Wall clock time and date at job start Tue Mar 31 2020 23:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 117.00068 * 2 1 4 4 C 1.38729 * 120.05726 * 180.02562 * 3 2 1 5 5 C 1.38154 * 119.94411 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05291 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.94375 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47182 * 95.17329 * 7 6 5 9 9 C 1.52998 * 112.85224 * 306.18144 * 8 7 6 10 10 N 1.46500 * 109.47172 * 292.89099 * 9 8 7 11 11 S 1.65595 * 119.99889 * 165.39285 * 10 9 8 12 12 O 1.42100 * 106.40005 * 178.53692 * 11 10 9 13 13 O 1.42101 * 106.40577 * 311.46020 * 11 10 9 14 14 C 1.76209 * 107.21900 * 64.99874 * 11 10 9 15 15 H 1.07990 * 119.99941 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99563 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00446 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99453 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47281 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47378 * 120.00191 * 18 16 14 21 21 H 1.48508 * 109.46759 * 240.00154 * 18 16 14 22 22 C 1.53777 * 113.61582 * 174.98110 * 8 7 6 23 23 C 1.53778 * 87.08605 * 219.94211 * 22 8 7 24 24 C 1.53780 * 87.17269 * 25.38955 * 23 22 8 25 25 C 1.38266 * 120.11409 * 0.27130 * 6 5 4 26 26 C 1.38144 * 120.05260 * 359.45404 * 25 6 5 27 27 H 1.08994 * 109.47177 * 300.00159 * 1 2 3 28 28 H 1.09002 * 109.46561 * 60.00322 * 1 2 3 29 29 H 1.08994 * 109.46699 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.03189 * 359.95069 * 4 3 2 31 31 H 1.07998 * 119.96967 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46905 * 335.18129 * 7 6 5 33 33 H 1.09000 * 109.47350 * 215.17720 * 7 6 5 34 34 H 1.09003 * 109.47244 * 52.89185 * 9 8 7 35 35 H 1.09004 * 109.47186 * 172.88485 * 9 8 7 36 36 H 0.96999 * 119.99822 * 345.38639 * 10 9 8 37 37 H 0.97001 * 119.99668 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.61273 * 105.38947 * 22 8 7 39 39 H 1.09003 * 113.69042 * 334.50493 * 22 8 7 40 40 H 1.08994 * 113.61689 * 139.98718 * 23 22 8 41 41 H 1.09008 * 113.60683 * 270.80173 * 23 22 8 42 42 H 1.09000 * 113.61557 * 89.15975 * 24 23 22 43 43 H 1.08998 * 113.61794 * 220.06584 * 24 23 22 44 44 H 1.08007 * 119.97142 * 179.70928 * 25 6 5 45 45 H 1.08009 * 120.02730 * 180.27100 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 6 4.1011 5.5311 -1.4398 9 6 4.7770 4.5276 -2.3762 10 7 6.1827 4.3728 -1.9936 11 16 7.0661 3.1022 -2.5828 12 8 8.3798 3.2511 -2.0620 13 8 6.2775 1.9374 -2.3812 14 6 7.1945 3.3203 -4.3266 15 1 6.7330 4.1746 -4.7993 16 6 7.8851 2.4009 -5.0873 17 7 8.4484 1.3614 -4.5114 18 14 8.0219 2.6326 -6.9359 19 1 7.3070 3.8719 -7.3336 20 1 9.4531 2.7422 -7.3165 21 1 7.4136 1.4674 -7.6270 22 6 4.6765 6.9535 -1.5423 23 6 3.6405 7.2083 -2.6498 24 6 2.7873 6.1062 -1.9999 25 6 1.9211 3.6048 0.0041 26 6 1.2916 2.3751 -0.0011 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3632 -1.0276 -0.0005 30 1 4.0209 0.3800 -0.0002 31 1 5.1345 2.5751 -0.0019 32 1 4.9822 4.9192 0.4283 33 1 3.4027 5.7241 0.5890 34 1 4.2721 3.5644 -2.3021 35 1 4.7175 4.8909 -3.4022 36 1 6.5959 5.0147 -1.3951 37 1 8.9340 0.7144 -5.0467 38 1 5.7078 6.9830 -1.8940 39 1 4.5169 7.5560 -0.6481 40 1 3.1855 8.1976 -2.6029 41 1 3.9968 6.9531 -3.6479 42 1 2.1093 6.4756 -1.2304 43 1 2.2957 5.4526 -2.7204 44 1 1.3341 4.5115 0.0084 45 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193004771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:28 Heat of formation + Delta-G solvation = -119.122101 kcal Electronic energy + Delta-G solvation = -28447.257976 eV Core-core repulsion = 24555.642788 eV Total energy + Delta-G solvation = -3891.615188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.35064 -40.44634 -38.24872 -37.33901 -36.08175 -35.32925 -34.96779 -32.93581 -31.90275 -29.08499 -28.26162 -27.86135 -26.86785 -26.10653 -23.86429 -23.19219 -21.71218 -21.02291 -19.43383 -19.25052 -18.98371 -18.10341 -17.22586 -17.10882 -16.78889 -16.61591 -16.25683 -16.15317 -15.87759 -15.66330 -15.15073 -15.02998 -14.73980 -14.40813 -14.08615 -13.96056 -13.80847 -13.44310 -13.25449 -13.12391 -13.04346 -12.94507 -12.79641 -12.55731 -12.45543 -12.35361 -12.30191 -12.25071 -11.94728 -11.82593 -11.59006 -11.28162 -11.27448 -11.01710 -10.90490 -10.82054 -10.09170 -9.84735 -8.92545 -8.75779 -7.48145 0.40951 0.47946 0.53093 1.30723 1.31591 1.49001 2.19508 2.44610 2.57328 2.85737 3.04416 3.63533 3.76035 3.77991 3.82179 3.95712 4.03162 4.11502 4.23227 4.29322 4.34829 4.42527 4.50275 4.55001 4.56848 4.66233 4.70772 4.75204 4.83336 4.87939 4.94807 5.01773 5.07091 5.14764 5.15268 5.18002 5.23888 5.29332 5.38867 5.41858 5.48485 5.54478 5.69999 5.83562 5.89503 5.96072 6.46176 6.54005 6.78252 8.20412 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.004442 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.841581 B = 6301.358133 C = 7721.479014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.346 6.346 3 C 0.107 3.893 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.057 4.057 8 C -0.084 4.084 9 C 0.146 3.854 10 N -1.114 6.114 11 S 2.721 3.279 12 O -1.050 7.050 13 O -1.032 7.032 14 C -1.043 5.043 15 H 0.117 0.883 16 C 0.070 3.930 17 N -0.894 5.894 18 Si 0.987 3.013 19 H -0.246 1.246 20 H -0.258 1.258 21 H -0.260 1.260 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.117 4.117 25 C -0.069 4.069 26 C -0.205 4.205 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.413 0.587 37 H 0.298 0.702 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.161 0.839 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 10.446 7.101 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C 0.062 3.938 4 C -0.193 4.193 5 C -0.097 4.097 6 C -0.117 4.117 7 C -0.094 4.094 8 C -0.086 4.086 9 C 0.020 3.980 10 N -0.874 5.874 11 S 2.821 3.179 12 O -1.041 7.041 13 O -1.021 7.021 14 C -1.176 5.176 15 H 0.135 0.865 16 C -0.143 4.143 17 N -0.526 5.526 18 Si 0.805 3.195 19 H -0.169 1.169 20 H -0.183 1.183 21 H -0.184 1.184 22 C -0.168 4.168 23 C -0.178 4.178 24 C -0.155 4.155 25 C -0.087 4.087 26 C -0.223 4.223 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.247 0.753 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.179 0.821 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.401 9.237 7.538 21.926 hybrid contribution 0.840 -0.247 -1.181 1.470 sum -17.562 8.990 6.357 20.728 Atomic orbital electron populations 1.23337 0.76348 1.05392 1.02433 1.86046 1.23707 1.27322 1.88977 1.19110 0.91758 0.85330 0.97626 1.20470 0.92663 0.98596 1.07583 1.20871 0.99220 0.92222 0.97436 1.19927 0.94311 0.94822 1.02637 1.20558 1.00448 0.92712 0.95718 1.22004 0.98439 0.93989 0.94159 1.21004 0.79870 0.99380 0.97794 1.55244 1.21180 1.47024 1.63972 0.99854 0.70803 0.71463 0.75792 1.93304 1.41210 1.86757 1.82809 1.93333 1.71469 1.49203 1.88108 1.30991 1.47206 1.19488 1.19938 0.86506 1.26000 0.89385 0.91409 1.07511 1.70000 1.29779 1.11746 1.41052 0.85150 0.79629 0.80165 0.74533 1.16922 1.18268 1.18398 1.23042 0.99019 0.94422 1.00317 1.22803 0.97448 0.99751 0.97808 1.23024 0.94855 0.97086 1.00491 1.21126 0.93131 0.97962 0.96484 1.21485 1.01023 0.91514 1.08294 0.91081 0.91747 0.86753 0.87833 0.88255 0.91936 0.87435 0.92630 0.92420 0.75279 0.89233 0.92299 0.87499 0.89593 0.91504 0.86957 0.91948 0.82141 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.35 -10.06 10.50 -92.44 -0.97 -11.03 16 3 C 0.11 3.31 6.69 22.51 0.15 3.46 16 4 C -0.17 -6.53 9.99 22.37 0.22 -6.30 16 5 C -0.08 -2.85 8.43 22.26 0.19 -2.67 16 6 C -0.12 -3.18 4.22 -19.85 -0.08 -3.26 16 7 C -0.06 -1.27 4.72 29.85 0.14 -1.13 16 8 C -0.08 -1.95 0.56 -51.59 -0.03 -1.98 16 9 C 0.15 4.95 5.05 86.38 0.44 5.39 16 10 N -1.11 -44.08 5.72 -187.49 -1.07 -45.15 16 11 S 2.72 148.75 5.02 -56.49 -0.28 148.47 16 12 O -1.05 -64.42 18.02 -128.00 -2.31 -66.72 16 13 O -1.03 -62.00 17.48 -128.00 -2.24 -64.24 16 14 C -1.04 -58.81 9.72 67.73 0.66 -58.15 16 15 H 0.12 5.96 7.81 -2.92 -0.02 5.94 16 16 C 0.07 3.97 5.46 84.65 0.46 4.43 16 17 N -0.89 -54.80 13.19 21.45 0.28 -54.51 16 18 Si 0.99 42.32 29.54 68.60 2.03 44.34 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 C -0.13 -2.51 6.95 31.12 0.22 -2.29 16 23 C -0.14 -2.49 7.72 31.12 0.24 -2.25 16 24 C -0.12 -2.02 6.84 31.18 0.21 -1.81 16 25 C -0.07 -1.51 9.38 22.25 0.21 -1.30 16 26 C -0.20 -4.78 9.04 22.37 0.20 -4.58 16 27 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 28 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 31 H 0.10 4.03 8.04 -2.91 -0.02 4.01 16 32 H 0.06 1.52 8.05 -2.39 -0.02 1.51 16 33 H 0.11 1.61 8.04 -2.39 -0.02 1.59 16 34 H 0.06 2.17 5.94 -2.39 -0.01 2.16 16 35 H 0.06 1.94 7.32 -2.39 -0.02 1.92 16 36 H 0.41 14.10 7.93 -96.75 -0.77 13.33 16 37 H 0.30 16.37 8.31 -92.71 -0.77 15.60 16 38 H 0.06 1.32 7.48 -2.39 -0.02 1.30 16 39 H 0.11 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.39 7.62 -2.38 -0.02 1.38 16 42 H 0.11 1.29 8.05 -2.39 -0.02 1.27 16 43 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.16 2.49 6.30 -2.91 -0.02 2.48 16 Total: -1.00 -82.67 380.17 0.01 -82.65 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.23 Total: 37.20 kcal Atomic # 6 Polarization: -75.35 SS G_CDS: 4.34 Total: -71.01 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -0.79 Total: -99.66 kcal Atomic # 8 Polarization: -136.48 SS G_CDS: -5.51 Total: -141.99 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 148.75 SS G_CDS: -0.28 Total: 148.47 kcal Total: -82.67 0.01 -82.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193004771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.468 kcal (2) G-P(sol) polarization free energy of solvation -82.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds