Wall clock time and date at job start Tue Mar 31 2020 23:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 109.47078 * 2 1 4 4 C 1.46894 * 109.46978 * 240.00087 * 2 1 3 5 5 C 1.46902 * 109.47099 * 120.00331 * 2 1 3 6 6 C 1.53002 * 109.47205 * 53.72880 * 5 2 1 7 7 H 1.08994 * 109.46818 * 311.09007 * 6 5 2 8 8 C 1.50694 * 109.46710 * 71.09178 * 6 5 2 9 9 H 1.07997 * 119.99737 * 244.75808 * 8 6 5 10 10 C 1.37874 * 120.00142 * 64.76579 * 8 6 5 11 11 N 1.31515 * 120.00040 * 192.33737 * 10 8 6 12 12 Si 1.86798 * 120.00463 * 12.33363 * 10 8 6 13 13 H 1.48504 * 109.46967 * 89.84649 * 12 10 8 14 14 H 1.48493 * 109.47463 * 209.84821 * 12 10 8 15 15 H 1.48507 * 109.46846 * 329.85162 * 12 10 8 16 16 O 1.42902 * 109.47054 * 191.08958 * 6 5 2 17 17 C 1.42895 * 113.99825 * 149.99745 * 16 6 5 18 18 C 1.50701 * 109.47039 * 179.97438 * 17 16 6 19 19 N 1.30936 * 126.41313 * 90.00226 * 18 17 16 20 20 C 1.35346 * 105.57596 * 179.73668 * 19 18 17 21 21 C 1.47940 * 126.43282 * 180.02562 * 20 19 18 22 22 N 1.30201 * 125.46667 * 179.97438 * 21 20 19 23 23 C 1.31130 * 117.09891 * 179.97438 * 22 21 20 24 24 C 1.33891 * 115.83469 * 0.02562 * 23 22 21 25 25 S 1.76177 * 125.47085 * 359.69468 * 21 20 19 26 26 N 1.30921 * 107.12615 * 359.97438 * 20 19 18 27 27 O 1.21289 * 110.06827 * 0.02562 * 26 20 19 28 28 H 1.09005 * 109.46917 * 291.99778 * 1 2 3 29 29 H 1.08995 * 109.46916 * 51.99957 * 1 2 3 30 30 H 1.09001 * 109.46878 * 171.99739 * 1 2 3 31 31 H 1.09006 * 109.46772 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47310 * 300.00178 * 3 2 1 33 33 H 1.09004 * 109.47047 * 60.00175 * 3 2 1 34 34 H 1.09004 * 109.47647 * 309.51378 * 4 2 1 35 35 H 1.09000 * 109.47289 * 69.51435 * 4 2 1 36 36 H 1.09004 * 109.47164 * 189.51661 * 4 2 1 37 37 H 1.09004 * 109.46745 * 293.72886 * 5 2 1 38 38 H 1.08999 * 109.47115 * 173.73332 * 5 2 1 39 39 H 0.96997 * 120.00269 * 179.97438 * 11 10 8 40 40 H 1.09006 * 109.46924 * 60.00623 * 17 16 6 41 41 H 1.08997 * 109.47702 * 300.00024 * 17 16 6 42 42 H 1.08005 * 122.08045 * 180.02562 * 23 22 21 43 43 H 1.08005 * 125.91051 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1994 5 6 1.9587 -0.6926 1.1994 6 6 1.3241 -2.0824 1.2806 7 1 0.2469 -1.9989 1.1371 8 6 1.9072 -2.9643 0.2068 9 1 1.2774 -3.3352 -0.5883 10 6 3.2446 -3.2976 0.2393 11 7 3.8088 -3.8563 -0.8091 12 14 4.2555 -2.9557 1.7724 13 1 4.1925 -4.1302 2.6790 14 1 5.6673 -2.7021 1.3882 15 1 3.7102 -1.7629 2.4690 16 8 1.5909 -2.6537 2.5630 17 6 0.5777 -3.5509 3.0218 18 6 0.9607 -4.0913 4.3754 19 7 0.6566 -3.5671 5.5361 20 6 1.2022 -4.3908 6.4611 21 6 1.1352 -4.2291 7.9301 22 7 1.6674 -5.0345 8.8038 23 6 1.5071 -4.7327 10.0698 24 6 0.8066 -3.6194 10.3200 25 16 0.3284 -2.9123 8.7779 26 7 1.7995 -5.3580 5.8116 27 8 1.6694 -5.1990 4.6162 28 1 -0.3633 0.3850 0.9529 29 1 -0.3633 0.6327 -0.8098 30 1 -0.3633 -1.0177 -0.1431 31 1 3.0487 1.3849 0.0005 32 1 1.5954 1.8988 -0.8899 33 1 1.5953 1.8988 0.8900 34 1 1.4633 -1.6593 -1.2885 35 1 1.7407 -0.0900 -2.0812 36 1 3.0353 -0.8420 -1.1186 37 1 1.6899 -0.1180 2.0859 38 1 3.0429 -0.7907 1.1451 39 1 4.7498 -4.0905 -0.7864 40 1 0.4769 -4.3761 2.3168 41 1 -0.3710 -3.0196 3.0974 42 1 1.9148 -5.3441 10.8613 43 1 0.5783 -3.2210 11.2976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222797461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:19 Heat of formation + Delta-G solvation = 190.998442 kcal Electronic energy + Delta-G solvation = -27598.488421 eV Core-core repulsion = 23700.843648 eV Total energy + Delta-G solvation = -3897.644772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.95323 -42.69228 -40.71039 -39.11498 -37.25903 -35.17237 -34.28979 -32.10258 -31.39583 -29.53878 -29.47197 -28.54243 -27.68884 -27.66583 -25.06045 -24.36465 -23.77110 -22.61161 -20.76161 -20.00189 -19.81729 -19.32810 -18.45275 -18.06346 -17.79264 -17.61379 -17.13419 -16.90262 -16.60930 -16.19588 -15.76877 -15.71183 -15.36350 -15.06178 -14.58181 -14.46444 -14.00386 -13.89720 -13.60703 -13.54590 -13.29878 -13.20615 -13.17167 -13.06981 -12.95039 -12.78118 -12.65213 -12.61045 -12.54245 -12.16113 -12.06726 -11.82451 -11.06036 -11.05882 -10.85765 -10.64324 -10.35344 -9.96014 -8.47262 -6.54676 -1.04020 -0.15285 -0.08960 0.49940 0.78546 1.01430 1.23436 1.43243 1.51971 1.56563 1.76210 1.79915 2.23959 2.65295 2.82800 2.89329 3.13137 3.17533 3.28116 3.58692 3.82325 3.95073 4.05596 4.12836 4.22831 4.25666 4.31651 4.31947 4.35061 4.37734 4.42289 4.49390 4.62509 4.63764 4.71410 4.78015 4.81060 4.86052 4.95678 4.97794 5.25753 5.38168 5.90689 6.18862 6.40044 6.63902 6.76052 7.21561 8.61685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.242 5.242 3 C -0.046 4.046 4 C -0.039 4.039 5 C -0.001 4.001 6 C 0.158 3.842 7 H 0.110 0.890 8 C -0.545 4.545 9 H 0.083 0.917 10 C 0.074 3.926 11 N -0.901 5.901 12 Si 0.898 3.102 13 H -0.322 1.322 14 H -0.332 1.332 15 H -0.200 1.200 16 O -0.406 6.406 17 C 0.159 3.841 18 C 0.203 3.797 19 N -0.455 5.455 20 C 0.225 3.775 21 C 0.072 3.928 22 N -0.469 5.469 23 C 0.014 3.986 24 C -0.212 4.212 25 S 0.218 5.782 26 N -0.371 5.371 27 O 0.084 5.916 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.095 0.905 39 H 0.265 0.735 40 H 0.105 0.895 41 H 0.145 0.855 42 H 0.206 0.794 43 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 21.050 -1.330 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 N 0.100 4.900 3 C -0.186 4.186 4 C -0.180 4.180 5 C -0.124 4.124 6 C 0.102 3.898 7 H 0.128 0.872 8 C -0.582 4.582 9 H 0.101 0.899 10 C -0.131 4.131 11 N -0.537 5.537 12 Si 0.732 3.268 13 H -0.251 1.251 14 H -0.263 1.263 15 H -0.124 1.124 16 O -0.326 6.326 17 C 0.082 3.918 18 C -0.018 4.018 19 N -0.191 5.191 20 C -0.048 4.048 21 C -0.201 4.201 22 N -0.187 5.187 23 C -0.138 4.138 24 C -0.352 4.352 25 S 0.469 5.531 26 N -0.078 5.078 27 O 0.021 5.979 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.101 0.899 37 H 0.163 0.837 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.163 0.837 42 H 0.222 0.778 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.544 21.133 -1.165 24.603 hybrid contribution 2.003 -1.855 1.180 2.975 sum -10.541 19.278 0.016 21.972 Atomic orbital electron populations 1.24374 0.75410 1.09438 1.10317 1.45543 1.16003 1.14699 1.13774 1.24285 1.05169 0.78729 1.10415 1.24386 1.04515 1.03085 0.86012 1.24044 1.02935 0.96692 0.88681 1.20708 0.99666 0.89469 0.79915 0.87222 1.21495 0.93656 1.32967 1.10090 0.89911 1.25206 0.99104 0.94032 0.94782 1.69969 1.13038 1.40995 1.29695 0.86802 0.76581 0.80837 0.82567 1.25089 1.26266 1.12385 1.87848 1.45308 1.61043 1.38352 1.21007 0.92536 0.96089 0.82217 1.29365 0.89695 0.84021 0.98758 1.71949 1.23526 1.26042 0.97565 1.22630 0.97945 0.90155 0.94042 1.23609 1.06160 0.98950 0.91374 1.66348 1.19506 1.29744 1.03099 1.22147 1.01658 0.98455 0.91557 1.28045 1.03502 0.99557 1.04137 1.84895 1.48478 1.22918 0.96832 1.75182 1.20177 1.22752 0.89656 1.85379 1.53939 1.39881 1.18729 0.84705 0.84147 0.86728 0.87731 0.84088 0.84759 0.85137 0.85471 0.89944 0.83730 0.88636 0.92579 0.87706 0.83730 0.77769 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 1.66 7.38 127.69 0.94 2.60 16 2 N -0.24 5.88 0.05 ******* -0.07 5.81 16 3 C -0.05 1.37 7.97 127.69 1.02 2.39 16 4 C -0.04 0.65 6.93 127.69 0.89 1.53 16 5 C 0.00 0.02 3.21 86.30 0.28 0.29 16 6 C 0.16 -1.01 2.00 29.85 0.06 -0.95 16 7 H 0.11 -1.73 5.41 -2.39 -0.01 -1.74 16 8 C -0.55 -3.24 6.12 25.60 0.16 -3.08 16 9 H 0.08 0.77 7.37 -2.91 -0.02 0.74 16 10 C 0.07 1.23 5.00 84.65 0.42 1.65 16 11 N -0.90 -22.17 13.96 21.45 0.30 -21.87 16 12 Si 0.90 15.83 24.40 68.60 1.67 17.50 16 13 H -0.32 -8.57 7.11 99.48 0.71 -7.86 16 14 H -0.33 -7.66 7.11 99.48 0.71 -6.96 16 15 H -0.20 -1.64 4.96 99.48 0.49 -1.14 16 16 O -0.41 -0.59 6.34 -148.98 -0.94 -1.54 16 17 C 0.16 -0.19 6.36 71.24 0.45 0.26 16 18 C 0.20 1.69 8.12 88.35 0.72 2.41 16 19 N -0.46 -4.48 11.58 -302.43 -3.50 -7.98 16 20 C 0.22 3.36 8.12 137.07 1.11 4.48 16 21 C 0.07 0.86 7.54 87.51 0.66 1.52 16 22 N -0.47 -6.05 10.57 -189.78 -2.01 -8.06 16 23 C 0.01 0.05 11.25 83.81 0.94 1.00 16 24 C -0.21 0.40 11.36 66.83 0.76 1.16 16 25 S 0.22 0.44 23.43 -56.49 -1.32 -0.88 16 26 N -0.37 -7.11 12.21 -58.96 -0.72 -7.83 16 27 O 0.08 1.34 11.29 74.47 0.84 2.18 16 28 H 0.13 -4.55 8.07 -2.38 -0.02 -4.57 16 29 H 0.14 -4.86 8.03 -2.39 -0.02 -4.88 16 30 H 0.11 -3.09 6.09 -2.39 -0.01 -3.11 16 31 H 0.10 -2.82 8.14 -2.38 -0.02 -2.84 16 32 H 0.14 -4.85 8.01 -2.39 -0.02 -4.86 16 33 H 0.13 -4.52 8.10 -2.38 -0.02 -4.54 16 34 H 0.13 -1.32 4.71 -2.38 -0.01 -1.33 16 35 H 0.13 -3.00 8.00 -2.39 -0.02 -3.02 16 36 H 0.08 -0.75 7.62 -2.39 -0.02 -0.76 16 37 H 0.14 -3.01 8.06 -2.39 -0.02 -3.03 16 38 H 0.10 -0.76 4.60 -2.39 -0.01 -0.77 16 39 H 0.26 7.08 8.31 -92.71 -0.77 6.31 16 40 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 41 H 0.15 -1.60 8.08 -2.39 -0.02 -1.62 16 42 H 0.21 -0.40 8.06 -2.91 -0.02 -0.43 16 43 H 0.23 -2.41 8.06 -2.91 -0.02 -2.43 16 Total: 0.00 -59.90 357.23 3.48 -56.41 By element: Atomic # 1 Polarization: -49.84 SS G_CDS: 0.83 Total: -49.01 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 8.41 Total: 15.26 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -6.00 Total: -39.92 kcal Atomic # 8 Polarization: 0.75 SS G_CDS: -0.10 Total: 0.64 kcal Atomic # 14 Polarization: 15.83 SS G_CDS: 1.67 Total: 17.50 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -1.32 Total: -0.88 kcal Total: -59.90 3.48 -56.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222797461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.411 kcal (2) G-P(sol) polarization free energy of solvation -59.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds