13598 -10.91577 -10.78866 -9.71504 -9.19958 -8.83124 -8.46477 -6.14193 -0.88486 0.65022 0.72149 1.34846 1.42986 1.52861 1.79207 2.17726 2.68563 2.77987 2.94070 3.13411 3.35476 3.56659 3.61374 3.64972 3.81694 3.93309 4.06997 4.09023 4.11015 4.25560 4.32325 4.34914 4.42766 4.56300 4.64648 4.67638 4.71763 4.77664 4.84710 4.87320 4.92197 4.99007 5.13924 5.17445 5.17830 5.23394 5.28888 5.35722 5.62398 5.75453 5.84208 6.04910 6.13987 6.20233 6.31335 6.98730 7.81127 8.77102 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.002031 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.847217 B =13784.674736 C =14138.599907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.531 5.531 3 C 0.109 3.891 4 C -0.151 4.151 5 C -0.046 4.046 6 C -0.208 4.208 7 C 0.112 3.888 8 O -0.235 6.235 9 C -0.410 4.410 10 H 0.100 0.900 11 C -0.025 4.025 12 N -0.921 5.921 13 Si 1.018 2.982 14 H -0.252 1.252 15 H -0.268 1.268 16 H -0.269 1.269 17 C -0.245 4.245 18 C -0.061 4.061 19 C 0.063 3.937 20 C -0.151 4.151 21 C -0.580 4.580 22 S 2.409 3.591 23 O -0.984 6.984 24 O -0.988 6.988 25 C -0.581 4.581 26 C -0.107 4.107 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.272 0.728 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.076 0.924 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 -13.011 22.165 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.254 5.254 3 C -0.017 4.017 4 C -0.152 4.152 5 C -0.064 4.064 6 C -0.227 4.227 7 C 0.062 3.938 8 O -0.142 6.142 9 C -0.486 4.486 10 H 0.118 0.882 11 C -0.222 4.222 12 N -0.560 5.560 13 Si 0.837 3.163 14 H -0.175 1.175 15 H -0.193 1.193 16 H -0.194 1.194 17 C -0.264 4.264 18 C -0.079 4.079 19 C -0.045 4.045 20 C -0.191 4.191 21 C -0.712 4.712 22 S 2.597 3.403 23 O -0.981 6.981 24 O -0.985 6.985 25 C -0.713 4.713 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.166 0.834 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.162 0.838 41 H 0.182 0.818 42 H 0.165 0.835 43 H 0.182 0.818 44 H 0.095 0.905 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.770 -13.715 22.031 26.585 hybrid contribution -0.890 1.394 -0.548 1.743 sum 4.880 -12.321 21.482 25.241 Atomic orbital electron populations 1.22589 0.87836 1.02692 1.01019 1.62200 1.08096 1.13697 1.41357 1.20941 1.01147 0.87276 0.92344 1.19596 0.95611 1.02941 0.97041 1.20866 0.99495 0.95762 0.90317 1.20484 0.96946 1.04891 1.00379 1.19971 0.95043 0.92155 0.86662 1.83941 1.34958 1.63641 1.31666 1.21823 0.91485 1.36661 0.98666 0.88228 1.26573 1.04185 0.97908 0.93529 1.70189 1.38934 1.45044 1.01833 0.84539 0.74621 0.77670 0.79440 1.17513 1.19348 1.19423 1.21209 1.01996 1.08502 0.94715 1.20920 0.96331 0.94971 0.95683 1.22076 1.01995 0.93009 0.87439 1.22091 1.00771 1.03885 0.92366 1.29985 1.12462 1.21565 1.07220 1.07986 0.74345 0.79613 0.78371 1.93536 1.32624 1.85019 1.86927 1.93544 1.68272 1.76472 1.60226 1.30037 1.12997 1.10827 1.17451 1.21334 1.00368 0.92332 1.00529 0.93947 0.92499 0.90686 0.92797 0.88127 0.83394 0.87276 0.91906 0.86874 0.84864 0.86362 0.88370 0.90172 0.83799 0.81812 0.83508 0.81794 0.90543 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.46 127.69 1.08 1.20 16 2 N -0.53 -8.53 4.69 -903.23 -4.24 -12.77 16 3 C 0.11 1.89 4.69 85.56 0.40 2.29 16 4 C -0.15 -4.11 4.89 -19.83 -0.10 -4.21 16 5 C -0.05 -1.42 9.69 22.25 0.22 -1.20 16 6 C -0.21 -8.57 9.99 22.39 0.22 -8.34 16 7 C 0.11 5.48 6.65 22.58 0.15 5.63 16 8 O -0.24 -14.13 9.76 -22.75 -0.22 -14.35 16 9 C -0.41 -23.84 9.49 67.92 0.64 -23.20 16 10 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 11 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 12 N -0.92 -56.62 13.67 21.61 0.30 -56.33 16 13 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 14 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 15 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 17 C -0.24 -10.33 9.17 22.39 0.21 -10.13 16 18 C -0.06 -1.92 7.89 22.25 0.18 -1.74 16 19 C 0.06 0.61 1.94 44.64 0.09 0.69 16 20 C -0.15 -1.30 4.06 30.44 0.12 -1.18 16 21 C -0.58 -3.37 6.35 71.97 0.46 -2.91 16 22 S 2.41 28.51 5.30 -56.49 -0.30 28.21 16 23 O -0.98 -20.27 17.94 -127.38 -2.28 -22.55 16 24 O -0.99 -19.23 18.11 -127.38 -2.31 -21.54 16 25 C -0.58 -3.55 6.35 71.99 0.46 -3.10 16 26 C -0.11 -1.01 4.67 30.47 0.14 -0.86 16 27 H 0.04 0.65 6.43 -2.39 -0.02 0.63 16 28 H 0.06 1.33 5.89 -2.39 -0.01 1.32 16 29 H 0.07 1.24 6.70 -2.39 -0.02 1.23 16 30 H 0.05 0.80 6.75 -2.39 -0.02 0.79 16 31 H 0.10 1.33 7.86 -2.39 -0.02 1.31 16 32 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 35 H 0.11 4.95 5.64 -2.91 -0.02 4.93 16 36 H 0.13 3.40 7.98 -2.91 -0.02 3.37 16 37 H 0.12 0.58 7.87 -2.39 -0.02 0.56 16 38 H 0.10 0.77 6.46 -2.38 -0.02 0.75 16 39 H 0.08 0.86 6.79 -2.39 -0.02 0.84 16 40 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.08 0.86 6.91 -2.39 -0.02 0.84 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -83.85 365.73 -1.29 -85.14 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.00 Total: 17.32 kcal Atomic # 6 Polarization: -52.72 SS G_CDS: 4.73 Total: -47.99 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -3.94 Total: -69.10 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -4.81 Total: -58.44 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 28.51 SS G_CDS: -0.30 Total: 28.21 kcal Total: -83.85 -1.29 -85.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137120354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.257 kcal (2) G-P(sol) polarization free energy of solvation -83.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds