Wall clock time and date at job start Tue Mar 31 2020 23:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35667 * 117.00051 * 2 1 4 4 C 1.39124 * 119.88355 * 179.97438 * 3 2 1 5 5 C 1.37106 * 120.10751 * 180.27642 * 4 3 2 6 6 C 1.40051 * 119.88668 * 359.47102 * 5 4 3 7 7 C 1.47191 * 120.11552 * 180.23513 * 6 5 4 8 8 O 1.21552 * 120.00120 * 174.84820 * 7 6 5 9 9 C 1.48440 * 119.99408 * 354.85057 * 7 6 5 10 10 O 1.21558 * 120.00278 * 84.18201 * 9 7 6 11 11 N 1.34789 * 119.99821 * 264.17856 * 9 7 6 12 12 C 1.35781 * 119.99620 * 5.80906 * 11 9 7 13 13 H 1.08000 * 120.00533 * 323.12230 * 12 11 9 14 14 C 1.39895 * 119.99853 * 143.12506 * 12 11 9 15 15 N 1.30833 * 119.99623 * 339.74731 * 14 12 11 16 16 Si 1.86797 * 120.00187 * 159.74263 * 14 12 11 17 17 H 1.48501 * 109.46995 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47250 * 119.99930 * 16 14 12 19 19 H 1.48494 * 109.46958 * 240.00371 * 16 14 12 20 20 C 1.46501 * 119.99734 * 185.80730 * 11 9 7 21 21 C 1.50699 * 109.46703 * 85.20126 * 20 11 9 22 22 C 1.38241 * 119.99975 * 269.96394 * 21 20 11 23 23 C 1.38234 * 120.00092 * 179.76933 * 22 21 20 24 24 C 1.38241 * 119.99891 * 0.50832 * 23 22 21 25 25 C 1.38240 * 119.99820 * 359.74731 * 24 23 22 26 26 C 1.38231 * 120.00227 * 90.24321 * 21 20 11 27 27 C 1.40064 * 119.77965 * 0.54597 * 6 5 4 28 28 C 1.37100 * 119.88204 * 359.71336 * 27 6 5 29 29 H 1.09002 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47245 * 300.00393 * 1 2 3 31 31 H 1.09005 * 109.47188 * 60.00196 * 1 2 3 32 32 H 1.07998 * 119.94988 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.05720 * 179.72373 * 5 4 3 34 34 H 0.96996 * 119.99954 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.46585 * 205.19648 * 20 11 9 36 36 H 1.08998 * 109.47150 * 325.20167 * 20 11 9 37 37 H 1.08003 * 119.99663 * 359.97438 * 22 21 20 38 38 H 1.07996 * 120.00369 * 180.23402 * 23 22 21 39 39 H 1.07995 * 120.00271 * 179.72136 * 24 23 22 40 40 H 1.07997 * 119.99685 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.00256 * 359.97438 * 26 21 20 42 42 H 1.07996 * 120.05777 * 179.68337 * 27 6 5 43 43 H 1.08000 * 119.94187 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4344 1.2788 0.0005 5 6 4.0616 2.4979 0.0063 6 6 3.3011 3.6740 0.0004 7 6 3.9693 4.9855 0.0012 8 8 3.3115 6.0028 -0.0984 9 6 5.4465 5.0657 0.1237 10 8 6.1456 4.9475 -0.8636 11 7 6.0126 5.2697 1.3299 12 6 5.2420 5.2840 2.4477 13 1 4.2530 5.7167 2.4164 14 6 5.7292 4.7382 3.6402 15 7 6.7178 3.8818 3.6116 16 14 4.9684 5.2325 5.2730 17 1 3.8741 6.2075 5.0343 18 1 4.4197 4.0289 5.9480 19 1 6.0061 5.8535 6.1348 20 6 7.4592 5.4758 1.4345 21 6 7.7771 6.9309 1.2049 22 6 8.0385 7.3879 -0.0734 23 6 8.3253 8.7235 -0.2847 24 6 8.3612 9.6002 0.7835 25 6 8.1051 9.1421 2.0624 26 6 7.8130 7.8075 2.2730 27 6 1.9026 3.5981 0.0002 28 6 1.2849 2.3741 -0.0001 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 4.0199 0.3713 0.0014 33 1 5.1403 2.5513 0.0112 34 1 7.0554 3.5031 4.4383 35 1 7.7969 5.1826 2.4286 36 1 7.9678 4.8700 0.6846 37 1 8.0152 6.7020 -0.9073 38 1 8.5258 9.0813 -1.2838 39 1 8.5898 10.6428 0.6190 40 1 8.1335 9.8270 2.8970 41 1 7.6129 7.4498 3.2723 42 1 1.3118 4.5021 0.0008 43 1 0.2066 2.3144 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183358141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:28 Heat of formation + Delta-G solvation = -42.129122 kcal Electronic energy + Delta-G solvation = -28954.785487 eV Core-core repulsion = 24931.065014 eV Total energy + Delta-G solvation = -4023.720473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.26085 -39.50187 -38.59801 -37.40317 -36.69365 -35.08771 -32.08663 -31.12523 -30.94603 -30.31416 -30.28600 -27.52724 -26.33048 -25.36952 -23.85381 -22.28565 -21.93979 -21.69921 -20.46973 -19.13371 -18.19712 -17.60536 -16.59039 -16.07743 -15.94057 -15.81037 -15.67973 -15.01584 -14.74272 -14.53243 -14.44812 -14.32470 -13.70109 -13.50519 -13.37054 -13.31851 -12.97029 -12.82675 -12.58743 -12.39926 -12.09838 -12.03491 -11.90943 -11.66809 -11.42910 -11.07632 -11.00498 -10.89263 -10.71197 -10.59111 -10.42225 -10.30959 -10.23308 -9.28755 -8.89420 -8.50384 -8.33941 -8.09440 -8.05969 -7.79114 -6.60266 -4.24283 1.02250 1.59342 1.90560 1.98867 2.78203 2.98460 3.13279 3.18810 3.20860 3.49762 3.90446 4.07007 4.23117 4.45998 4.78993 4.81378 4.94974 5.01911 5.06211 5.29534 5.33117 5.42113 5.45769 5.50626 5.56144 5.58735 5.80567 5.81992 5.92278 6.09028 6.15699 6.20042 6.34700 6.38843 6.49318 6.58246 6.68207 6.70903 6.84592 7.00261 7.02409 7.06577 7.26467 7.37769 7.38192 7.58624 7.65325 7.95139 8.16129 8.80768 9.16334 9.62990 10.41367 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.003793 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.523520 B = 7380.025866 C = 8539.418072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.151 3.849 4 C -0.164 4.164 5 C -0.005 4.005 6 C -0.183 4.183 7 C 0.428 3.572 8 O -0.453 6.453 9 C 0.439 3.561 10 O -0.582 6.582 11 N -0.399 5.399 12 C -0.356 4.356 13 H 0.090 0.910 14 C 0.057 3.943 15 N -0.843 5.843 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.275 1.275 20 C 0.144 3.856 21 C -0.084 4.084 22 C -0.102 4.102 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.096 4.096 27 C -0.021 4.021 28 C -0.227 4.227 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.275 0.725 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.134 0.866 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 -2.616 -2.321 6.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.106 3.894 4 C -0.183 4.183 5 C -0.023 4.023 6 C -0.185 4.185 7 C 0.303 3.697 8 O -0.327 6.327 9 C 0.226 3.774 10 O -0.469 6.469 11 N -0.115 5.115 12 C -0.484 4.484 13 H 0.108 0.892 14 C -0.152 4.152 15 N -0.478 5.478 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.200 1.200 20 C 0.021 3.979 21 C -0.085 4.085 22 C -0.121 4.121 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.115 4.115 27 C -0.039 4.039 28 C -0.246 4.246 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.086 0.914 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.152 0.848 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.095 -2.463 -2.686 6.264 hybrid contribution -0.675 0.392 1.039 1.300 sum -5.770 -2.071 -1.647 6.348 Atomic orbital electron populations 1.23073 0.78457 1.03807 1.01564 1.86017 1.21407 1.27247 1.88146 1.19369 0.92423 0.83932 0.93706 1.20243 0.91006 0.98861 1.08187 1.21215 1.00812 0.90370 0.89944 1.20278 0.93931 0.94580 1.09724 1.22087 0.89949 0.88024 0.69651 1.90546 1.67258 1.38018 1.36869 1.20277 0.88906 0.82770 0.85426 1.90669 1.62366 1.56122 1.37739 1.43009 1.06071 1.57821 1.04626 1.19414 1.00973 1.40113 0.87898 0.89203 1.25396 0.96423 0.93374 1.00002 1.69648 1.25834 1.23157 1.29151 0.86161 0.79756 0.79147 0.81630 1.18799 1.20336 1.20017 1.20535 0.82629 0.89457 1.05267 1.20562 0.97265 0.97698 0.92969 1.21297 0.98056 0.95576 0.97155 1.21062 1.01663 0.93856 0.98369 1.20991 1.01963 0.98927 0.93148 1.21050 1.01469 0.95765 0.96720 1.21107 0.98232 0.92967 0.99188 1.21000 0.93391 0.97543 0.91989 1.20971 0.99932 0.92057 1.11644 0.88337 0.92466 0.92542 0.84694 0.84003 0.91430 0.86410 0.91221 0.85644 0.86862 0.87021 0.86828 0.86151 0.84800 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.80 101.05 0.99 1.21 16 2 O -0.32 -4.09 10.48 -18.70 -0.20 -4.28 16 3 C 0.15 2.24 6.70 -38.93 -0.26 1.98 16 4 C -0.16 -2.63 9.95 -39.66 -0.39 -3.03 16 5 C -0.01 -0.09 9.43 -39.31 -0.37 -0.47 16 6 C -0.18 -3.61 5.88 -104.90 -0.62 -4.23 16 7 C 0.43 9.83 5.29 -31.75 -0.17 9.66 16 8 O -0.45 -10.91 17.11 5.32 0.09 -10.81 16 9 C 0.44 10.80 5.95 -12.05 -0.07 10.72 16 10 O -0.58 -14.88 15.99 5.32 0.08 -14.80 16 11 N -0.40 -9.75 2.49 -117.00 -0.29 -10.05 16 12 C -0.36 -8.85 8.70 -15.18 -0.13 -8.98 16 13 H 0.09 2.32 7.28 -52.49 -0.38 1.94 16 14 C 0.06 1.36 4.95 -17.36 -0.09 1.27 16 15 N -0.84 -20.39 11.39 55.54 0.63 -19.75 16 16 Si 0.91 18.76 29.60 -169.99 -5.03 13.73 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C 0.14 3.28 5.07 -5.19 -0.03 3.26 16 21 C -0.08 -1.77 5.42 -104.62 -0.57 -2.33 16 22 C -0.10 -2.04 9.60 -39.58 -0.38 -2.42 16 23 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 24 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 25 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 26 C -0.10 -1.88 9.70 -39.58 -0.38 -2.26 16 27 C -0.02 -0.35 9.57 -39.31 -0.38 -0.73 16 28 C -0.23 -3.22 8.99 -39.67 -0.36 -3.58 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 31 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 32 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.14 2.79 7.15 -52.49 -0.38 2.41 16 34 H 0.27 6.23 8.30 -40.82 -0.34 5.89 16 35 H 0.12 2.78 5.41 -51.93 -0.28 2.50 16 36 H 0.07 1.61 7.44 -51.93 -0.39 1.22 16 37 H 0.13 2.58 7.41 -52.48 -0.39 2.19 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 42 H 0.13 2.10 7.66 -52.49 -0.40 1.69 16 43 H 0.13 1.41 6.27 -52.49 -0.33 1.08 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -29.18 374.17 -8.48 -37.66 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.01 Total: 10.38 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -4.39 Total: -7.71 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.34 Total: -29.80 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.02 Total: -29.89 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.18 -8.48 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183358141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.473 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds