Wall clock time and date at job start Tue Mar 31 2020 22:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.47366 * 2 1 4 4 C 1.34222 * 117.00323 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00013 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00233 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.47399 * 180.02562 * 6 4 3 8 8 C 1.46902 * 111.00040 * 66.04221 * 7 6 4 9 9 C 1.50699 * 109.46736 * 193.95638 * 8 7 6 10 10 H 1.08002 * 120.00696 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99890 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99813 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00153 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47392 * 59.99875 * 13 11 9 15 15 H 1.48498 * 109.47109 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46809 * 299.99828 * 13 11 9 17 17 C 1.46899 * 111.00103 * 190.00043 * 7 6 4 18 18 C 1.50703 * 109.47107 * 169.99758 * 17 7 6 19 19 C 1.37837 * 119.93760 * 104.72794 * 18 17 7 20 20 C 1.39693 * 119.87109 * 179.73076 * 19 18 17 21 21 C 1.47592 * 120.11995 * 180.26627 * 20 19 18 22 22 O 1.21489 * 120.00178 * 0.27089 * 21 20 19 23 23 O 1.34732 * 120.00048 * 180.27477 * 21 20 19 24 24 C 1.39724 * 119.75656 * 0.53975 * 20 19 18 25 25 C 1.37802 * 119.86900 * 359.73017 * 24 20 19 26 26 C 1.38653 * 119.93564 * 284.99645 * 18 17 7 27 27 F 1.35098 * 119.87369 * 0.02562 * 26 18 17 28 28 H 1.09001 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47346 * 300.00410 * 1 2 3 30 30 H 1.09001 * 109.47049 * 60.00221 * 1 2 3 31 31 H 1.08998 * 109.47206 * 240.00093 * 2 1 3 32 32 H 1.09001 * 109.47049 * 119.99779 * 2 1 3 33 33 H 1.08998 * 109.47243 * 59.99837 * 6 4 3 34 34 H 1.09007 * 109.47299 * 300.00078 * 6 4 3 35 35 H 1.08994 * 109.47188 * 313.95207 * 8 7 6 36 36 H 1.08999 * 109.46735 * 73.95825 * 8 7 6 37 37 H 0.96999 * 120.00134 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47043 * 289.99738 * 17 7 6 39 39 H 1.09001 * 109.47354 * 49.99799 * 17 7 6 40 40 H 1.07996 * 120.06504 * 359.97438 * 19 18 17 41 41 H 0.96705 * 117.00320 * 180.02562 * 23 21 20 42 42 H 1.07995 * 120.06598 * 179.71283 * 24 20 19 43 43 H 1.08001 * 119.93310 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3877 2.8605 0.0010 8 6 5.8842 2.2774 -1.2525 9 6 7.3337 1.8981 -1.0905 10 1 7.8357 2.0723 -0.1503 11 6 8.0190 1.3286 -2.1427 12 7 7.4076 1.1160 -3.2875 13 14 9.8155 0.8577 -1.9418 14 1 9.9470 -0.1374 -0.8474 15 1 10.3178 0.2696 -3.2094 16 1 10.6100 2.0675 -1.6089 17 6 5.9841 4.1816 0.2398 18 6 7.4645 4.0290 0.4770 19 6 8.3591 4.3771 -0.5120 20 6 9.7313 4.2404 -0.2886 21 6 10.6943 4.6171 -1.3417 22 8 10.2944 5.0515 -2.4034 23 8 12.0170 4.4790 -1.1256 24 6 10.1885 3.7403 0.9334 25 6 9.2847 3.3902 1.9129 26 6 7.9237 3.5333 1.6878 27 9 7.0421 3.1881 2.6515 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4693 0.8911 34 1 3.5851 3.4698 -0.8888 35 1 5.3013 1.3892 -1.4961 36 1 5.7873 3.0074 -2.0562 37 1 7.8896 0.7150 -4.0276 38 1 5.8192 4.8173 -0.6302 39 1 5.5208 4.6366 1.1153 40 1 8.0002 4.7586 -1.4565 41 1 12.6089 4.7392 -1.8447 42 1 11.2480 3.6282 1.1098 43 1 9.6369 3.0032 2.8577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231461302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:02 Heat of formation + Delta-G solvation = -176.187525 kcal Electronic energy + Delta-G solvation = -30626.991036 eV Core-core repulsion = 26166.688130 eV Total energy + Delta-G solvation = -4460.302906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.36667 -40.11082 -39.94418 -38.51498 -36.82644 -35.71721 -35.60567 -32.58931 -31.83555 -31.39262 -30.44072 -28.16057 -27.08372 -24.32374 -24.13684 -23.00088 -22.07197 -21.43007 -20.48410 -19.86409 -17.73589 -17.36692 -17.04130 -16.77923 -16.54123 -16.22374 -15.90667 -15.69469 -15.37449 -14.96402 -14.62219 -14.29978 -14.18250 -14.11265 -13.49682 -13.41265 -13.28738 -12.88946 -12.76353 -12.55362 -12.27954 -12.06594 -12.04224 -11.84717 -11.75013 -11.43918 -11.34444 -11.19658 -11.02431 -10.73938 -10.59586 -10.51197 -10.24272 -10.21104 -9.93618 -9.68657 -9.30026 -8.53581 -8.34878 -7.93589 -7.51530 -6.02685 -3.95440 1.07706 1.72014 2.78457 2.83668 2.98047 3.31122 3.37632 3.38686 3.43540 4.08474 4.43283 4.72526 4.84142 4.99987 5.00958 5.08948 5.14568 5.16437 5.36749 5.37527 5.42405 5.52534 5.57972 5.61354 5.70197 5.78153 5.81602 5.91450 5.95187 5.96742 6.27305 6.34662 6.50840 6.63646 6.74684 6.80761 6.82259 7.04373 7.17635 7.26976 7.74206 7.98091 8.06865 8.24618 8.31599 8.48132 9.02814 9.60840 11.08048 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.004055 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.216634 B = 6903.725896 C = 7818.379239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.454 3.546 5 O -0.465 6.465 6 C 0.068 3.932 7 N -0.522 5.522 8 C 0.183 3.817 9 C -0.490 4.490 10 H 0.073 0.927 11 C 0.062 3.938 12 N -0.891 5.891 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.265 1.265 17 C 0.109 3.891 18 C -0.084 4.084 19 C 0.034 3.966 20 C -0.154 4.154 21 C 0.533 3.467 22 O -0.516 6.516 23 O -0.518 6.518 24 C -0.043 4.043 25 C -0.183 4.183 26 C 0.146 3.854 27 F -0.131 7.131 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.049 0.951 36 H -0.008 1.008 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.407 0.593 42 H 0.135 0.865 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 6.459 8.444 11.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.294 3.706 5 O -0.348 6.348 6 C -0.061 4.061 7 N -0.248 5.248 8 C 0.059 3.941 9 C -0.528 4.528 10 H 0.091 0.909 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.709 3.291 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.190 1.190 17 C -0.018 4.018 18 C -0.085 4.085 19 C 0.015 3.985 20 C -0.155 4.155 21 C 0.379 3.621 22 O -0.406 6.406 23 O -0.330 6.330 24 C -0.062 4.062 25 C -0.202 4.202 26 C 0.126 3.874 27 F -0.110 7.110 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.010 0.990 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.158 0.842 41 H 0.264 0.736 42 H 0.153 0.847 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.529 5.709 8.694 10.983 hybrid contribution 1.072 -0.285 -1.173 1.614 sum -2.457 5.424 7.521 9.592 Atomic orbital electron populations 1.21780 0.93109 1.02580 1.03207 1.22901 0.94797 0.80914 1.02571 1.86454 1.25437 1.31849 1.85167 1.23649 0.80006 0.93240 0.73723 1.90753 1.59594 1.42530 1.41944 1.21435 0.91353 0.90189 1.03163 1.61964 1.00994 1.20433 1.41367 1.20033 0.96909 0.94768 0.82427 1.21372 0.94631 1.38504 0.98297 0.90946 1.24880 0.98119 0.95725 0.95274 1.69929 1.36609 1.43564 1.02873 0.86814 0.85709 0.79358 0.77180 1.20255 1.21738 1.19031 1.20752 0.90147 0.90624 1.00311 1.19299 0.96163 1.00864 0.92210 1.20795 0.89942 0.90764 0.96994 1.18765 0.92162 1.10526 0.94076 1.20806 0.80991 0.73777 0.86534 1.90873 1.79632 1.43324 1.26732 1.84559 1.18435 1.80851 1.49138 1.21033 0.99766 0.94075 0.91322 1.20852 0.91240 1.06719 1.01429 1.17606 0.86581 0.97040 0.86160 1.91474 1.68496 1.89332 1.61668 0.90597 0.91724 0.91641 0.91364 0.91506 0.87865 0.91545 0.93331 0.98983 0.92944 0.93626 0.90720 0.84183 0.73554 0.84694 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 37.15 0.38 -1.05 16 2 C 0.06 0.84 6.19 37.15 0.23 1.07 16 3 O -0.37 -5.88 10.22 -39.24 -0.40 -6.28 16 4 C 0.45 8.52 7.54 36.00 0.27 8.79 16 5 O -0.47 -10.77 14.20 -18.75 -0.27 -11.04 16 6 C 0.07 1.14 5.56 -4.98 -0.03 1.11 16 7 N -0.52 -10.69 4.30 -238.96 -1.03 -11.72 16 8 C 0.18 4.62 4.31 -4.98 -0.02 4.60 16 9 C -0.49 -13.20 6.34 -34.44 -0.22 -13.42 16 10 H 0.07 1.91 4.46 -52.49 -0.23 1.67 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 13 Si 0.88 22.03 29.41 -169.99 -5.00 17.03 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.26 -6.17 5.10 56.52 0.29 -5.88 16 17 C 0.11 1.90 4.76 -4.98 -0.02 1.87 16 18 C -0.08 -1.56 3.11 -104.61 -0.33 -1.89 16 19 C 0.03 0.66 6.88 -39.18 -0.27 0.39 16 20 C -0.15 -2.85 5.14 -104.98 -0.54 -3.39 16 21 C 0.53 9.84 7.01 34.55 0.24 10.08 16 22 O -0.52 -10.88 17.13 -19.26 -0.33 -11.21 16 23 O -0.52 -7.50 12.68 -40.58 -0.51 -8.01 16 24 C -0.04 -0.71 9.61 -39.19 -0.38 -1.09 16 25 C -0.18 -2.96 10.01 -39.57 -0.40 -3.35 16 26 C 0.15 2.63 6.25 -39.26 -0.25 2.39 16 27 F -0.13 -2.38 16.74 2.25 0.04 -2.34 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.10 1.38 7.93 -51.93 -0.41 0.97 16 34 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 35 H 0.05 1.38 5.80 -51.93 -0.30 1.08 16 36 H -0.01 -0.20 7.99 -51.93 -0.41 -0.61 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.05 0.75 7.82 -51.93 -0.41 0.35 16 39 H 0.07 1.08 7.87 -51.93 -0.41 0.68 16 40 H 0.14 2.84 7.59 -52.49 -0.40 2.44 16 41 H 0.41 3.91 9.11 45.56 0.42 4.33 16 42 H 0.14 1.88 7.61 -52.49 -0.40 1.48 16 43 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -35.15 367.09 -7.41 -42.56 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.76 Total: 3.61 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -1.42 Total: 7.80 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.29 Total: -37.64 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.51 Total: -36.55 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.00 Total: 17.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.15 -7.41 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231461302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.630 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds