Wall clock time and date at job start Tue Mar 31 2020 23:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 117.00068 * 2 1 4 4 C 1.38729 * 120.05726 * 180.02562 * 3 2 1 5 5 C 1.38154 * 119.94411 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05291 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.94375 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47182 * 95.17329 * 7 6 5 9 9 C 1.52998 * 112.85224 * 306.18144 * 8 7 6 10 10 N 1.46500 * 109.47172 * 292.89099 * 9 8 7 11 11 S 1.65595 * 119.99889 * 165.39285 * 10 9 8 12 12 O 1.42100 * 106.40005 * 178.53692 * 11 10 9 13 13 O 1.42101 * 106.40577 * 311.46020 * 11 10 9 14 14 C 1.76209 * 107.21900 * 64.99874 * 11 10 9 15 15 H 1.07990 * 119.99941 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99563 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00446 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99453 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47281 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47378 * 120.00191 * 18 16 14 21 21 H 1.48508 * 109.46759 * 240.00154 * 18 16 14 22 22 C 1.53777 * 113.61582 * 174.98110 * 8 7 6 23 23 C 1.53778 * 87.08605 * 219.94211 * 22 8 7 24 24 C 1.53780 * 87.17269 * 25.38955 * 23 22 8 25 25 C 1.38266 * 120.11409 * 0.27130 * 6 5 4 26 26 C 1.38144 * 120.05260 * 359.45404 * 25 6 5 27 27 H 1.08994 * 109.47177 * 300.00159 * 1 2 3 28 28 H 1.09002 * 109.46561 * 60.00322 * 1 2 3 29 29 H 1.08994 * 109.46699 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.03189 * 359.95069 * 4 3 2 31 31 H 1.07998 * 119.96967 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46905 * 335.18129 * 7 6 5 33 33 H 1.09000 * 109.47350 * 215.17720 * 7 6 5 34 34 H 1.09003 * 109.47244 * 52.89185 * 9 8 7 35 35 H 1.09004 * 109.47186 * 172.88485 * 9 8 7 36 36 H 0.96999 * 119.99822 * 345.38639 * 10 9 8 37 37 H 0.97001 * 119.99668 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.61273 * 105.38947 * 22 8 7 39 39 H 1.09003 * 113.69042 * 334.50493 * 22 8 7 40 40 H 1.08994 * 113.61689 * 139.98718 * 23 22 8 41 41 H 1.09008 * 113.60683 * 270.80173 * 23 22 8 42 42 H 1.09000 * 113.61557 * 89.15975 * 24 23 22 43 43 H 1.08998 * 113.61794 * 220.06584 * 24 23 22 44 44 H 1.08007 * 119.97142 * 179.70928 * 25 6 5 45 45 H 1.08009 * 120.02730 * 180.27100 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 6 4.1011 5.5311 -1.4398 9 6 4.7770 4.5276 -2.3762 10 7 6.1827 4.3728 -1.9936 11 16 7.0661 3.1022 -2.5828 12 8 8.3798 3.2511 -2.0620 13 8 6.2775 1.9374 -2.3812 14 6 7.1945 3.3203 -4.3266 15 1 6.7330 4.1746 -4.7993 16 6 7.8851 2.4009 -5.0873 17 7 8.4484 1.3614 -4.5114 18 14 8.0219 2.6326 -6.9359 19 1 7.3070 3.8719 -7.3336 20 1 9.4531 2.7422 -7.3165 21 1 7.4136 1.4674 -7.6270 22 6 4.6765 6.9535 -1.5423 23 6 3.6405 7.2083 -2.6498 24 6 2.7873 6.1062 -1.9999 25 6 1.9211 3.6048 0.0041 26 6 1.2916 2.3751 -0.0011 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3632 -1.0276 -0.0005 30 1 4.0209 0.3800 -0.0002 31 1 5.1345 2.5751 -0.0019 32 1 4.9822 4.9192 0.4283 33 1 3.4027 5.7241 0.5890 34 1 4.2721 3.5644 -2.3021 35 1 4.7175 4.8909 -3.4022 36 1 6.5959 5.0147 -1.3951 37 1 8.9340 0.7144 -5.0467 38 1 5.7078 6.9830 -1.8940 39 1 4.5169 7.5560 -0.6481 40 1 3.1855 8.1976 -2.6029 41 1 3.9968 6.9531 -3.6479 42 1 2.1093 6.4756 -1.2304 43 1 2.2957 5.4526 -2.7204 44 1 1.3341 4.5115 0.0084 45 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193004771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:30 Heat of formation + Delta-G solvation = -93.583939 kcal Electronic energy + Delta-G solvation = -28446.150558 eV Core-core repulsion = 24555.642788 eV Total energy + Delta-G solvation = -3890.507770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.30541 -39.43689 -37.20975 -35.13493 -33.88584 -33.67769 -32.99437 -31.86289 -30.79883 -28.13267 -26.86144 -26.10595 -25.81581 -25.03364 -22.82768 -22.11335 -20.68814 -18.99977 -18.26895 -17.91499 -17.35199 -16.18470 -16.05730 -15.82223 -15.67307 -15.20844 -15.06374 -14.69570 -14.32437 -14.13964 -13.91025 -13.78514 -13.31136 -13.21865 -12.79673 -12.62915 -12.43831 -12.28966 -12.02874 -11.93477 -11.75205 -11.49613 -11.21279 -11.20337 -11.09047 -10.90031 -10.60814 -10.56778 -10.55341 -10.23503 -10.15686 -10.10632 -9.96952 -9.85278 -9.22167 -8.93412 -8.69900 -8.37956 -7.83761 -6.66332 -5.27182 1.61709 1.64580 2.41765 3.07351 3.15814 3.22761 3.38428 3.98620 4.09457 4.55255 4.66176 4.68071 4.79418 4.89953 4.91903 5.00696 5.04387 5.08532 5.12023 5.28078 5.34832 5.39202 5.56337 5.61749 5.67427 5.75229 5.78572 5.86064 5.92444 5.97710 6.00110 6.04234 6.12535 6.19218 6.24156 6.31235 6.49986 6.52524 6.56035 6.60478 6.62059 6.91381 6.97074 7.04594 7.36188 7.56425 7.97348 8.04208 8.93549 10.27619 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.004442 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.841581 B = 6301.358133 C = 7721.479014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.116 3.884 4 C -0.136 4.136 5 C -0.055 4.055 6 C -0.115 4.115 7 C -0.058 4.058 8 C -0.081 4.081 9 C 0.151 3.849 10 N -1.134 6.134 11 S 2.714 3.286 12 O -1.010 7.010 13 O -1.000 7.000 14 C -1.021 5.021 15 H 0.101 0.899 16 C 0.133 3.867 17 N -0.845 5.845 18 Si 0.917 3.083 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.134 4.134 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.081 4.081 26 C -0.213 4.213 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.400 0.600 37 H 0.289 0.711 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.550 7.260 7.699 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.071 3.929 4 C -0.154 4.154 5 C -0.073 4.073 6 C -0.115 4.115 7 C -0.096 4.096 8 C -0.082 4.082 9 C 0.024 3.976 10 N -0.889 5.889 11 S 2.814 3.186 12 O -1.001 7.001 13 O -0.990 6.990 14 C -1.154 5.154 15 H 0.119 0.881 16 C -0.084 4.084 17 N -0.475 5.475 18 Si 0.741 3.259 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.196 1.196 22 C -0.172 4.172 23 C -0.179 4.179 24 C -0.165 4.165 25 C -0.099 4.099 26 C -0.232 4.232 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.231 0.769 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.111 6.047 8.112 18.185 hybrid contribution -0.103 0.769 -1.437 1.633 sum -15.214 6.817 6.675 17.958 Atomic orbital electron populations 1.22981 0.79036 1.03503 1.01043 1.86082 1.20853 1.27336 1.89016 1.19040 0.92391 0.83901 0.97524 1.20494 0.91074 0.99233 1.04633 1.20979 1.00293 0.90819 0.95223 1.19711 0.93357 0.95144 1.03334 1.20473 1.00441 0.93056 0.95607 1.22051 0.96766 0.94376 0.94998 1.20830 0.81567 0.98927 0.96291 1.55928 1.20351 1.48369 1.64276 1.00413 0.71416 0.70881 0.75926 1.93373 1.38596 1.85854 1.82256 1.93373 1.71103 1.46684 1.87813 1.30610 1.47036 1.18806 1.18975 0.88114 1.24721 0.90181 0.92049 1.01467 1.69902 1.28566 1.10434 1.38592 0.86186 0.78715 0.79250 0.81728 1.18664 1.19642 1.19631 1.22985 0.99687 0.95623 0.98895 1.22820 0.97731 0.98530 0.98868 1.22977 0.95761 0.97757 1.00040 1.20683 0.93850 0.96551 0.98779 1.21085 0.99413 0.92463 1.10192 0.93012 0.92836 0.88621 0.85080 0.85262 0.90774 0.91242 0.90228 0.92412 0.76896 0.90031 0.90753 0.90252 0.91887 0.89902 0.90191 0.91268 0.86324 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.58 10.50 -19.43 -0.20 -4.78 16 3 C 0.12 1.77 6.69 -39.22 -0.26 1.51 16 4 C -0.14 -2.32 9.99 -39.43 -0.39 -2.71 16 5 C -0.06 -0.92 8.43 -39.60 -0.33 -1.26 16 6 C -0.12 -1.62 4.22 -104.60 -0.44 -2.07 16 7 C -0.06 -0.72 4.72 -27.88 -0.13 -0.85 16 8 C -0.08 -1.02 0.56 -153.60 -0.09 -1.11 16 9 C 0.15 2.54 5.05 -4.04 -0.02 2.52 16 10 N -1.13 -21.63 5.72 -10.61 -0.06 -21.69 16 11 S 2.71 70.46 5.02 -107.50 -0.54 69.92 16 12 O -1.01 -29.40 18.02 -57.17 -1.03 -30.43 16 13 O -1.00 -28.03 17.48 -57.17 -1.00 -29.03 16 14 C -1.02 -28.11 9.72 30.60 0.30 -27.81 16 15 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 16 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 17 N -0.85 -24.99 13.19 55.43 0.73 -24.26 16 18 Si 0.92 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.13 -1.50 6.95 -25.92 -0.18 -1.68 16 23 C -0.14 -1.51 7.72 -25.92 -0.20 -1.71 16 24 C -0.13 -1.37 6.84 -25.82 -0.18 -1.55 16 25 C -0.08 -1.01 9.38 -39.61 -0.37 -1.38 16 26 C -0.21 -2.75 9.04 -39.43 -0.36 -3.10 16 27 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 31 H 0.13 2.33 8.04 -52.49 -0.42 1.91 16 32 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 33 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 34 H 0.08 1.49 5.94 -51.93 -0.31 1.18 16 35 H 0.06 0.97 7.32 -51.93 -0.38 0.59 16 36 H 0.40 6.62 7.93 -34.47 -0.27 6.35 16 37 H 0.29 7.69 8.31 -40.82 -0.34 7.36 16 38 H 0.07 0.90 7.48 -51.93 -0.39 0.51 16 39 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.96 7.62 -51.92 -0.40 0.56 16 42 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.12 1.24 6.30 -52.48 -0.33 0.91 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -35.26 380.17 -9.78 -45.04 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.62 Total: 10.04 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: -1.76 Total: -36.28 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.67 Total: -45.96 kcal Atomic # 8 Polarization: -62.01 SS G_CDS: -2.23 Total: -64.24 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 70.46 SS G_CDS: -0.54 Total: 69.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.26 -9.78 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193004771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.547 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds