Wall clock time and date at job start Tue Mar 31 2020 23:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 C 1.53039 * 109.46074 * 295.06704 * 9 8 7 11 11 C 1.53195 * 109.31121 * 178.61597 * 10 9 8 12 12 N 1.46928 * 108.77594 * 54.63750 * 11 10 9 13 13 S 1.65605 * 120.63050 * 126.40772 * 12 11 10 14 14 O 1.42106 * 106.40210 * 23.52174 * 13 12 11 15 15 O 1.42104 * 106.39998 * 156.43524 * 13 12 11 16 16 C 1.76195 * 107.22032 * 269.97747 * 13 12 11 17 17 H 1.07996 * 120.00122 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99973 * 179.97438 * 16 13 12 19 19 N 1.31517 * 119.99846 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00102 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.47107 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47558 * 120.00358 * 20 18 16 23 23 H 1.48508 * 109.46976 * 240.00363 * 20 18 16 24 24 C 1.46926 * 118.73928 * 306.38927 * 12 11 10 25 25 C 1.53048 * 109.45779 * 175.00115 * 9 8 7 26 26 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 31 31 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 32 32 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 33 33 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 34 34 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 35 35 H 1.08994 * 109.46292 * 55.03044 * 9 8 7 36 36 H 1.09005 * 109.49898 * 298.56870 * 10 9 8 37 37 H 1.08997 * 109.49669 * 58.66389 * 10 9 8 38 38 H 1.08990 * 109.58814 * 294.84618 * 11 10 9 39 39 H 1.09007 * 109.58488 * 174.42193 * 11 10 9 40 40 H 0.96996 * 119.99788 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.58443 * 293.82482 * 24 12 11 42 42 H 1.08995 * 109.70496 * 173.46544 * 24 12 11 43 43 H 1.09002 * 109.49734 * 301.33480 * 25 9 8 44 44 H 1.08998 * 109.49760 * 61.43174 * 25 9 8 45 45 H 1.08006 * 120.02917 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 6 5.7329 1.2987 -2.1281 11 6 6.2123 1.3429 -3.5824 12 7 7.6410 1.6857 -3.5992 13 16 8.7292 0.7274 -4.3991 14 8 7.9914 0.0203 -5.3865 15 8 9.8431 1.5549 -4.7055 16 6 9.3058 -0.4780 -3.2506 17 1 8.9336 -0.4794 -2.2368 18 6 10.2314 -1.4201 -3.6465 19 7 10.6843 -1.4187 -4.8812 20 14 10.8422 -2.6985 -2.4291 21 1 10.1826 -2.4862 -1.1157 22 1 10.5161 -4.0569 -2.9324 23 1 12.3132 -2.5689 -2.2715 24 6 8.0857 2.8950 -2.8931 25 6 7.5852 2.8334 -1.4465 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0106 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6381 0.0002 33 1 5.8760 3.5065 0.5126 34 1 5.9718 1.7291 0.5125 35 1 5.5895 3.4432 -1.9822 36 1 6.2321 0.4830 -1.6050 37 1 4.6547 1.1403 -2.1051 38 1 5.6489 2.0982 -4.1301 39 1 6.0652 0.3671 -4.0455 40 1 11.3357 -2.0812 -5.1596 41 1 7.6749 3.7769 -3.3846 42 1 9.1744 2.9459 -2.9012 43 1 7.8254 3.7673 -0.9384 44 1 8.0670 2.0033 -0.9298 45 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192966294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:48 Heat of formation + Delta-G solvation = -118.497642 kcal Electronic energy + Delta-G solvation = -27758.867430 eV Core-core repulsion = 23867.279321 eV Total energy + Delta-G solvation = -3891.588109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37466 -38.67620 -37.36734 -35.24117 -33.96069 -33.85928 -33.01638 -31.12927 -30.48963 -30.35866 -27.58736 -26.66406 -26.07961 -23.04161 -22.91558 -22.42875 -20.88260 -19.88077 -18.44824 -17.84642 -17.40492 -16.39643 -16.22960 -16.11829 -15.93130 -15.01300 -14.89532 -14.69023 -14.23504 -14.20306 -13.90661 -13.79910 -13.53457 -13.27550 -13.14705 -12.84490 -12.64173 -12.19999 -11.99942 -11.88759 -11.74893 -11.51495 -11.41590 -11.21044 -11.18723 -10.97847 -10.84182 -10.79122 -10.56467 -10.39952 -10.27756 -10.24096 -9.89306 -9.82279 -9.22222 -8.89433 -8.82676 -8.33258 -8.10610 -6.65639 -5.26968 1.18890 1.32441 2.33203 3.07551 3.08025 3.15920 3.23131 3.61920 4.08865 4.59431 4.60626 4.61880 4.67858 4.83086 4.87808 4.89846 4.94722 5.10708 5.15723 5.20616 5.25266 5.35303 5.40969 5.53318 5.69353 5.71425 5.80007 5.83298 5.87213 5.93715 5.99079 6.11962 6.16592 6.17314 6.24333 6.28598 6.30325 6.31821 6.45349 6.51980 6.59368 6.65736 6.73889 6.94470 7.23882 7.37013 7.67323 8.03386 8.93547 10.27805 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.003106 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.699488 B = 9012.061640 C = 9742.509961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.217 4.217 5 C -0.081 4.081 6 C -0.156 4.156 7 C -0.032 4.032 8 C -0.080 4.080 9 C -0.076 4.076 10 C -0.133 4.133 11 C 0.128 3.872 12 N -1.012 6.012 13 S 2.715 3.285 14 O -1.005 7.005 15 O -1.006 7.006 16 C -1.017 5.017 17 H 0.102 0.898 18 C 0.133 3.867 19 N -0.847 5.847 20 Si 0.918 3.082 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.271 1.271 24 C 0.127 3.873 25 C -0.130 4.130 26 C -0.146 4.146 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.290 0.710 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.630 8.215 12.640 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.236 4.236 5 C -0.099 4.099 6 C -0.174 4.174 7 C -0.032 4.032 8 C -0.117 4.117 9 C -0.094 4.094 10 C -0.172 4.172 11 C 0.002 3.998 12 N -0.847 5.847 13 S 2.816 3.184 14 O -0.996 6.996 15 O -0.996 6.996 16 C -1.151 5.151 17 H 0.120 0.880 18 C -0.085 4.085 19 N -0.477 5.477 20 Si 0.742 3.258 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.197 1.197 24 C 0.001 3.999 25 C -0.169 4.169 26 C -0.165 4.165 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.207 8.081 11.553 22.245 hybrid contribution -0.049 -0.834 1.211 1.472 sum -17.256 7.247 12.764 22.655 Atomic orbital electron populations 1.23031 0.78581 1.03872 1.01180 1.86098 1.21220 1.27034 1.88712 1.19034 0.92363 0.84078 0.96342 1.21172 0.99785 0.92515 1.10139 1.20885 0.94626 0.96809 0.97562 1.20959 0.93617 0.98105 1.04706 1.19729 0.96005 0.91980 0.95522 1.20768 0.89935 1.03142 0.97848 1.21043 0.95832 0.98488 0.94047 1.22078 1.00924 0.97470 0.96725 1.21172 0.81474 1.01338 0.95841 1.58174 1.18069 1.37830 1.70608 1.00496 0.71167 0.72912 0.73835 1.93349 1.73188 1.73556 1.59491 1.93346 1.51538 1.70150 1.84587 1.30667 1.37506 1.32439 1.14471 0.87958 1.24751 0.92208 0.96161 0.95360 1.69910 1.26799 1.34314 1.16673 0.86168 0.78859 0.79821 0.80919 1.18620 1.19654 1.19652 1.21164 1.00333 0.87298 0.91089 1.21992 0.95056 1.02093 0.97714 1.20397 0.91187 0.98577 1.06343 0.92841 0.92688 0.88305 0.85857 0.86056 0.85983 0.90715 0.90551 0.91127 0.91102 0.91186 0.92753 0.89261 0.90015 0.92689 0.89179 0.91491 0.90982 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.58 10.50 -19.44 -0.20 -3.78 16 3 C 0.13 1.46 6.69 -39.22 -0.26 1.20 16 4 C -0.22 -2.13 9.04 -39.43 -0.36 -2.48 16 5 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 6 C -0.16 -1.54 9.70 -39.56 -0.38 -1.93 16 7 C -0.03 -0.35 4.71 -104.65 -0.49 -0.85 16 8 C -0.08 -0.84 4.84 -27.88 -0.13 -0.98 16 9 C -0.08 -0.94 2.14 -90.58 -0.19 -1.13 16 10 C -0.13 -1.93 4.97 -26.61 -0.13 -2.06 16 11 C 0.13 2.25 6.38 -3.71 -0.02 2.23 16 12 N -1.01 -20.66 3.29 -113.52 -0.37 -21.03 16 13 S 2.71 72.92 4.97 -107.50 -0.53 72.38 16 14 O -1.01 -29.70 16.73 -57.17 -0.96 -30.66 16 15 O -1.01 -29.54 16.74 -57.17 -0.96 -30.50 16 16 C -1.02 -28.10 9.75 30.60 0.30 -27.80 16 17 H 0.10 2.60 7.81 -52.49 -0.41 2.19 16 18 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 19 N -0.85 -25.16 13.19 55.43 0.73 -24.43 16 20 Si 0.92 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C 0.13 2.17 6.37 -3.71 -0.02 2.14 16 25 C -0.13 -1.76 5.36 -26.61 -0.14 -1.90 16 26 C -0.15 -1.74 7.86 -39.44 -0.31 -2.05 16 27 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 28 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.12 0.94 6.30 -52.49 -0.33 0.61 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.93 6.18 -51.93 -0.32 0.61 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.71 7.13 -51.93 -0.37 1.34 16 40 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.09 1.65 7.13 -51.93 -0.37 1.28 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.13 1.58 8.04 -52.48 -0.42 1.15 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -35.75 374.89 -10.13 -45.88 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.80 Total: 2.69 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -1.66 Total: -31.93 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.36 Total: -45.46 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -2.12 Total: -64.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 72.92 SS G_CDS: -0.53 Total: 72.38 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.75 -10.13 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192966294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.619 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds