Wall clock time and date at job start Tue Mar 31 2020 22:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.47366 * 2 1 4 4 C 1.34222 * 117.00323 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00013 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00233 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.47399 * 180.02562 * 6 4 3 8 8 C 1.46902 * 111.00040 * 66.04221 * 7 6 4 9 9 C 1.50699 * 109.46736 * 193.95638 * 8 7 6 10 10 H 1.08002 * 120.00696 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99890 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99813 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00153 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47392 * 59.99875 * 13 11 9 15 15 H 1.48498 * 109.47109 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46809 * 299.99828 * 13 11 9 17 17 C 1.46899 * 111.00103 * 190.00043 * 7 6 4 18 18 C 1.50703 * 109.47107 * 169.99758 * 17 7 6 19 19 C 1.37837 * 119.93760 * 104.72794 * 18 17 7 20 20 C 1.39693 * 119.87109 * 179.73076 * 19 18 17 21 21 C 1.47592 * 120.11995 * 180.26627 * 20 19 18 22 22 O 1.21489 * 120.00178 * 0.27089 * 21 20 19 23 23 O 1.34732 * 120.00048 * 180.27477 * 21 20 19 24 24 C 1.39724 * 119.75656 * 0.53975 * 20 19 18 25 25 C 1.37802 * 119.86900 * 359.73017 * 24 20 19 26 26 C 1.38653 * 119.93564 * 284.99645 * 18 17 7 27 27 F 1.35098 * 119.87369 * 0.02562 * 26 18 17 28 28 H 1.09001 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47346 * 300.00410 * 1 2 3 30 30 H 1.09001 * 109.47049 * 60.00221 * 1 2 3 31 31 H 1.08998 * 109.47206 * 240.00093 * 2 1 3 32 32 H 1.09001 * 109.47049 * 119.99779 * 2 1 3 33 33 H 1.08998 * 109.47243 * 59.99837 * 6 4 3 34 34 H 1.09007 * 109.47299 * 300.00078 * 6 4 3 35 35 H 1.08994 * 109.47188 * 313.95207 * 8 7 6 36 36 H 1.08999 * 109.46735 * 73.95825 * 8 7 6 37 37 H 0.96999 * 120.00134 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47043 * 289.99738 * 17 7 6 39 39 H 1.09001 * 109.47354 * 49.99799 * 17 7 6 40 40 H 1.07996 * 120.06504 * 359.97438 * 19 18 17 41 41 H 0.96705 * 117.00320 * 180.02562 * 23 21 20 42 42 H 1.07995 * 120.06598 * 179.71283 * 24 20 19 43 43 H 1.08001 * 119.93310 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3877 2.8605 0.0010 8 6 5.8842 2.2774 -1.2525 9 6 7.3337 1.8981 -1.0905 10 1 7.8357 2.0723 -0.1503 11 6 8.0190 1.3286 -2.1427 12 7 7.4076 1.1160 -3.2875 13 14 9.8155 0.8577 -1.9418 14 1 9.9470 -0.1374 -0.8474 15 1 10.3178 0.2696 -3.2094 16 1 10.6100 2.0675 -1.6089 17 6 5.9841 4.1816 0.2398 18 6 7.4645 4.0290 0.4770 19 6 8.3591 4.3771 -0.5120 20 6 9.7313 4.2404 -0.2886 21 6 10.6943 4.6171 -1.3417 22 8 10.2944 5.0515 -2.4034 23 8 12.0170 4.4790 -1.1256 24 6 10.1885 3.7403 0.9334 25 6 9.2847 3.3902 1.9129 26 6 7.9237 3.5333 1.6878 27 9 7.0421 3.1881 2.6515 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4693 0.8911 34 1 3.5851 3.4698 -0.8888 35 1 5.3013 1.3892 -1.4961 36 1 5.7873 3.0074 -2.0562 37 1 7.8896 0.7150 -4.0276 38 1 5.8192 4.8173 -0.6302 39 1 5.5208 4.6366 1.1153 40 1 8.0002 4.7586 -1.4565 41 1 12.6089 4.7392 -1.8447 42 1 11.2480 3.6282 1.1098 43 1 9.6369 3.0032 2.8577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231461302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:01 Heat of formation + Delta-G solvation = -200.370788 kcal Electronic energy + Delta-G solvation = -30628.039701 eV Core-core repulsion = 26166.688130 eV Total energy + Delta-G solvation = -4461.351571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.77016 -41.54471 -41.35253 -39.92918 -38.25829 -37.12474 -37.05959 -34.64230 -33.11192 -32.53102 -31.82909 -29.92477 -28.62511 -25.94053 -25.53752 -24.35045 -23.51093 -22.84664 -21.84752 -21.36135 -19.10119 -18.83822 -18.64144 -18.40468 -17.94879 -17.63727 -17.34234 -17.07489 -16.85087 -16.42097 -16.38586 -15.84779 -15.61148 -15.48827 -14.93517 -14.79221 -14.68845 -14.23077 -14.00868 -13.95650 -13.73995 -13.59109 -13.42546 -13.31593 -13.17580 -12.86916 -12.66593 -12.59813 -12.57316 -12.46835 -12.36919 -11.96205 -11.76540 -11.64553 -11.49234 -11.38691 -11.15566 -10.55610 -9.81008 -9.44701 -9.15058 -8.15300 -6.13542 -0.32456 0.35900 1.30136 1.32065 1.35664 1.40813 1.50204 1.68826 2.09136 2.40458 2.69812 3.21774 3.29330 3.40790 3.70789 3.84985 3.85629 4.00450 4.12372 4.13334 4.20042 4.29463 4.31322 4.36291 4.39583 4.58936 4.62826 4.86281 4.93926 4.96036 4.97072 5.11834 5.15352 5.17485 5.23820 5.29250 5.42226 5.50589 5.57580 5.70326 5.90052 6.08338 6.24921 6.48051 6.91382 6.95935 6.98313 7.48491 8.96361 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.004055 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.216634 B = 6903.725896 C = 7818.379239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.362 6.362 4 C 0.455 3.545 5 O -0.518 6.518 6 C 0.065 3.935 7 N -0.533 5.533 8 C 0.202 3.798 9 C -0.484 4.484 10 H 0.080 0.920 11 C 0.008 3.992 12 N -0.936 5.936 13 Si 0.927 3.073 14 H -0.275 1.275 15 H -0.301 1.301 16 H -0.240 1.240 17 C 0.106 3.894 18 C -0.099 4.099 19 C 0.016 3.984 20 C -0.166 4.166 21 C 0.534 3.466 22 O -0.552 6.552 23 O -0.503 6.503 24 C -0.036 4.036 25 C -0.174 4.174 26 C 0.140 3.860 27 F -0.132 7.132 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.011 0.989 36 H -0.033 1.033 37 H 0.255 0.745 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.430 0.570 42 H 0.167 0.833 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 7.301 11.133 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.280 6.280 4 C 0.298 3.702 5 O -0.405 6.405 6 C -0.064 4.064 7 N -0.259 5.259 8 C 0.077 3.923 9 C -0.522 4.522 10 H 0.098 0.902 11 C -0.189 4.189 12 N -0.578 5.578 13 Si 0.753 3.247 14 H -0.201 1.201 15 H -0.227 1.227 16 H -0.164 1.164 17 C -0.020 4.020 18 C -0.101 4.101 19 C -0.003 4.003 20 C -0.168 4.168 21 C 0.381 3.619 22 O -0.445 6.445 23 O -0.316 6.316 24 C -0.054 4.054 25 C -0.193 4.193 26 C 0.120 3.880 27 F -0.110 7.110 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.166 0.834 34 H 0.100 0.900 35 H 0.029 0.971 36 H -0.015 1.015 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.291 0.709 42 H 0.184 0.816 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.898 6.592 11.425 13.505 hybrid contribution 0.864 -0.469 -1.885 2.126 sum -2.035 6.123 9.540 11.517 Atomic orbital electron populations 1.21790 0.89589 1.04358 1.03914 1.23222 0.97481 0.79623 1.01805 1.86458 1.23803 1.33331 1.84372 1.24108 0.80533 0.93465 0.72143 1.90733 1.60926 1.44220 1.44662 1.21662 0.89148 0.89621 1.05929 1.61783 1.03381 1.22381 1.38347 1.19568 0.95932 0.92887 0.83957 1.21642 0.95377 1.37120 0.98075 0.90226 1.25611 1.01700 0.96363 0.95215 1.70072 1.37961 1.46012 1.03753 0.86070 0.82202 0.79811 0.76585 1.20074 1.22725 1.16384 1.20911 0.89916 0.89220 1.02000 1.19434 0.96647 1.01435 0.92556 1.20703 0.90948 0.92083 0.96555 1.19018 0.91922 1.10650 0.95206 1.20881 0.82129 0.73012 0.85873 1.90868 1.80493 1.44971 1.28128 1.84491 1.16904 1.80106 1.50140 1.21391 1.01448 0.92532 0.90072 1.21269 0.90229 1.05096 1.02657 1.17845 0.87516 0.96767 0.85843 1.91474 1.68711 1.89307 1.61521 0.88287 0.90566 0.91311 0.92944 0.91657 0.83421 0.89955 0.97096 1.01537 0.93625 0.93253 0.87117 0.86423 0.70898 0.81555 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 10.29 71.98 0.74 -1.67 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.36 -11.30 10.22 -51.34 -0.52 -11.83 16 4 C 0.45 17.18 7.54 71.23 0.54 17.72 16 5 O -0.52 -24.84 14.20 21.95 0.31 -24.53 16 6 C 0.06 2.10 5.56 85.56 0.48 2.58 16 7 N -0.53 -21.70 4.30 -909.94 -3.91 -25.61 16 8 C 0.20 10.58 4.31 85.56 0.37 10.95 16 9 C -0.48 -26.56 6.34 25.60 0.16 -26.39 16 10 H 0.08 4.17 4.46 -2.91 -0.01 4.16 16 11 C 0.01 0.48 5.46 84.66 0.46 0.94 16 12 N -0.94 -58.56 13.29 21.45 0.28 -58.28 16 13 Si 0.93 45.39 29.41 68.60 2.02 47.41 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 15 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 16 H -0.24 -10.54 5.10 99.48 0.51 -10.04 16 17 C 0.11 3.57 4.76 85.56 0.41 3.98 16 18 C -0.10 -3.59 3.11 -19.86 -0.06 -3.65 16 19 C 0.02 0.63 6.88 22.53 0.16 0.78 16 20 C -0.17 -5.87 5.14 -20.10 -0.10 -5.98 16 21 C 0.53 18.84 7.01 70.29 0.49 19.33 16 22 O -0.55 -23.21 17.13 19.87 0.34 -22.87 16 23 O -0.50 -12.90 12.68 -56.42 -0.72 -13.61 16 24 C -0.04 -1.05 9.61 22.53 0.22 -0.83 16 25 C -0.17 -4.94 10.01 22.27 0.22 -4.72 16 26 C 0.14 4.69 6.25 22.48 0.14 4.83 16 27 F -0.13 -4.41 16.74 44.97 0.75 -3.65 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.15 3.47 7.93 -2.39 -0.02 3.45 16 34 H 0.08 2.46 8.12 -2.38 -0.02 2.44 16 35 H 0.01 0.66 5.80 -2.39 -0.01 0.65 16 36 H -0.03 -1.84 7.99 -2.39 -0.02 -1.86 16 37 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.05 1.62 7.82 -2.39 -0.02 1.60 16 39 H 0.11 2.89 7.87 -2.39 -0.02 2.87 16 40 H 0.12 4.99 7.59 -2.91 -0.02 4.97 16 41 H 0.43 6.87 9.11 -74.05 -0.67 6.20 16 42 H 0.17 3.77 7.61 -2.91 -0.02 3.75 16 43 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -80.37 367.09 3.41 -76.96 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.19 Total: 16.29 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 4.66 Total: 19.72 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -3.63 Total: -83.89 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -0.59 Total: -72.84 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.75 Total: -3.65 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.02 Total: 47.41 kcal Total: -80.37 3.41 -76.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231461302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.409 kcal (2) G-P(sol) polarization free energy of solvation -80.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds