Wall clock time and date at job start Tue Mar 31 2020 23:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47698 * 265.00579 * 9 8 7 11 11 C 1.53041 * 109.45866 * 295.02877 * 10 9 8 12 12 C 1.53196 * 109.30955 * 178.59909 * 11 10 9 13 13 N 1.46925 * 108.76476 * 54.65464 * 12 11 10 14 14 S 1.65601 * 120.62730 * 126.40823 * 13 12 11 15 15 O 1.42093 * 106.40432 * 23.51413 * 14 13 12 16 16 O 1.42103 * 106.40149 * 156.43600 * 14 13 12 17 17 C 1.76201 * 107.21614 * 269.97144 * 14 13 12 18 18 H 1.08002 * 119.99871 * 0.02562 * 17 14 13 19 19 C 1.37873 * 120.00315 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99593 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 120.00427 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47215 * 60.00117 * 21 19 17 23 23 H 1.48497 * 109.47536 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47155 * 300.00245 * 21 19 17 25 25 C 1.46926 * 118.73936 * 306.38037 * 13 12 11 26 26 C 1.53040 * 109.46249 * 174.97172 * 10 9 8 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 29 29 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 30 30 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 35 35 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 36 36 H 1.09004 * 109.45821 * 55.00128 * 10 9 8 37 37 H 1.08996 * 109.49635 * 298.56156 * 11 10 9 38 38 H 1.09002 * 109.49588 * 58.66177 * 11 10 9 39 39 H 1.09006 * 109.59638 * 294.86577 * 12 11 10 40 40 H 1.09004 * 109.69847 * 174.50995 * 12 11 10 41 41 H 0.97002 * 119.99889 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58343 * 293.82450 * 25 13 12 43 43 H 1.08996 * 109.70161 * 173.46695 * 25 13 12 44 44 H 1.08999 * 109.49339 * 301.33807 * 26 10 9 45 45 H 1.08996 * 109.49999 * 61.43524 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4263 -0.4746 -1.4370 11 6 3.0634 -0.8787 -2.0039 12 6 3.2352 -1.3425 -3.4538 13 7 4.2449 -2.4092 -3.4923 14 16 3.9047 -3.8678 -4.1989 15 8 2.8533 -3.6297 -5.1246 16 8 5.1537 -4.4347 -4.5703 17 6 3.2376 -4.9114 -2.9457 18 1 3.1242 -4.5403 -1.9378 19 6 2.8603 -6.2017 -3.2517 20 7 2.9989 -6.6537 -4.4790 21 14 2.1524 -7.3079 -1.9234 22 1 0.9170 -6.6937 -1.3742 23 1 1.8283 -8.6351 -2.5052 24 1 3.1487 -7.4740 -0.8347 25 6 5.5622 -2.1570 -2.8925 26 6 5.3643 -1.6838 -1.4491 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2128 2.3203 -0.0010 31 1 1.3339 4.5114 0.0026 32 1 3.7920 4.6381 -0.0024 33 1 5.1344 2.5754 -0.0023 34 1 5.2326 0.2265 0.4336 35 1 3.7469 -0.7414 0.5899 36 1 4.8522 0.3214 -2.0478 37 1 2.6483 -1.6918 -1.4084 38 1 2.3886 -0.0233 -1.9733 39 1 3.5647 -0.5051 -4.0689 40 1 2.2867 -1.7232 -3.8326 41 1 2.7339 -7.5617 -4.6942 42 1 6.0814 -1.3861 -3.4620 43 1 6.1506 -3.0745 -2.8988 44 1 6.3273 -1.4014 -1.0235 45 1 4.9273 -2.4892 -0.8589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192953156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:44 Heat of formation + Delta-G solvation = -115.059455 kcal Electronic energy + Delta-G solvation = -28504.833792 eV Core-core repulsion = 24613.394774 eV Total energy + Delta-G solvation = -3891.439018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50892 -38.13073 -37.41486 -35.22252 -34.08171 -33.87420 -33.00915 -30.98774 -30.51651 -30.10031 -27.55643 -26.55139 -26.06118 -23.07710 -22.75000 -22.12858 -21.03776 -19.77925 -18.41909 -18.04772 -17.37686 -16.29827 -16.22088 -15.88681 -15.74161 -14.97931 -14.82590 -14.59325 -14.26355 -14.14840 -13.78303 -13.64172 -13.58092 -13.23694 -13.13366 -12.63207 -12.54138 -12.11159 -12.00196 -11.94193 -11.67931 -11.37883 -11.24190 -11.17231 -11.13560 -10.92194 -10.78751 -10.75070 -10.59257 -10.30195 -10.22347 -10.20757 -9.82957 -9.76392 -9.19155 -8.94937 -8.82046 -8.21384 -8.04095 -6.64013 -5.25364 1.20770 1.34351 2.35781 3.10937 3.15136 3.21036 3.24304 3.64335 4.09808 4.61541 4.64732 4.68976 4.69259 4.86949 4.97358 5.07329 5.07890 5.16878 5.21441 5.26881 5.40412 5.45918 5.51759 5.60807 5.67954 5.79185 5.85812 5.90490 5.92357 5.98134 6.09000 6.17558 6.22632 6.27446 6.29330 6.33745 6.37679 6.39873 6.48765 6.57631 6.65836 6.69139 6.86788 6.99623 7.33754 7.38610 7.71139 8.04697 8.94708 10.29413 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.003638 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.486771 B = 7694.928830 C = 8488.231583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.303 6.303 3 C 0.133 3.867 4 C -0.210 4.210 5 C -0.090 4.090 6 C -0.159 4.159 7 C -0.082 4.082 8 C -0.105 4.105 9 C -0.069 4.069 10 C -0.074 4.074 11 C -0.122 4.122 12 C 0.126 3.874 13 N -1.011 6.011 14 S 2.716 3.284 15 O -1.006 7.006 16 O -1.006 7.006 17 C -1.018 5.018 18 H 0.102 0.898 19 C 0.133 3.867 20 N -0.848 5.848 21 Si 0.918 3.082 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.264 1.264 25 C 0.128 3.872 26 C -0.129 4.129 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.290 0.710 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 18.051 11.844 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.216 6.216 3 C 0.088 3.912 4 C -0.228 4.228 5 C -0.108 4.108 6 C -0.177 4.177 7 C -0.100 4.100 8 C -0.106 4.106 9 C -0.107 4.107 10 C -0.093 4.093 11 C -0.161 4.161 12 C 0.000 4.000 13 N -0.846 5.846 14 S 2.817 3.183 15 O -0.997 6.997 16 O -0.997 6.997 17 C -1.151 5.151 18 H 0.120 0.880 19 C -0.084 4.084 20 N -0.478 5.478 21 Si 0.742 3.258 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.189 1.189 25 C 0.002 3.998 26 C -0.168 4.168 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.423 17.522 10.755 20.609 hybrid contribution -0.938 -0.445 1.315 1.676 sum -2.361 17.077 12.070 21.045 Atomic orbital electron populations 1.23075 0.78703 1.04299 1.00944 1.86246 1.20986 1.26236 1.88100 1.18853 0.91906 0.84405 0.96055 1.21231 0.99971 0.92469 1.09156 1.20877 0.94686 0.96834 0.98372 1.21004 0.93927 0.98276 1.04525 1.20901 0.99815 0.91092 0.98238 1.19327 0.90681 0.96062 1.04501 1.20562 0.98413 0.93866 0.97812 1.21045 0.96508 0.97109 0.94640 1.22010 0.96270 1.01379 0.96400 1.21216 0.92199 0.90417 0.96151 1.58141 1.19314 1.31262 1.75912 1.00442 0.73043 0.70468 0.74342 1.93342 1.57992 1.85111 1.63244 1.93344 1.46259 1.76433 1.83646 1.30627 1.58811 1.11334 1.14353 0.88013 1.24740 0.90573 0.97031 0.96076 1.69898 1.39938 1.19130 1.18822 0.86239 0.79937 0.78513 0.81077 1.18924 1.20195 1.18872 1.21159 0.84706 1.01575 0.92404 1.21981 0.98996 0.98051 0.97774 0.87960 0.93058 0.92620 0.85670 0.86215 0.86223 0.85565 0.91308 0.90487 0.91560 0.90821 0.91552 0.93024 0.89497 0.89933 0.92754 0.89264 0.91648 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -3.71 7.13 -19.42 -0.14 -3.85 16 3 C 0.13 1.58 5.37 -39.22 -0.21 1.37 16 4 C -0.21 -2.14 9.04 -39.43 -0.36 -2.50 16 5 C -0.09 -0.83 10.04 -39.60 -0.40 -1.23 16 6 C -0.16 -1.48 10.04 -39.56 -0.40 -1.87 16 7 C -0.08 -0.83 9.68 -39.61 -0.38 -1.21 16 8 C -0.11 -1.22 4.86 -104.48 -0.51 -1.73 16 9 C -0.07 -0.82 4.67 -27.89 -0.13 -0.95 16 10 C -0.07 -1.00 2.14 -90.58 -0.19 -1.19 16 11 C -0.12 -1.88 3.96 -26.61 -0.11 -1.98 16 12 C 0.13 2.30 6.38 -3.71 -0.02 2.27 16 13 N -1.01 -21.15 3.29 -113.52 -0.37 -21.52 16 14 S 2.72 73.83 4.97 -107.50 -0.53 73.29 16 15 O -1.01 -29.95 16.73 -57.17 -0.96 -30.91 16 16 O -1.01 -29.88 16.74 -57.17 -0.96 -30.84 16 17 C -1.02 -28.37 9.75 30.60 0.30 -28.07 16 18 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 19 C 0.13 3.76 5.46 -17.82 -0.10 3.67 16 20 N -0.85 -25.30 13.19 55.43 0.73 -24.57 16 21 Si 0.92 20.80 29.54 -169.99 -5.02 15.77 16 22 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 25 C 0.13 2.25 6.37 -3.71 -0.02 2.23 16 26 C -0.13 -1.86 5.36 -26.61 -0.14 -2.00 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 35 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.24 7.85 -51.93 -0.41 0.83 16 38 H 0.07 0.96 5.43 -51.93 -0.28 0.67 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.70 7.12 -51.93 -0.37 1.33 16 41 H 0.29 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.68 7.13 -51.93 -0.37 1.31 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -35.65 369.90 -10.08 -45.73 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.72 Total: 3.30 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: -1.68 Total: -31.99 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.36 Total: -46.09 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -2.05 Total: -65.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 73.83 SS G_CDS: -0.53 Total: 73.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.65 -10.08 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.325 kcal (2) G-P(sol) polarization free energy of solvation -35.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds