Wall clock time and date at job start Tue Mar 31 2020 23:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47698 * 265.00579 * 9 8 7 11 11 C 1.53041 * 109.45866 * 295.02877 * 10 9 8 12 12 C 1.53196 * 109.30955 * 178.59909 * 11 10 9 13 13 N 1.46925 * 108.76476 * 54.65464 * 12 11 10 14 14 S 1.65601 * 120.62730 * 126.40823 * 13 12 11 15 15 O 1.42093 * 106.40432 * 23.51413 * 14 13 12 16 16 O 1.42103 * 106.40149 * 156.43600 * 14 13 12 17 17 C 1.76201 * 107.21614 * 269.97144 * 14 13 12 18 18 H 1.08002 * 119.99871 * 0.02562 * 17 14 13 19 19 C 1.37873 * 120.00315 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99593 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 120.00427 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47215 * 60.00117 * 21 19 17 23 23 H 1.48497 * 109.47536 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47155 * 300.00245 * 21 19 17 25 25 C 1.46926 * 118.73936 * 306.38037 * 13 12 11 26 26 C 1.53040 * 109.46249 * 174.97172 * 10 9 8 27 27 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 29 29 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 30 30 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 35 35 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 36 36 H 1.09004 * 109.45821 * 55.00128 * 10 9 8 37 37 H 1.08996 * 109.49635 * 298.56156 * 11 10 9 38 38 H 1.09002 * 109.49588 * 58.66177 * 11 10 9 39 39 H 1.09006 * 109.59638 * 294.86577 * 12 11 10 40 40 H 1.09004 * 109.69847 * 174.50995 * 12 11 10 41 41 H 0.97002 * 119.99889 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58343 * 293.82450 * 25 13 12 43 43 H 1.08996 * 109.70161 * 173.46695 * 25 13 12 44 44 H 1.08999 * 109.49339 * 301.33807 * 26 10 9 45 45 H 1.08996 * 109.49999 * 61.43524 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4263 -0.4746 -1.4370 11 6 3.0634 -0.8787 -2.0039 12 6 3.2352 -1.3425 -3.4538 13 7 4.2449 -2.4092 -3.4923 14 16 3.9047 -3.8678 -4.1989 15 8 2.8533 -3.6297 -5.1246 16 8 5.1537 -4.4347 -4.5703 17 6 3.2376 -4.9114 -2.9457 18 1 3.1242 -4.5403 -1.9378 19 6 2.8603 -6.2017 -3.2517 20 7 2.9989 -6.6537 -4.4790 21 14 2.1524 -7.3079 -1.9234 22 1 0.9170 -6.6937 -1.3742 23 1 1.8283 -8.6351 -2.5052 24 1 3.1487 -7.4740 -0.8347 25 6 5.5622 -2.1570 -2.8925 26 6 5.3643 -1.6838 -1.4491 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2128 2.3203 -0.0010 31 1 1.3339 4.5114 0.0026 32 1 3.7920 4.6381 -0.0024 33 1 5.1344 2.5754 -0.0023 34 1 5.2326 0.2265 0.4336 35 1 3.7469 -0.7414 0.5899 36 1 4.8522 0.3214 -2.0478 37 1 2.6483 -1.6918 -1.4084 38 1 2.3886 -0.0233 -1.9733 39 1 3.5647 -0.5051 -4.0689 40 1 2.2867 -1.7232 -3.8326 41 1 2.7339 -7.5617 -4.6942 42 1 6.0814 -1.3861 -3.4620 43 1 6.1506 -3.0745 -2.8988 44 1 6.3273 -1.4014 -1.0235 45 1 4.9273 -2.4892 -0.8589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192953156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:43 Heat of formation + Delta-G solvation = -139.156934 kcal Electronic energy + Delta-G solvation = -28505.878737 eV Core-core repulsion = 24613.394774 eV Total energy + Delta-G solvation = -3892.483963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30830 -39.37937 -38.20050 -37.46643 -36.14369 -35.34327 -35.03149 -32.09293 -31.75714 -30.87736 -28.36326 -28.25171 -27.51685 -24.28021 -24.01657 -22.89672 -22.02855 -21.18610 -20.27668 -19.21415 -18.79624 -18.27658 -17.10741 -17.04007 -16.74988 -16.61097 -16.41313 -15.96884 -15.32002 -15.27358 -15.18520 -14.92301 -14.72642 -14.67287 -14.36015 -13.98556 -13.70086 -13.50161 -13.31633 -13.21288 -13.00975 -12.77084 -12.74519 -12.50386 -12.47119 -12.38164 -12.33618 -12.10030 -12.02300 -11.91759 -11.71861 -11.65702 -11.24342 -11.14070 -11.08346 -10.91423 -9.77575 -9.62501 -8.95481 -8.73796 -7.47719 0.32638 0.47706 0.60432 1.31789 1.34295 1.47288 2.19911 2.51221 2.57558 2.84924 2.90737 3.77196 3.80979 3.89190 3.94391 4.04332 4.08402 4.18663 4.32834 4.34813 4.41043 4.43057 4.47163 4.55529 4.56802 4.59998 4.70714 4.77030 4.78732 4.85572 4.89597 4.94454 5.01945 5.04077 5.09857 5.25383 5.25963 5.33906 5.35136 5.51364 5.52761 5.58999 5.67836 5.75768 5.92041 5.99477 6.05042 6.58503 6.78162 8.21068 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.003638 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.486771 B = 7694.928830 C = 8488.231583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.326 6.326 3 C 0.113 3.887 4 C -0.219 4.219 5 C -0.093 4.093 6 C -0.163 4.163 7 C -0.085 4.085 8 C -0.125 4.125 9 C -0.060 4.060 10 C -0.068 4.068 11 C -0.110 4.110 12 C 0.119 3.881 13 N -1.007 6.007 14 S 2.717 3.283 15 O -1.044 7.044 16 O -1.042 7.042 17 C -1.037 5.037 18 H 0.116 0.884 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.988 3.012 22 H -0.250 1.250 23 H -0.262 1.262 24 H -0.250 1.250 25 C 0.116 3.884 26 C -0.123 4.123 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.299 0.701 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 20.054 14.188 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.240 6.240 3 C 0.067 3.933 4 C -0.237 4.237 5 C -0.111 4.111 6 C -0.181 4.181 7 C -0.103 4.103 8 C -0.126 4.126 9 C -0.098 4.098 10 C -0.087 4.087 11 C -0.149 4.149 12 C -0.006 4.006 13 N -0.846 5.846 14 S 2.819 3.181 15 O -1.034 7.034 16 O -1.032 7.032 17 C -1.170 5.170 18 H 0.134 0.866 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.806 3.194 22 H -0.174 1.174 23 H -0.186 1.186 24 H -0.173 1.173 25 C -0.008 4.008 26 C -0.161 4.161 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.257 19.544 13.088 23.555 hybrid contribution -0.978 -0.925 0.561 1.459 sum -2.235 18.618 13.649 23.193 Atomic orbital electron populations 1.23223 0.77608 1.04741 1.02003 1.86199 1.22347 1.27019 1.88420 1.19117 0.92407 0.84690 0.97041 1.21469 1.00762 0.92455 1.09042 1.21235 0.95202 0.97328 0.97330 1.21348 0.94060 0.99116 1.03533 1.21173 1.00935 0.90702 0.97524 1.19440 0.90721 0.96482 1.05925 1.20436 0.99496 0.93695 0.96145 1.21007 0.94693 0.96884 0.96111 1.21903 0.98062 1.00992 0.93939 1.21457 0.90600 0.89894 0.98634 1.57660 1.21275 1.29789 1.75860 1.00015 0.72001 0.71572 0.74494 1.93279 1.59090 1.86035 1.65033 1.93284 1.47306 1.78089 1.84548 1.30944 1.58903 1.12140 1.15050 0.86619 1.26011 0.90580 0.98844 0.98728 1.69993 1.41346 1.20178 1.21283 0.85204 0.79756 0.76661 0.77828 1.17416 1.18648 1.17341 1.21494 0.82831 1.01668 0.94855 1.21960 1.01075 0.97986 0.95127 0.87909 0.91465 0.92061 0.84442 0.83972 0.83938 0.83689 0.89144 0.92047 0.90233 0.92707 0.90357 0.90837 0.91753 0.89134 0.90196 0.91123 0.88054 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -7.82 7.13 -92.39 -0.66 -8.48 16 3 C 0.11 2.51 5.37 22.51 0.12 2.63 16 4 C -0.22 -4.05 9.04 22.37 0.20 -3.85 16 5 C -0.09 -1.47 10.04 22.26 0.22 -1.24 16 6 C -0.16 -2.48 10.04 22.28 0.22 -2.26 16 7 C -0.09 -1.46 9.68 22.25 0.22 -1.25 16 8 C -0.13 -2.64 4.86 -19.77 -0.10 -2.74 16 9 C -0.06 -1.29 4.67 29.85 0.14 -1.15 16 10 C -0.07 -1.70 2.14 -10.77 -0.02 -1.72 16 11 C -0.11 -3.33 3.96 30.67 0.12 -3.21 16 12 C 0.12 4.36 6.38 86.36 0.55 4.91 16 13 N -1.01 -42.69 3.29 -513.06 -1.69 -44.38 16 14 S 2.72 153.08 4.97 -56.49 -0.28 152.80 16 15 O -1.04 -64.92 16.73 -128.00 -2.14 -67.06 16 16 O -1.04 -64.34 16.74 -128.00 -2.14 -66.49 16 17 C -1.04 -59.10 9.75 67.73 0.66 -58.44 16 18 H 0.12 6.03 7.81 -2.91 -0.02 6.00 16 19 C 0.07 4.05 5.46 84.65 0.46 4.51 16 20 N -0.90 -54.93 13.19 21.45 0.28 -54.65 16 21 Si 0.99 42.24 29.54 68.60 2.03 44.27 16 22 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 25 C 0.12 4.02 6.37 86.36 0.55 4.57 16 26 C -0.12 -3.31 5.36 30.67 0.16 -3.15 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 29 H 0.06 0.96 7.66 -2.39 -0.02 0.95 16 30 H 0.14 2.06 6.30 -2.91 -0.02 2.04 16 31 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.09 1.52 8.05 -2.38 -0.02 1.50 16 35 H 0.06 1.50 7.69 -2.38 -0.02 1.48 16 36 H 0.08 1.80 8.14 -2.38 -0.02 1.79 16 37 H 0.05 1.86 7.85 -2.39 -0.02 1.84 16 38 H 0.08 2.20 5.43 -2.39 -0.01 2.19 16 39 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.06 2.62 7.12 -2.39 -0.02 2.60 16 41 H 0.30 16.43 8.31 -92.71 -0.77 15.66 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 2.70 7.13 -2.39 -0.02 2.68 16 44 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -79.97 369.90 1.01 -78.96 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.98 Total: 25.95 kcal Atomic # 6 Polarization: -65.56 SS G_CDS: 4.63 Total: -60.93 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -1.40 Total: -99.02 kcal Atomic # 8 Polarization: -137.08 SS G_CDS: -4.94 Total: -142.02 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 153.08 SS G_CDS: -0.28 Total: 152.80 kcal Total: -79.97 1.01 -78.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.197 kcal (2) G-P(sol) polarization free energy of solvation -79.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds