Wall clock time and date at job start Tue Mar 31 2020 23:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 117.00379 * 2 1 4 4 C 1.38734 * 120.05525 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94141 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05625 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94586 * 179.97438 * 6 5 4 8 8 S 1.81403 * 109.46916 * 89.99903 * 7 6 5 9 9 O 1.42099 * 110.53972 * 68.37711 * 8 7 6 10 10 O 1.42099 * 110.54290 * 291.62552 * 8 7 6 11 11 N 1.65601 * 104.44698 * 180.02562 * 8 7 6 12 12 C 1.46931 * 120.60529 * 269.97811 * 11 8 7 13 13 C 1.53196 * 108.77131 * 233.58060 * 12 11 8 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 16 16 H 1.08993 * 109.49877 * 58.58562 * 15 14 13 17 17 C 1.50702 * 109.49632 * 178.65052 * 15 14 13 18 18 H 1.08002 * 119.99791 * 119.99448 * 17 15 14 19 19 C 1.37878 * 119.99824 * 299.99809 * 17 15 14 20 20 N 1.31516 * 119.99838 * 179.97438 * 19 17 15 21 21 Si 1.86793 * 120.00032 * 0.02562 * 19 17 15 22 22 H 1.48501 * 109.47345 * 90.00139 * 21 19 17 23 23 H 1.48507 * 109.47049 * 209.99855 * 21 19 17 24 24 H 1.48499 * 109.47323 * 329.99538 * 21 19 17 25 25 C 1.46928 * 120.62733 * 90.00512 * 11 8 7 26 26 C 1.38266 * 120.11103 * 0.27117 * 6 5 4 27 27 C 1.38142 * 120.05569 * 359.45296 * 26 6 5 28 28 H 1.08999 * 109.46939 * 300.00467 * 1 2 3 29 29 H 1.09007 * 109.46810 * 60.00084 * 1 2 3 30 30 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.02839 * 359.95966 * 4 3 2 32 32 H 1.08003 * 119.97518 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.46694 * 330.00510 * 7 6 5 34 34 H 1.08998 * 109.47391 * 209.99618 * 7 6 5 35 35 H 1.08996 * 109.56502 * 113.80754 * 12 11 8 36 36 H 1.09001 * 109.61713 * 353.38176 * 12 11 8 37 37 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 38 38 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 39 39 H 1.09001 * 109.45915 * 181.36781 * 14 13 12 40 40 H 1.08998 * 109.46049 * 301.34328 * 14 13 12 41 41 H 0.97002 * 120.00150 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58597 * 6.59731 * 25 11 8 43 43 H 1.09001 * 109.69741 * 246.24550 * 25 11 8 44 44 H 1.08007 * 119.97145 * 179.70105 * 26 6 5 45 45 H 1.07995 * 120.02952 * 180.27206 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3021 3.6757 -0.0005 7 6 3.9863 5.0185 -0.0005 8 16 4.2615 5.5568 -1.7108 9 8 3.0251 5.8544 -2.3449 10 8 5.2294 4.7312 -2.3438 11 7 5.0110 7.0264 -1.5659 12 6 4.2230 8.2648 -1.5013 13 6 4.7318 9.2295 -2.5771 14 6 6.2387 9.4327 -2.4038 15 6 6.9590 8.0934 -2.5764 16 1 6.7383 7.6862 -3.5630 17 6 8.4453 8.3003 -2.4385 18 1 8.9925 7.7850 -1.6629 19 6 9.1066 9.1473 -3.3023 20 7 10.4036 9.3282 -3.1817 21 14 8.1599 10.0390 -4.6432 22 1 7.6797 11.3453 -4.1251 23 1 9.0500 10.2664 -5.8100 24 1 6.9976 9.2145 -5.0606 25 6 6.4760 7.1161 -1.5001 26 6 1.9212 3.6047 0.0051 27 6 1.2916 2.3751 -0.0001 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 4.0209 0.3798 0.0016 32 1 5.1347 2.5749 0.0008 33 1 4.9440 4.9381 0.5136 34 1 3.3580 5.7464 0.5128 35 1 4.3388 8.7202 -0.5178 36 1 3.1717 8.0395 -1.6803 37 1 4.2216 10.1876 -2.4774 38 1 4.5321 8.8120 -3.5640 39 1 6.5986 10.1377 -3.1533 40 1 6.4398 9.8273 -1.4079 41 1 10.8689 9.9238 -3.7897 42 1 6.9107 6.1326 -1.6779 43 1 6.7782 7.4768 -0.5168 44 1 1.3344 4.5114 0.0096 45 1 0.2131 2.3202 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259896673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:46 Heat of formation + Delta-G solvation = -79.673857 kcal Electronic energy + Delta-G solvation = -27605.132700 eV Core-core repulsion = 23715.228117 eV Total energy + Delta-G solvation = -3889.904583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.47315 -38.08241 -37.98212 -36.96451 -35.71195 -33.29484 -32.59230 -31.57072 -31.40207 -30.52958 -28.32121 -26.54674 -25.15869 -24.09007 -23.01746 -21.75511 -21.54792 -19.69413 -18.58242 -18.39112 -17.54252 -16.72183 -16.65910 -16.47314 -16.09024 -15.72841 -15.55496 -14.81152 -14.62044 -14.38125 -14.11125 -13.82370 -13.64406 -13.35874 -13.14968 -13.05017 -12.78362 -12.74881 -12.53383 -12.38529 -12.12833 -11.91140 -11.86473 -11.70136 -11.64483 -11.22345 -11.13840 -11.08747 -10.78079 -10.59711 -10.23710 -10.14245 -9.82361 -9.37764 -9.33144 -9.01161 -8.61685 -8.52569 -8.26035 -6.08517 -4.08324 0.23591 1.02428 1.13896 2.84804 2.90905 3.26891 3.40003 3.40782 3.42748 3.95502 4.14255 4.30115 4.41277 4.45260 4.55358 4.70231 4.76360 4.87987 5.00733 5.03205 5.07945 5.19851 5.23621 5.27752 5.40357 5.41158 5.55465 5.70298 5.76755 5.90068 5.95494 5.99038 6.04722 6.16415 6.20579 6.38097 6.38326 6.39104 6.50536 6.71348 6.84507 6.97525 7.01632 7.13094 7.51496 7.75407 8.47404 8.93743 9.53737 11.04276 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.002698 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.387742 B =10374.750297 C =10846.534435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.132 3.868 4 C -0.148 4.148 5 C -0.064 4.064 6 C -0.126 4.126 7 C -0.586 4.586 8 S 2.601 3.399 9 O -0.958 6.958 10 O -0.944 6.944 11 N -0.997 5.997 12 C 0.123 3.877 13 C -0.135 4.135 14 C -0.120 4.120 15 C 0.006 3.994 16 H 0.033 0.967 17 C -0.514 4.514 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.886 3.114 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.264 1.264 25 C 0.132 3.868 26 C -0.065 4.065 27 C -0.207 4.207 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.264 0.736 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.133 0.867 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.579 -12.278 9.938 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.086 3.914 4 C -0.166 4.166 5 C -0.083 4.083 6 C -0.128 4.128 7 C -0.712 4.712 8 S 2.694 3.306 9 O -0.948 6.948 10 O -0.934 6.934 11 N -0.836 5.836 12 C -0.003 4.003 13 C -0.174 4.174 14 C -0.158 4.158 15 C -0.014 4.014 16 H 0.051 0.949 17 C -0.553 4.553 18 H 0.095 0.905 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.189 1.189 25 C 0.008 3.992 26 C -0.084 4.084 27 C -0.225 4.225 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.151 0.849 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.552 -12.807 9.085 25.864 hybrid contribution -0.553 0.988 0.020 1.133 sum -21.105 -11.819 9.105 25.846 Atomic orbital electron populations 1.23096 0.78223 1.04090 1.01555 1.86080 1.21554 1.26810 1.88495 1.19123 0.92459 0.84229 0.95613 1.20455 0.91378 0.98733 1.06074 1.21056 1.00641 0.90780 0.95866 1.18926 0.93659 0.92520 1.07716 1.29734 1.10067 1.03314 1.28077 1.05400 0.74142 0.73774 0.77269 1.93542 1.45904 1.83383 1.72005 1.93601 1.60241 1.67939 1.71600 1.57766 1.16185 1.20426 1.89259 1.21394 0.94494 0.84881 0.99502 1.21937 0.98450 0.98131 0.98901 1.21947 0.92263 1.00210 1.01353 1.19429 0.95947 0.91030 0.95015 0.94894 1.20916 0.89979 1.27307 1.17059 0.90535 1.24974 0.94702 0.96306 0.97051 1.69890 1.07972 1.37607 1.38243 0.86857 0.79731 0.80240 0.81507 1.20601 1.22546 1.18910 1.21643 0.74999 1.01950 1.00567 1.20951 0.93494 0.97867 0.96136 1.21226 1.00313 0.92019 1.08992 0.92536 0.92402 0.88109 0.84446 0.84151 0.84031 0.84465 0.91695 0.89834 0.91842 0.91980 0.93297 0.91941 0.92623 0.89476 0.91744 0.84900 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.07 10.50 -19.45 -0.20 -3.27 16 3 C 0.13 1.41 6.69 -39.22 -0.26 1.14 16 4 C -0.15 -1.60 9.99 -39.43 -0.39 -2.00 16 5 C -0.06 -0.73 9.69 -39.61 -0.38 -1.12 16 6 C -0.13 -1.47 5.14 -104.60 -0.54 -2.01 16 7 C -0.59 -6.31 6.30 36.01 0.23 -6.08 16 8 S 2.60 40.17 5.43 -107.50 -0.58 39.58 16 9 O -0.96 -16.51 16.59 -57.54 -0.95 -17.46 16 10 O -0.94 -17.88 16.58 -57.54 -0.95 -18.84 16 11 N -1.00 -16.13 3.22 -113.52 -0.37 -16.50 16 12 C 0.12 1.77 6.43 -3.71 -0.02 1.74 16 13 C -0.14 -2.27 6.08 -26.61 -0.16 -2.43 16 14 C -0.12 -2.48 4.66 -26.69 -0.12 -2.60 16 15 C 0.01 0.15 1.84 -91.65 -0.17 -0.02 16 16 H 0.03 0.82 7.21 -51.93 -0.37 0.45 16 17 C -0.51 -14.01 9.15 -34.44 -0.32 -14.32 16 18 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 20 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 21 Si 0.89 21.98 24.38 -169.99 -4.15 17.84 16 22 H -0.28 -6.65 6.86 56.52 0.39 -6.26 16 23 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 25 C 0.13 2.50 5.66 -3.71 -0.02 2.48 16 26 C -0.07 -0.70 9.69 -39.61 -0.38 -1.08 16 27 C -0.21 -2.04 9.04 -39.44 -0.36 -2.39 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 33 H 0.14 1.28 8.08 -51.92 -0.42 0.86 16 34 H 0.14 1.12 8.08 -51.92 -0.42 0.70 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.07 6.86 -51.93 -0.36 0.71 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.09 3.25 -51.93 -0.17 0.92 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.09 1.67 6.86 -51.93 -0.36 1.32 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 45 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -35.13 368.06 -9.53 -44.66 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.63 Total: 0.43 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -2.01 Total: -25.61 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.41 Total: -42.87 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -2.11 Total: -39.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.15 Total: 17.84 kcal Atomic # 16 Polarization: 40.17 SS G_CDS: -0.58 Total: 39.58 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.13 -9.53 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259896673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.013 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds