Wall clock time and date at job start Tue Mar 31 2020 23:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00124 * 2 1 4 4 C 1.38731 * 120.05480 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94362 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05552 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.94681 * 179.97438 * 6 5 4 8 8 S 1.81398 * 109.47288 * 93.84644 * 7 6 5 9 9 O 1.42102 * 110.54183 * 59.33531 * 8 7 6 10 10 O 1.42103 * 110.54461 * 282.59034 * 8 7 6 11 11 N 1.65598 * 104.45434 * 170.96233 * 8 7 6 12 12 C 1.46503 * 119.99798 * 64.29533 * 11 8 7 13 13 C 1.50695 * 110.43587 * 44.87554 * 12 11 8 14 14 H 1.08003 * 119.99927 * 242.24893 * 13 12 11 15 15 C 1.37875 * 119.99913 * 62.23699 * 13 12 11 16 16 N 1.31518 * 119.99540 * 182.11276 * 15 13 12 17 17 Si 1.86794 * 120.00238 * 2.11755 * 15 13 12 18 18 H 1.48495 * 109.47261 * 85.31921 * 17 15 13 19 19 H 1.48508 * 109.47045 * 205.32160 * 17 15 13 20 20 H 1.48504 * 109.46826 * 325.31620 * 17 15 13 21 21 C 1.54892 * 110.48529 * 167.55827 * 12 11 8 22 22 C 1.54888 * 102.74661 * 80.73636 * 21 12 11 23 23 C 1.54258 * 104.19865 * 37.94064 * 22 21 12 24 24 C 1.53875 * 106.59854 * 336.38888 * 23 22 21 25 25 C 1.38271 * 120.10962 * 0.24838 * 6 5 4 26 26 C 1.38142 * 120.05500 * 359.46089 * 25 6 5 27 27 H 1.08996 * 109.47582 * 59.99833 * 1 2 3 28 28 H 1.08999 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47144 * 299.99469 * 1 2 3 30 30 H 1.07999 * 120.02972 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.97253 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47284 * 333.84960 * 7 6 5 33 33 H 1.08995 * 109.47680 * 213.84664 * 7 6 5 34 34 H 0.96993 * 120.00262 * 244.30130 * 11 8 7 35 35 H 0.97002 * 119.99822 * 180.02562 * 16 15 13 36 36 H 1.08999 * 110.75476 * 322.42114 * 21 12 11 37 37 H 1.08997 * 110.75599 * 199.04805 * 21 12 11 38 38 H 1.09003 * 110.48799 * 279.25727 * 22 21 12 39 39 H 1.09002 * 110.48269 * 156.62262 * 22 21 12 40 40 H 1.09005 * 110.03099 * 95.67635 * 23 22 21 41 41 H 1.09004 * 110.03676 * 217.05122 * 23 22 21 42 42 H 1.09006 * 110.02588 * 119.28463 * 24 23 22 43 43 H 1.08994 * 110.03387 * 240.66110 * 24 23 22 44 44 H 1.07998 * 119.97272 * 179.70150 * 25 6 5 45 45 H 1.08005 * 120.02831 * 180.24851 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9861 5.0184 0.0028 8 16 4.1576 5.6112 -1.7030 9 8 2.8831 5.7295 -2.3203 10 8 5.2293 4.9454 -2.3569 11 7 4.6824 7.1740 -1.5467 12 6 5.9898 7.4511 -0.9467 13 6 7.0330 6.5170 -1.5037 14 1 7.5467 5.8290 -0.8486 15 6 7.3313 6.5406 -2.8495 16 7 8.2116 5.6970 -3.3427 17 14 6.4855 7.7707 -3.9724 18 1 7.2221 9.0596 -3.9387 19 1 6.4711 7.2448 -5.3611 20 1 5.0907 7.9853 -3.5099 21 6 6.3951 8.9265 -1.1877 22 6 5.6088 9.6811 -0.0870 23 6 5.6745 8.7427 1.1356 24 6 5.9167 7.3249 0.5890 25 6 1.9211 3.6047 0.0079 26 6 1.2915 2.3751 0.0013 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 4.0208 0.3798 -0.0014 31 1 5.1345 2.5749 -0.0008 32 1 4.9732 4.9229 0.4551 33 1 3.3909 5.7290 0.5762 34 1 4.1241 7.9059 -1.8523 35 1 8.4218 5.7138 -4.2895 36 1 6.0840 9.2556 -2.1791 37 1 7.4689 9.0588 -1.0548 38 1 4.5745 9.8351 -0.3946 39 1 6.0870 10.6345 0.1377 40 1 6.4965 9.0368 1.7883 41 1 4.7327 8.7767 1.6834 42 1 6.8563 6.9309 0.9765 43 1 5.0927 6.6699 0.8718 44 1 1.3342 4.5113 0.0140 45 1 0.2129 2.3201 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259906756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:55 Heat of formation + Delta-G solvation = -64.891569 kcal Electronic energy + Delta-G solvation = -28812.258939 eV Core-core repulsion = 24922.995364 eV Total energy + Delta-G solvation = -3889.263575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.15774 -38.22345 -37.71312 -36.01711 -34.76642 -32.82051 -32.22265 -31.71268 -31.05886 -28.46705 -27.87081 -27.64938 -26.09381 -23.73803 -22.67072 -21.44181 -20.16400 -19.37219 -18.46658 -18.18255 -16.97480 -16.54761 -16.28124 -15.89910 -15.78524 -15.31975 -15.16346 -14.62874 -14.61499 -14.16184 -14.05447 -13.76803 -13.46785 -12.82549 -12.76277 -12.66378 -12.60053 -12.25343 -12.06901 -11.80395 -11.57491 -11.32358 -11.31866 -11.19554 -10.92427 -10.87146 -10.79683 -10.62618 -10.38900 -10.22433 -10.19539 -9.97988 -9.81327 -9.70172 -9.13043 -8.98588 -8.38024 -8.19516 -7.91624 -6.05410 -4.06520 0.98018 1.36648 1.59665 3.16434 3.29943 3.41340 3.48550 3.75256 3.81005 4.49618 4.53383 4.69092 4.82020 4.89539 4.94012 4.96619 5.06625 5.19608 5.26360 5.31418 5.38607 5.40181 5.49121 5.52120 5.66718 5.76780 5.87173 6.02944 6.07487 6.16244 6.19510 6.26249 6.30175 6.32856 6.36099 6.46475 6.55193 6.62216 6.65513 6.74373 6.79556 6.95033 7.09738 7.31374 7.67997 8.11027 8.47040 8.96459 9.61166 11.07669 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.004012 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.540771 B = 6976.546552 C = 7573.480483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.123 3.877 4 C -0.148 4.148 5 C -0.065 4.065 6 C -0.113 4.113 7 C -0.594 4.594 8 S 2.593 3.407 9 O -0.996 6.996 10 O -0.897 6.897 11 N -1.103 6.103 12 C 0.265 3.735 13 C -0.524 4.524 14 H 0.084 0.916 15 C 0.122 3.878 16 N -0.863 5.863 17 Si 0.867 3.133 18 H -0.283 1.283 19 H -0.299 1.299 20 H -0.250 1.250 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.069 4.069 26 C -0.207 4.207 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.135 0.865 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.393 0.607 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.130 0.870 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 -2.486 9.844 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.167 4.167 5 C -0.084 4.084 6 C -0.115 4.115 7 C -0.718 4.718 8 S 2.685 3.315 9 O -0.987 6.987 10 O -0.887 6.887 11 N -0.862 5.862 12 C 0.180 3.820 13 C -0.565 4.565 14 H 0.102 0.898 15 C -0.087 4.087 16 N -0.498 5.498 17 Si 0.697 3.303 18 H -0.210 1.210 19 H -0.227 1.227 20 H -0.175 1.175 21 C -0.164 4.164 22 C -0.164 4.164 23 C -0.157 4.157 24 C -0.180 4.180 25 C -0.088 4.088 26 C -0.226 4.226 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.225 0.775 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.125 -3.375 8.987 15.465 hybrid contribution -0.961 1.299 -0.088 1.618 sum -13.086 -2.076 8.899 15.960 Atomic orbital electron populations 1.23049 0.78587 1.03774 1.01443 1.86058 1.21260 1.27014 1.88814 1.19071 0.92441 0.84048 0.96634 1.20439 0.91253 0.98700 1.06288 1.21112 1.00843 0.90680 0.95792 1.19050 0.93422 0.93108 1.05935 1.30029 1.09289 1.02649 1.29803 1.06154 0.73669 0.74983 0.76652 1.93471 1.45171 1.86470 1.73541 1.93793 1.51092 1.75144 1.68676 1.56823 1.27925 1.24024 1.77428 1.19003 0.80524 0.93935 0.88524 1.20937 1.20203 1.20687 0.94639 0.89770 1.24720 0.92806 0.93572 0.97584 1.69843 1.32071 1.34200 1.13705 0.87401 0.81969 0.80976 0.79988 1.21018 1.22694 1.17456 1.23012 1.00639 0.95764 0.96944 1.22410 0.99861 0.97828 0.96334 1.22080 1.00206 0.96104 0.97289 1.22907 1.01706 0.95888 0.97473 1.20921 0.93699 0.97622 0.96543 1.21167 1.00004 0.92101 1.09331 0.92536 0.88353 0.92711 0.84710 0.83981 0.83603 0.85474 0.77453 0.92598 0.92677 0.89985 0.92504 0.92693 0.92477 0.93082 0.90610 0.92404 0.85243 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.94 10.50 -19.41 -0.20 -4.15 16 3 C 0.12 1.72 6.69 -39.22 -0.26 1.45 16 4 C -0.15 -2.13 9.99 -39.43 -0.39 -2.52 16 5 C -0.07 -1.02 9.68 -39.60 -0.38 -1.40 16 6 C -0.11 -1.82 5.14 -104.60 -0.54 -2.36 16 7 C -0.59 -9.57 4.38 36.00 0.16 -9.41 16 8 S 2.59 54.21 5.34 -107.50 -0.57 53.64 16 9 O -1.00 -22.29 18.08 -57.54 -1.04 -23.33 16 10 O -0.90 -22.88 13.93 -57.54 -0.80 -23.68 16 11 N -1.10 -22.01 3.15 0.95 0.00 -22.01 16 12 C 0.27 5.39 0.43 -131.31 -0.06 5.34 16 13 C -0.52 -13.30 6.56 -34.44 -0.23 -13.53 16 14 H 0.08 2.30 7.83 -52.48 -0.41 1.88 16 15 C 0.12 3.38 4.00 -17.82 -0.07 3.31 16 16 N -0.86 -25.87 13.96 55.43 0.77 -25.09 16 17 Si 0.87 21.64 23.43 -169.99 -3.98 17.66 16 18 H -0.28 -6.73 7.03 56.52 0.40 -6.33 16 19 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 20 H -0.25 -5.72 4.86 56.52 0.27 -5.44 16 21 C -0.12 -2.34 4.53 -24.74 -0.11 -2.46 16 22 C -0.13 -1.90 6.79 -25.08 -0.17 -2.07 16 23 C -0.12 -1.71 6.80 -25.62 -0.17 -1.88 16 24 C -0.14 -2.36 5.60 -25.62 -0.14 -2.50 16 25 C -0.07 -1.01 9.71 -39.60 -0.38 -1.40 16 26 C -0.21 -2.75 9.04 -39.43 -0.36 -3.11 16 27 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.15 2.26 6.78 -51.92 -0.35 1.91 16 33 H 0.13 1.68 7.60 -51.93 -0.39 1.29 16 34 H 0.39 7.19 7.74 -34.47 -0.27 6.93 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.05 1.08 4.71 -51.93 -0.24 0.84 16 37 H 0.08 1.59 8.05 -51.93 -0.42 1.17 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.30 7.69 -51.93 -0.40 0.90 16 43 H 0.06 0.86 4.20 -51.93 -0.22 0.65 16 44 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 45 H 0.13 1.33 6.30 -52.48 -0.33 1.00 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -33.68 355.96 -9.06 -42.74 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.48 Total: 10.19 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -2.12 Total: -31.33 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.78 Total: -47.11 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -2.05 Total: -51.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -3.98 Total: 17.66 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.57 Total: 53.64 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.68 -9.06 -42.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259906756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.148 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds