Wall clock time and date at job start Tue Mar 31 2020 23:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35667 * 117.00051 * 2 1 4 4 C 1.39124 * 119.88355 * 179.97438 * 3 2 1 5 5 C 1.37106 * 120.10751 * 180.27642 * 4 3 2 6 6 C 1.40051 * 119.88668 * 359.47102 * 5 4 3 7 7 C 1.47191 * 120.11552 * 180.23513 * 6 5 4 8 8 O 1.21552 * 120.00120 * 174.84820 * 7 6 5 9 9 C 1.48440 * 119.99408 * 354.85057 * 7 6 5 10 10 O 1.21558 * 120.00278 * 84.18201 * 9 7 6 11 11 N 1.34789 * 119.99821 * 264.17856 * 9 7 6 12 12 C 1.35781 * 119.99620 * 5.80906 * 11 9 7 13 13 H 1.08000 * 120.00533 * 323.12230 * 12 11 9 14 14 C 1.39895 * 119.99853 * 143.12506 * 12 11 9 15 15 N 1.30833 * 119.99623 * 339.74731 * 14 12 11 16 16 Si 1.86797 * 120.00187 * 159.74263 * 14 12 11 17 17 H 1.48501 * 109.46995 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47250 * 119.99930 * 16 14 12 19 19 H 1.48494 * 109.46958 * 240.00371 * 16 14 12 20 20 C 1.46501 * 119.99734 * 185.80730 * 11 9 7 21 21 C 1.50699 * 109.46703 * 85.20126 * 20 11 9 22 22 C 1.38241 * 119.99975 * 269.96394 * 21 20 11 23 23 C 1.38234 * 120.00092 * 179.76933 * 22 21 20 24 24 C 1.38241 * 119.99891 * 0.50832 * 23 22 21 25 25 C 1.38240 * 119.99820 * 359.74731 * 24 23 22 26 26 C 1.38231 * 120.00227 * 90.24321 * 21 20 11 27 27 C 1.40064 * 119.77965 * 0.54597 * 6 5 4 28 28 C 1.37100 * 119.88204 * 359.71336 * 27 6 5 29 29 H 1.09002 * 109.47318 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47245 * 300.00393 * 1 2 3 31 31 H 1.09005 * 109.47188 * 60.00196 * 1 2 3 32 32 H 1.07998 * 119.94988 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.05720 * 179.72373 * 5 4 3 34 34 H 0.96996 * 119.99954 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.46585 * 205.19648 * 20 11 9 36 36 H 1.08998 * 109.47150 * 325.20167 * 20 11 9 37 37 H 1.08003 * 119.99663 * 359.97438 * 22 21 20 38 38 H 1.07996 * 120.00369 * 180.23402 * 23 22 21 39 39 H 1.07995 * 120.00271 * 179.72136 * 24 23 22 40 40 H 1.07997 * 119.99685 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.00256 * 359.97438 * 26 21 20 42 42 H 1.07996 * 120.05777 * 179.68337 * 27 6 5 43 43 H 1.08000 * 119.94187 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4344 1.2788 0.0005 5 6 4.0616 2.4979 0.0063 6 6 3.3011 3.6740 0.0004 7 6 3.9693 4.9855 0.0012 8 8 3.3115 6.0028 -0.0984 9 6 5.4465 5.0657 0.1237 10 8 6.1456 4.9475 -0.8636 11 7 6.0126 5.2697 1.3299 12 6 5.2420 5.2840 2.4477 13 1 4.2530 5.7167 2.4164 14 6 5.7292 4.7382 3.6402 15 7 6.7178 3.8818 3.6116 16 14 4.9684 5.2325 5.2730 17 1 3.8741 6.2075 5.0343 18 1 4.4197 4.0289 5.9480 19 1 6.0061 5.8535 6.1348 20 6 7.4592 5.4758 1.4345 21 6 7.7771 6.9309 1.2049 22 6 8.0385 7.3879 -0.0734 23 6 8.3253 8.7235 -0.2847 24 6 8.3612 9.6002 0.7835 25 6 8.1051 9.1421 2.0624 26 6 7.8130 7.8075 2.2730 27 6 1.9026 3.5981 0.0002 28 6 1.2849 2.3741 -0.0001 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 4.0199 0.3713 0.0014 33 1 5.1403 2.5513 0.0112 34 1 7.0554 3.5031 4.4383 35 1 7.7969 5.1826 2.4286 36 1 7.9678 4.8700 0.6846 37 1 8.0152 6.7020 -0.9073 38 1 8.5258 9.0813 -1.2838 39 1 8.5898 10.6428 0.6190 40 1 8.1335 9.8270 2.8970 41 1 7.6129 7.4498 3.2723 42 1 1.3118 4.5021 0.0008 43 1 0.2066 2.3144 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183358141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:27 Heat of formation + Delta-G solvation = -56.960234 kcal Electronic energy + Delta-G solvation = -28955.428612 eV Core-core repulsion = 24931.065014 eV Total energy + Delta-G solvation = -4024.363598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74938 -40.95035 -40.09360 -39.04287 -38.07607 -36.97701 -33.91549 -32.64090 -32.32728 -31.73462 -31.64493 -28.45542 -27.93355 -27.20540 -25.44233 -23.55444 -23.38603 -23.16766 -22.00449 -20.94174 -19.48159 -19.11291 -18.28147 -17.69873 -17.38584 -17.11837 -16.85964 -16.70605 -16.39506 -16.06820 -15.84107 -15.74596 -15.32380 -15.01811 -14.92472 -14.71010 -14.44774 -14.24956 -13.92888 -13.69655 -13.66120 -13.53752 -13.31628 -13.20658 -12.84873 -12.82496 -12.60117 -12.34567 -12.06073 -12.03847 -11.97810 -11.84985 -11.79424 -11.12910 -10.29387 -10.18737 -9.78311 -9.70909 -9.60127 -9.33609 -8.46149 -6.18380 -0.44600 0.30873 0.44489 0.54146 1.19568 1.28724 1.42591 1.54285 1.66116 2.19273 2.24270 2.46737 2.74393 2.84580 3.02916 3.62740 3.67374 3.78993 3.99973 4.06778 4.12557 4.16482 4.21483 4.32642 4.33888 4.43414 4.44225 4.49427 4.52282 4.69816 4.76706 4.81999 4.93195 5.06438 5.08475 5.16643 5.17865 5.22771 5.31821 5.32757 5.54774 5.60880 5.61414 5.71184 5.87593 6.17236 6.19919 6.25849 6.30402 6.89664 7.25281 7.73502 8.56393 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.003793 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.523520 B = 7380.025866 C = 8539.418072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.168 3.832 4 C -0.170 4.170 5 C -0.017 4.017 6 C -0.216 4.216 7 C 0.425 3.575 8 O -0.479 6.479 9 C 0.423 3.577 10 O -0.608 6.608 11 N -0.400 5.400 12 C -0.375 4.375 13 H 0.076 0.924 14 C 0.031 3.969 15 N -0.863 5.863 16 Si 0.968 3.032 17 H -0.268 1.268 18 H -0.271 1.271 19 H -0.263 1.263 20 C 0.150 3.850 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.113 4.113 27 C -0.019 4.019 28 C -0.213 4.213 29 H 0.125 0.875 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.151 0.849 33 H 0.116 0.884 34 H 0.282 0.718 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -2.156 -1.233 7.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.121 3.879 4 C -0.189 4.189 5 C -0.036 4.036 6 C -0.217 4.217 7 C 0.303 3.697 8 O -0.356 6.356 9 C 0.211 3.789 10 O -0.497 6.497 11 N -0.116 5.116 12 C -0.503 4.503 13 H 0.093 0.907 14 C -0.177 4.177 15 N -0.497 5.497 16 Si 0.791 3.209 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.187 1.187 20 C 0.028 3.972 21 C -0.111 4.111 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.037 4.037 28 C -0.232 4.232 29 H 0.143 0.857 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.168 0.832 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.123 0.877 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.005 -2.028 -1.592 7.464 hybrid contribution -0.122 0.112 0.675 0.695 sum -7.128 -1.916 -0.917 7.437 Atomic orbital electron populations 1.23516 0.75654 1.06190 1.02899 1.86034 1.24200 1.25932 1.87233 1.19408 0.92009 0.85078 0.91423 1.20356 0.92319 0.98211 1.07981 1.21026 0.99682 0.91432 0.91441 1.20130 0.95432 0.92845 1.13338 1.22226 0.89115 0.89420 0.68921 1.90498 1.67283 1.38950 1.38830 1.20786 0.90076 0.82728 0.85350 1.90617 1.63265 1.57413 1.38363 1.43177 1.06612 1.57171 1.04667 1.19391 1.00948 1.41310 0.88620 0.90666 1.26077 0.96625 0.92699 1.02309 1.69706 1.26387 1.23258 1.30347 0.85266 0.79067 0.78812 0.77780 1.19220 1.19651 1.18714 1.20407 0.81865 0.91174 1.03793 1.20441 0.99590 0.96720 0.94309 1.21259 0.99833 0.97052 0.96118 1.21409 1.00349 0.92547 1.00483 1.21481 0.99608 1.00705 0.92073 1.21448 0.99635 0.94807 0.98489 1.21165 0.99358 0.94315 0.98309 1.21157 0.91920 0.99212 0.91401 1.21323 1.01917 0.90451 1.09469 0.85698 0.91266 0.90932 0.83164 0.86624 0.90712 0.87439 0.93111 0.87666 0.84026 0.82652 0.83342 0.86807 0.83923 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.80 113.37 1.11 1.25 16 2 O -0.32 -7.28 10.48 -89.84 -0.94 -8.22 16 3 C 0.17 4.61 6.70 22.69 0.15 4.76 16 4 C -0.17 -5.45 9.95 22.22 0.22 -5.22 16 5 C -0.02 -0.68 9.43 22.44 0.21 -0.46 16 6 C -0.22 -8.90 5.88 -20.04 -0.12 -9.01 16 7 C 0.43 20.88 5.29 27.35 0.14 21.03 16 8 O -0.48 -24.40 17.11 -3.88 -0.07 -24.46 16 9 C 0.42 22.50 5.95 86.96 0.52 23.02 16 10 O -0.61 -33.89 15.99 -3.90 -0.06 -33.95 16 11 N -0.40 -21.03 2.49 -642.34 -1.60 -22.63 16 12 C -0.38 -19.60 8.70 84.48 0.74 -18.87 16 13 H 0.08 4.10 7.28 -2.91 -0.02 4.08 16 14 C 0.03 1.50 4.95 85.24 0.42 1.92 16 15 N -0.86 -43.04 11.39 21.82 0.25 -42.79 16 16 Si 0.97 38.56 29.60 68.60 2.03 40.59 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 C 0.15 7.42 5.07 85.63 0.43 7.85 16 21 C -0.11 -4.87 5.42 -19.87 -0.11 -4.98 16 22 C -0.12 -5.17 9.60 22.27 0.21 -4.95 16 23 C -0.13 -4.34 10.05 22.27 0.22 -4.11 16 24 C -0.12 -3.52 10.05 22.27 0.22 -3.29 16 25 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 26 C -0.11 -4.45 9.70 22.27 0.22 -4.24 16 27 C -0.02 -0.61 9.57 22.45 0.21 -0.40 16 28 C -0.21 -5.48 8.99 22.21 0.20 -5.28 16 29 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 31 H 0.07 0.73 7.65 -2.38 -0.02 0.71 16 32 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 33 H 0.12 5.05 7.15 -2.91 -0.02 5.03 16 34 H 0.28 12.99 8.30 -92.71 -0.77 12.22 16 35 H 0.11 5.44 5.41 -2.39 -0.01 5.43 16 36 H 0.05 2.60 7.44 -2.39 -0.02 2.58 16 37 H 0.11 4.71 7.41 -2.91 -0.02 4.69 16 38 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 42 H 0.14 4.39 7.66 -2.91 -0.02 4.37 16 43 H 0.17 2.93 6.27 -2.91 -0.02 2.91 16 Total: -1.00 -68.19 374.17 5.89 -62.30 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 1.04 Total: 33.92 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 5.24 Total: -4.75 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -1.35 Total: -65.42 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -1.07 Total: -66.64 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -68.19 5.89 -62.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183358141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.338 kcal (2) G-P(sol) polarization free energy of solvation -68.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds