Wall clock time and date at job start Tue Mar 31 2020 23:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 117.00379 * 2 1 4 4 C 1.38734 * 120.05525 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94141 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05625 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94586 * 179.97438 * 6 5 4 8 8 S 1.81403 * 109.46916 * 89.99903 * 7 6 5 9 9 O 1.42099 * 110.53972 * 68.37711 * 8 7 6 10 10 O 1.42099 * 110.54290 * 291.62552 * 8 7 6 11 11 N 1.65601 * 104.44698 * 180.02562 * 8 7 6 12 12 C 1.46931 * 120.60529 * 269.97811 * 11 8 7 13 13 C 1.53196 * 108.77131 * 233.58060 * 12 11 8 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 16 16 H 1.08993 * 109.49877 * 58.58562 * 15 14 13 17 17 C 1.50702 * 109.49632 * 178.65052 * 15 14 13 18 18 H 1.08002 * 119.99791 * 119.99448 * 17 15 14 19 19 C 1.37878 * 119.99824 * 299.99809 * 17 15 14 20 20 N 1.31516 * 119.99838 * 179.97438 * 19 17 15 21 21 Si 1.86793 * 120.00032 * 0.02562 * 19 17 15 22 22 H 1.48501 * 109.47345 * 90.00139 * 21 19 17 23 23 H 1.48507 * 109.47049 * 209.99855 * 21 19 17 24 24 H 1.48499 * 109.47323 * 329.99538 * 21 19 17 25 25 C 1.46928 * 120.62733 * 90.00512 * 11 8 7 26 26 C 1.38266 * 120.11103 * 0.27117 * 6 5 4 27 27 C 1.38142 * 120.05569 * 359.45296 * 26 6 5 28 28 H 1.08999 * 109.46939 * 300.00467 * 1 2 3 29 29 H 1.09007 * 109.46810 * 60.00084 * 1 2 3 30 30 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.02839 * 359.95966 * 4 3 2 32 32 H 1.08003 * 119.97518 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.46694 * 330.00510 * 7 6 5 34 34 H 1.08998 * 109.47391 * 209.99618 * 7 6 5 35 35 H 1.08996 * 109.56502 * 113.80754 * 12 11 8 36 36 H 1.09001 * 109.61713 * 353.38176 * 12 11 8 37 37 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 38 38 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 39 39 H 1.09001 * 109.45915 * 181.36781 * 14 13 12 40 40 H 1.08998 * 109.46049 * 301.34328 * 14 13 12 41 41 H 0.97002 * 120.00150 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58597 * 6.59731 * 25 11 8 43 43 H 1.09001 * 109.69741 * 246.24550 * 25 11 8 44 44 H 1.08007 * 119.97145 * 179.70105 * 26 6 5 45 45 H 1.07995 * 120.02952 * 180.27206 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3021 3.6757 -0.0005 7 6 3.9863 5.0185 -0.0005 8 16 4.2615 5.5568 -1.7108 9 8 3.0251 5.8544 -2.3449 10 8 5.2294 4.7312 -2.3438 11 7 5.0110 7.0264 -1.5659 12 6 4.2230 8.2648 -1.5013 13 6 4.7318 9.2295 -2.5771 14 6 6.2387 9.4327 -2.4038 15 6 6.9590 8.0934 -2.5764 16 1 6.7383 7.6862 -3.5630 17 6 8.4453 8.3003 -2.4385 18 1 8.9925 7.7850 -1.6629 19 6 9.1066 9.1473 -3.3023 20 7 10.4036 9.3282 -3.1817 21 14 8.1599 10.0390 -4.6432 22 1 7.6797 11.3453 -4.1251 23 1 9.0500 10.2664 -5.8100 24 1 6.9976 9.2145 -5.0606 25 6 6.4760 7.1161 -1.5001 26 6 1.9212 3.6047 0.0051 27 6 1.2916 2.3751 -0.0001 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 4.0209 0.3798 0.0016 32 1 5.1347 2.5749 0.0008 33 1 4.9440 4.9381 0.5136 34 1 3.3580 5.7464 0.5128 35 1 4.3388 8.7202 -0.5178 36 1 3.1717 8.0395 -1.6803 37 1 4.2216 10.1876 -2.4774 38 1 4.5321 8.8120 -3.5640 39 1 6.5986 10.1377 -3.1533 40 1 6.4398 9.8273 -1.4079 41 1 10.8689 9.9238 -3.7897 42 1 6.9107 6.1326 -1.6779 43 1 6.7782 7.4768 -0.5168 44 1 1.3344 4.5114 0.0096 45 1 0.2131 2.3202 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259896673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:45 Heat of formation + Delta-G solvation = -104.882825 kcal Electronic energy + Delta-G solvation = -27606.225843 eV Core-core repulsion = 23715.228117 eV Total energy + Delta-G solvation = -3890.997726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18668 -39.47049 -38.75817 -38.23558 -36.98558 -35.16546 -33.40771 -33.18216 -32.15208 -32.14522 -28.92649 -27.27841 -27.01339 -25.47767 -23.77007 -23.16009 -22.49694 -21.24984 -19.75132 -19.17790 -19.00287 -18.48759 -17.62882 -17.44825 -16.91884 -16.76056 -16.68661 -16.28804 -15.59986 -15.42162 -15.32367 -14.91987 -14.86260 -14.64246 -14.53710 -14.31576 -14.21488 -13.84452 -13.53416 -13.28375 -13.21483 -13.17024 -13.03535 -12.85551 -12.77911 -12.66572 -12.43199 -12.32947 -12.00547 -11.82168 -11.80382 -11.69603 -11.44167 -11.14176 -10.90378 -10.64806 -10.10274 -9.83229 -9.15601 -8.29212 -6.31688 -0.88831 0.25722 0.32856 1.27322 1.35926 1.45203 1.66903 2.29953 2.32445 2.61168 2.90429 3.06476 3.11314 3.38809 3.68676 3.80095 3.85362 4.00416 4.11854 4.22324 4.25682 4.34047 4.39076 4.42495 4.45233 4.48017 4.53092 4.65381 4.68103 4.73675 4.78081 4.91457 4.97092 5.01977 5.09308 5.13349 5.19879 5.23722 5.28309 5.40495 5.46796 5.60344 5.64987 5.71835 5.82871 6.30341 6.34618 6.75141 7.33710 8.86819 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.002698 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.387742 B =10374.750297 C =10846.534435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.126 3.874 4 C -0.165 4.165 5 C -0.077 4.077 6 C -0.150 4.150 7 C -0.550 4.550 8 S 2.592 3.408 9 O -0.982 6.982 10 O -0.994 6.994 11 N -1.002 6.002 12 C 0.117 3.883 13 C -0.136 4.136 14 C -0.119 4.119 15 C -0.001 4.001 16 H 0.006 0.994 17 C -0.513 4.513 18 H 0.047 0.953 19 C 0.015 3.985 20 N -0.946 5.946 21 Si 0.944 3.056 22 H -0.259 1.259 23 H -0.303 1.303 24 H -0.261 1.261 25 C 0.142 3.858 26 C -0.071 4.071 27 C -0.210 4.210 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.043 0.957 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.155 0.845 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.131 -11.943 11.679 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.079 3.921 4 C -0.184 4.184 5 C -0.097 4.097 6 C -0.153 4.153 7 C -0.681 4.681 8 S 2.692 3.308 9 O -0.972 6.972 10 O -0.984 6.984 11 N -0.839 5.839 12 C -0.008 4.008 13 C -0.175 4.175 14 C -0.157 4.157 15 C -0.022 4.022 16 H 0.024 0.976 17 C -0.552 4.552 18 H 0.065 0.935 19 C -0.182 4.182 20 N -0.586 5.586 21 Si 0.772 3.228 22 H -0.185 1.185 23 H -0.231 1.231 24 H -0.186 1.186 25 C 0.017 3.983 26 C -0.090 4.090 27 C -0.229 4.229 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.180 0.820 34 H 0.193 0.807 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.172 0.828 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -24.123 -12.438 10.777 29.203 hybrid contribution 0.474 0.674 -0.433 0.931 sum -23.650 -11.765 10.344 28.367 Atomic orbital electron populations 1.23414 0.76178 1.05828 1.02535 1.86067 1.23739 1.26528 1.88245 1.19332 0.92640 0.85027 0.95079 1.20679 0.92093 0.99080 1.06534 1.21278 1.01229 0.91207 0.95952 1.19111 0.94394 0.92598 1.09156 1.29393 1.12171 1.03822 1.22730 1.05476 0.73051 0.73050 0.79215 1.93500 1.46040 1.83516 1.74171 1.93538 1.61568 1.68832 1.74490 1.57634 1.14723 1.21643 1.89944 1.21673 0.95051 0.83659 1.00395 1.21960 0.95772 1.00688 0.99040 1.21833 0.94831 0.97691 1.01324 1.19412 0.93649 0.93891 0.95219 0.97594 1.21267 0.92488 1.25812 1.15601 0.93490 1.25757 0.95418 0.97551 0.99473 1.70026 1.09653 1.39174 1.39753 0.85918 0.78326 0.79955 0.78596 1.18465 1.23095 1.18558 1.21301 0.76991 1.00161 0.99846 1.21309 0.93356 0.99066 0.95289 1.21554 1.01731 0.91451 1.08139 0.91160 0.91712 0.86184 0.83659 0.83608 0.81963 0.80679 0.88113 0.87768 0.88413 0.93851 0.95136 0.90838 0.92618 0.90768 0.89789 0.82768 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.91 10.50 -92.50 -0.97 -6.88 16 3 C 0.13 2.49 6.69 22.51 0.15 2.64 16 4 C -0.17 -3.46 9.99 22.36 0.22 -3.23 16 5 C -0.08 -1.67 9.69 22.25 0.22 -1.46 16 6 C -0.15 -3.13 5.14 -19.85 -0.10 -3.23 16 7 C -0.55 -10.00 6.30 71.24 0.45 -9.55 16 8 S 2.59 76.34 5.43 -56.49 -0.31 76.03 16 9 O -0.98 -32.19 16.59 -127.65 -2.12 -34.30 16 10 O -0.99 -38.32 16.58 -127.65 -2.12 -40.43 16 11 N -1.00 -30.41 3.22 -513.05 -1.65 -32.06 16 12 C 0.12 2.92 6.43 86.36 0.56 3.48 16 13 C -0.14 -4.19 6.08 30.67 0.19 -4.00 16 14 C -0.12 -4.73 4.66 30.62 0.14 -4.59 16 15 C 0.00 -0.06 1.84 -11.46 -0.02 -0.08 16 16 H 0.01 0.30 7.21 -2.39 -0.02 0.29 16 17 C -0.51 -28.79 9.15 25.60 0.23 -28.55 16 18 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 19 C 0.02 0.89 5.45 84.65 0.46 1.36 16 20 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 21 Si 0.94 46.21 24.38 68.60 1.67 47.88 16 22 H -0.26 -11.73 6.86 99.48 0.68 -11.05 16 23 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 24 H -0.26 -12.46 6.53 99.48 0.65 -11.81 16 25 C 0.14 5.29 5.66 86.36 0.49 5.78 16 26 C -0.07 -1.30 9.69 22.25 0.22 -1.09 16 27 C -0.21 -3.59 9.04 22.36 0.20 -3.39 16 28 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 29 H 0.06 0.49 7.66 -2.38 -0.02 0.48 16 30 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.16 2.37 8.08 -2.39 -0.02 2.35 16 34 H 0.18 1.90 8.08 -2.39 -0.02 1.88 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.10 2.23 6.86 -2.39 -0.02 2.22 16 37 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.03 1.31 3.25 -2.39 -0.01 1.30 16 40 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.07 2.92 6.86 -2.39 -0.02 2.90 16 43 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.16 1.73 6.30 -2.91 -0.02 1.71 16 Total: -1.00 -80.19 368.06 0.23 -79.97 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.91 Total: 13.15 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 4.51 Total: -44.66 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -1.35 Total: -90.75 kcal Atomic # 8 Polarization: -76.41 SS G_CDS: -5.21 Total: -81.62 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Atomic # 16 Polarization: 76.34 SS G_CDS: -0.31 Total: 76.03 kcal Total: -80.19 0.23 -79.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259896673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.918 kcal (2) G-P(sol) polarization free energy of solvation -80.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds