Wall clock time and date at job start Tue Mar 31 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 109.47078 * 2 1 4 4 C 1.46894 * 109.46978 * 240.00087 * 2 1 3 5 5 C 1.46902 * 109.47099 * 120.00331 * 2 1 3 6 6 C 1.53002 * 109.47205 * 53.72880 * 5 2 1 7 7 H 1.08994 * 109.46818 * 311.09007 * 6 5 2 8 8 C 1.50694 * 109.46710 * 71.09178 * 6 5 2 9 9 H 1.07997 * 119.99737 * 244.75808 * 8 6 5 10 10 C 1.37874 * 120.00142 * 64.76579 * 8 6 5 11 11 N 1.31515 * 120.00040 * 192.33737 * 10 8 6 12 12 Si 1.86798 * 120.00463 * 12.33363 * 10 8 6 13 13 H 1.48504 * 109.46967 * 89.84649 * 12 10 8 14 14 H 1.48493 * 109.47463 * 209.84821 * 12 10 8 15 15 H 1.48507 * 109.46846 * 329.85162 * 12 10 8 16 16 O 1.42902 * 109.47054 * 191.08958 * 6 5 2 17 17 C 1.42895 * 113.99825 * 149.99745 * 16 6 5 18 18 C 1.50701 * 109.47039 * 179.97438 * 17 16 6 19 19 N 1.30936 * 126.41313 * 90.00226 * 18 17 16 20 20 C 1.35346 * 105.57596 * 179.73668 * 19 18 17 21 21 C 1.47940 * 126.43282 * 180.02562 * 20 19 18 22 22 N 1.30201 * 125.46667 * 179.97438 * 21 20 19 23 23 C 1.31130 * 117.09891 * 179.97438 * 22 21 20 24 24 C 1.33891 * 115.83469 * 0.02562 * 23 22 21 25 25 S 1.76177 * 125.47085 * 359.69468 * 21 20 19 26 26 N 1.30921 * 107.12615 * 359.97438 * 20 19 18 27 27 O 1.21289 * 110.06827 * 0.02562 * 26 20 19 28 28 H 1.09005 * 109.46917 * 291.99778 * 1 2 3 29 29 H 1.08995 * 109.46916 * 51.99957 * 1 2 3 30 30 H 1.09001 * 109.46878 * 171.99739 * 1 2 3 31 31 H 1.09006 * 109.46772 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47310 * 300.00178 * 3 2 1 33 33 H 1.09004 * 109.47047 * 60.00175 * 3 2 1 34 34 H 1.09004 * 109.47647 * 309.51378 * 4 2 1 35 35 H 1.09000 * 109.47289 * 69.51435 * 4 2 1 36 36 H 1.09004 * 109.47164 * 189.51661 * 4 2 1 37 37 H 1.09004 * 109.46745 * 293.72886 * 5 2 1 38 38 H 1.08999 * 109.47115 * 173.73332 * 5 2 1 39 39 H 0.96997 * 120.00269 * 179.97438 * 11 10 8 40 40 H 1.09006 * 109.46924 * 60.00623 * 17 16 6 41 41 H 1.08997 * 109.47702 * 300.00024 * 17 16 6 42 42 H 1.08005 * 122.08045 * 180.02562 * 23 22 21 43 43 H 1.08005 * 125.91051 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1994 5 6 1.9587 -0.6926 1.1994 6 6 1.3241 -2.0824 1.2806 7 1 0.2469 -1.9989 1.1371 8 6 1.9072 -2.9643 0.2068 9 1 1.2774 -3.3352 -0.5883 10 6 3.2446 -3.2976 0.2393 11 7 3.8088 -3.8563 -0.8091 12 14 4.2555 -2.9557 1.7724 13 1 4.1925 -4.1302 2.6790 14 1 5.6673 -2.7021 1.3882 15 1 3.7102 -1.7629 2.4690 16 8 1.5909 -2.6537 2.5630 17 6 0.5777 -3.5509 3.0218 18 6 0.9607 -4.0913 4.3754 19 7 0.6566 -3.5671 5.5361 20 6 1.2022 -4.3908 6.4611 21 6 1.1352 -4.2291 7.9301 22 7 1.6674 -5.0345 8.8038 23 6 1.5071 -4.7327 10.0698 24 6 0.8066 -3.6194 10.3200 25 16 0.3284 -2.9123 8.7779 26 7 1.7995 -5.3580 5.8116 27 8 1.6694 -5.1990 4.6162 28 1 -0.3633 0.3850 0.9529 29 1 -0.3633 0.6327 -0.8098 30 1 -0.3633 -1.0177 -0.1431 31 1 3.0487 1.3849 0.0005 32 1 1.5954 1.8988 -0.8899 33 1 1.5953 1.8988 0.8900 34 1 1.4633 -1.6593 -1.2885 35 1 1.7407 -0.0900 -2.0812 36 1 3.0353 -0.8420 -1.1186 37 1 1.6899 -0.1180 2.0859 38 1 3.0429 -0.7907 1.1451 39 1 4.7498 -4.0905 -0.7864 40 1 0.4769 -4.3761 2.3168 41 1 -0.3710 -3.0196 3.0974 42 1 1.9148 -5.3441 10.8613 43 1 0.5783 -3.2210 11.2976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222797461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:20 Heat of formation + Delta-G solvation = 204.398260 kcal Electronic energy + Delta-G solvation = -27597.907361 eV Core-core repulsion = 23700.843648 eV Total energy + Delta-G solvation = -3897.063713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.57513 -43.43711 -40.53015 -39.11886 -36.93187 -34.89760 -33.93694 -32.20753 -31.24988 -30.53130 -30.15795 -28.55702 -27.81176 -27.44691 -24.76893 -24.69854 -23.56926 -22.90222 -20.61068 -19.91158 -19.68965 -19.07189 -18.61103 -18.50351 -18.17923 -17.84114 -17.12800 -16.94335 -16.46539 -16.18563 -15.60762 -15.53591 -15.31745 -15.17958 -14.85370 -14.49068 -14.41606 -14.23006 -14.22200 -14.07487 -13.78845 -13.58896 -13.47239 -13.37058 -12.98692 -12.65594 -12.52612 -12.29526 -12.18975 -12.10241 -11.91958 -11.48034 -10.85723 -10.81592 -10.48700 -10.36661 -10.17968 -9.79568 -7.90648 -6.12274 -0.82433 0.06478 0.06783 0.27103 0.60047 1.07935 1.66142 1.86028 1.95499 2.01212 2.06175 2.15722 2.22442 2.30536 2.34406 2.82439 2.94388 3.07799 3.14997 3.16169 3.30339 3.45715 3.49212 3.53269 3.62923 3.65259 3.73273 3.93455 3.96768 4.00526 4.07201 4.12575 4.16273 4.23676 4.30497 4.36829 4.54656 4.59422 4.82116 4.84791 5.04216 5.49456 6.05324 6.53027 6.54360 6.99989 7.09593 7.65677 9.14867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.254 5.254 3 C -0.041 4.041 4 C -0.044 4.044 5 C -0.007 4.007 6 C 0.168 3.832 7 H 0.060 0.940 8 C -0.598 4.598 9 H 0.096 0.904 10 C 0.099 3.901 11 N -0.841 5.841 12 Si 0.884 3.116 13 H -0.267 1.267 14 H -0.295 1.295 15 H -0.254 1.254 16 O -0.384 6.384 17 C 0.162 3.838 18 C 0.198 3.802 19 N -0.456 5.456 20 C 0.227 3.773 21 C 0.123 3.877 22 N -0.434 5.434 23 C 0.039 3.961 24 C -0.241 4.241 25 S 0.174 5.826 26 N -0.329 5.329 27 O 0.110 5.890 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.283 0.717 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.185 0.815 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 16.830 -2.623 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 N 0.087 4.913 3 C -0.183 4.183 4 C -0.183 4.183 5 C -0.128 4.128 6 C 0.112 3.888 7 H 0.078 0.922 8 C -0.632 4.632 9 H 0.114 0.886 10 C -0.115 4.115 11 N -0.471 5.471 12 Si 0.714 3.286 13 H -0.192 1.192 14 H -0.223 1.223 15 H -0.180 1.180 16 O -0.303 6.303 17 C 0.084 3.916 18 C -0.023 4.023 19 N -0.191 5.191 20 C -0.045 4.045 21 C -0.152 4.152 22 N -0.151 5.151 23 C -0.114 4.114 24 C -0.381 4.381 25 S 0.425 5.575 26 N -0.031 5.031 27 O 0.041 5.959 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.180 0.820 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.202 0.798 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.781 16.849 -2.441 19.156 hybrid contribution 1.020 -0.629 1.471 1.897 sum -7.761 16.220 -0.970 18.007 Atomic orbital electron populations 1.24107 0.77668 1.09342 1.07728 1.45700 1.14563 1.14111 1.16926 1.24051 1.05518 0.80669 1.08022 1.24685 1.06887 1.03402 0.83369 1.24414 1.04768 0.98368 0.85236 1.20396 0.96480 0.88926 0.82995 0.92220 1.21141 0.95850 1.36117 1.10133 0.88618 1.24992 0.97829 0.93101 0.95531 1.69859 1.13977 1.35282 1.27981 0.86883 0.77916 0.81052 0.82759 1.19220 1.22293 1.17999 1.87918 1.44031 1.60765 1.37615 1.20545 0.91253 0.95558 0.84232 1.28466 0.91328 0.85115 0.97436 1.71953 1.23190 1.26285 0.97716 1.22176 0.98875 0.90531 0.92948 1.23491 1.03384 0.96603 0.91742 1.66378 1.18768 1.28379 1.01535 1.21751 1.00412 0.97015 0.92252 1.27502 1.06366 1.01184 1.03060 1.85150 1.50244 1.25068 0.97009 1.75207 1.17985 1.20906 0.88994 1.85431 1.52934 1.38493 1.19003 0.87065 0.86882 0.85497 0.86624 0.86572 0.86967 0.81991 0.89012 0.86705 0.87375 0.85717 0.90624 0.87840 0.88673 0.79815 0.79379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.60 7.38 60.07 0.44 1.04 16 2 N -0.25 2.73 0.05 -395.62 -0.02 2.72 16 3 C -0.04 0.55 7.97 60.06 0.48 1.02 16 4 C -0.04 0.35 6.93 60.06 0.42 0.77 16 5 C -0.01 0.04 3.21 -3.82 -0.01 0.03 16 6 C 0.17 -0.38 2.00 -27.88 -0.06 -0.44 16 7 H 0.06 -0.35 5.41 -51.93 -0.28 -0.63 16 8 C -0.60 -1.52 6.12 -34.44 -0.21 -1.73 16 9 H 0.10 0.40 7.37 -52.49 -0.39 0.01 16 10 C 0.10 0.66 5.00 -17.82 -0.09 0.57 16 11 N -0.84 -8.35 13.96 55.43 0.77 -7.58 16 12 Si 0.88 6.21 24.40 -169.99 -4.15 2.07 16 13 H -0.27 -2.77 7.11 56.52 0.40 -2.37 16 14 H -0.30 -2.60 7.11 56.52 0.40 -2.20 16 15 H -0.25 -1.01 4.96 56.52 0.28 -0.73 16 16 O -0.38 -0.51 6.34 -35.23 -0.22 -0.73 16 17 C 0.16 0.00 6.36 36.01 0.23 0.23 16 18 C 0.20 0.74 8.12 -12.98 -0.11 0.63 16 19 N -0.46 -2.14 11.58 -9.90 -0.11 -2.25 16 20 C 0.23 1.49 8.12 -156.09 -1.27 0.22 16 21 C 0.12 0.67 7.54 -14.27 -0.11 0.56 16 22 N -0.43 -2.52 10.57 -11.34 -0.12 -2.64 16 23 C 0.04 0.08 11.25 -19.38 -0.22 -0.14 16 24 C -0.24 -0.03 11.36 29.21 0.33 0.30 16 25 S 0.17 0.29 23.43 -107.50 -2.52 -2.23 16 26 N -0.33 -2.62 12.21 30.97 0.38 -2.24 16 27 O 0.11 0.70 11.29 18.00 0.20 0.91 16 28 H 0.11 -1.54 8.07 -51.93 -0.42 -1.96 16 29 H 0.11 -1.67 8.03 -51.93 -0.42 -2.08 16 30 H 0.13 -1.48 6.09 -51.93 -0.32 -1.79 16 31 H 0.12 -1.47 8.14 -51.93 -0.42 -1.89 16 32 H 0.12 -1.75 8.01 -51.93 -0.42 -2.16 16 33 H 0.11 -1.62 8.10 -51.93 -0.42 -2.04 16 34 H 0.16 -0.84 4.71 -51.93 -0.24 -1.08 16 35 H 0.09 -0.99 8.00 -51.93 -0.42 -1.41 16 36 H 0.11 -0.62 7.62 -51.93 -0.40 -1.01 16 37 H 0.11 -0.87 8.06 -51.93 -0.42 -1.29 16 38 H 0.12 -0.46 4.60 -51.93 -0.24 -0.70 16 39 H 0.28 2.93 8.31 -40.82 -0.34 2.59 16 40 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 41 H 0.10 -0.34 8.08 -51.93 -0.42 -0.76 16 42 H 0.19 -0.12 8.06 -52.48 -0.42 -0.54 16 43 H 0.19 -0.61 8.06 -52.48 -0.42 -1.03 16 LS Contribution 357.23 15.07 5.38 5.38 Total: 0.00 -20.79 357.23 -6.31 -27.10 By element: Atomic # 1 Polarization: -17.82 SS G_CDS: -5.74 Total: -23.56 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.17 Total: 3.06 kcal Atomic # 7 Polarization: -12.90 SS G_CDS: 0.90 Total: -12.00 kcal Atomic # 8 Polarization: 0.20 SS G_CDS: -0.02 Total: 0.18 kcal Atomic # 14 Polarization: 6.21 SS G_CDS: -4.15 Total: 2.07 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.52 Total: -2.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -20.79 -6.31 -27.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222797461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.500 kcal (2) G-P(sol) polarization free energy of solvation -20.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds