Wall clock time and date at job start Tue Mar 31 2020 23:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00124 * 2 1 4 4 C 1.38731 * 120.05480 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94362 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05552 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.94681 * 179.97438 * 6 5 4 8 8 S 1.81398 * 109.47288 * 93.84644 * 7 6 5 9 9 O 1.42102 * 110.54183 * 59.33531 * 8 7 6 10 10 O 1.42103 * 110.54461 * 282.59034 * 8 7 6 11 11 N 1.65598 * 104.45434 * 170.96233 * 8 7 6 12 12 C 1.46503 * 119.99798 * 64.29533 * 11 8 7 13 13 C 1.50695 * 110.43587 * 44.87554 * 12 11 8 14 14 H 1.08003 * 119.99927 * 242.24893 * 13 12 11 15 15 C 1.37875 * 119.99913 * 62.23699 * 13 12 11 16 16 N 1.31518 * 119.99540 * 182.11276 * 15 13 12 17 17 Si 1.86794 * 120.00238 * 2.11755 * 15 13 12 18 18 H 1.48495 * 109.47261 * 85.31921 * 17 15 13 19 19 H 1.48508 * 109.47045 * 205.32160 * 17 15 13 20 20 H 1.48504 * 109.46826 * 325.31620 * 17 15 13 21 21 C 1.54892 * 110.48529 * 167.55827 * 12 11 8 22 22 C 1.54888 * 102.74661 * 80.73636 * 21 12 11 23 23 C 1.54258 * 104.19865 * 37.94064 * 22 21 12 24 24 C 1.53875 * 106.59854 * 336.38888 * 23 22 21 25 25 C 1.38271 * 120.10962 * 0.24838 * 6 5 4 26 26 C 1.38142 * 120.05500 * 359.46089 * 25 6 5 27 27 H 1.08996 * 109.47582 * 59.99833 * 1 2 3 28 28 H 1.08999 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47144 * 299.99469 * 1 2 3 30 30 H 1.07999 * 120.02972 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.97253 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47284 * 333.84960 * 7 6 5 33 33 H 1.08995 * 109.47680 * 213.84664 * 7 6 5 34 34 H 0.96993 * 120.00262 * 244.30130 * 11 8 7 35 35 H 0.97002 * 119.99822 * 180.02562 * 16 15 13 36 36 H 1.08999 * 110.75476 * 322.42114 * 21 12 11 37 37 H 1.08997 * 110.75599 * 199.04805 * 21 12 11 38 38 H 1.09003 * 110.48799 * 279.25727 * 22 21 12 39 39 H 1.09002 * 110.48269 * 156.62262 * 22 21 12 40 40 H 1.09005 * 110.03099 * 95.67635 * 23 22 21 41 41 H 1.09004 * 110.03676 * 217.05122 * 23 22 21 42 42 H 1.09006 * 110.02588 * 119.28463 * 24 23 22 43 43 H 1.08994 * 110.03387 * 240.66110 * 24 23 22 44 44 H 1.07998 * 119.97272 * 179.70150 * 25 6 5 45 45 H 1.08005 * 120.02831 * 180.24851 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0561 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9861 5.0184 0.0028 8 16 4.1576 5.6112 -1.7030 9 8 2.8831 5.7295 -2.3203 10 8 5.2293 4.9454 -2.3569 11 7 4.6824 7.1740 -1.5467 12 6 5.9898 7.4511 -0.9467 13 6 7.0330 6.5170 -1.5037 14 1 7.5467 5.8290 -0.8486 15 6 7.3313 6.5406 -2.8495 16 7 8.2116 5.6970 -3.3427 17 14 6.4855 7.7707 -3.9724 18 1 7.2221 9.0596 -3.9387 19 1 6.4711 7.2448 -5.3611 20 1 5.0907 7.9853 -3.5099 21 6 6.3951 8.9265 -1.1877 22 6 5.6088 9.6811 -0.0870 23 6 5.6745 8.7427 1.1356 24 6 5.9167 7.3249 0.5890 25 6 1.9211 3.6047 0.0079 26 6 1.2915 2.3751 0.0013 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 4.0208 0.3798 -0.0014 31 1 5.1345 2.5749 -0.0008 32 1 4.9732 4.9229 0.4551 33 1 3.3909 5.7290 0.5762 34 1 4.1241 7.9059 -1.8523 35 1 8.4218 5.7138 -4.2895 36 1 6.0840 9.2556 -2.1791 37 1 7.4689 9.0588 -1.0548 38 1 4.5745 9.8351 -0.3946 39 1 6.0870 10.6345 0.1377 40 1 6.4965 9.0368 1.7883 41 1 4.7327 8.7767 1.6834 42 1 6.8563 6.9309 0.9765 43 1 5.0927 6.6699 0.8718 44 1 1.3342 4.5113 0.0140 45 1 0.2129 2.3201 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259906756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:54 Heat of formation + Delta-G solvation = -90.049709 kcal Electronic energy + Delta-G solvation = -28813.349878 eV Core-core repulsion = 24922.995364 eV Total energy + Delta-G solvation = -3890.354514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16526 -39.71302 -38.73514 -37.75224 -36.56567 -34.54553 -33.51046 -33.39777 -32.13152 -29.73833 -29.33951 -28.78976 -27.17293 -25.48709 -23.74731 -22.56222 -21.56255 -20.83336 -20.11474 -19.16867 -18.74105 -18.20605 -17.41557 -17.36902 -16.86230 -16.67265 -16.53779 -16.34425 -15.89999 -15.44799 -15.30925 -14.86072 -14.73810 -14.53715 -14.23341 -14.13240 -13.80425 -13.44968 -13.23971 -13.15355 -12.98189 -12.88250 -12.75058 -12.70243 -12.58965 -12.32930 -12.20280 -11.95055 -11.81224 -11.79234 -11.65566 -11.40779 -11.32149 -11.08023 -10.97310 -10.43690 -10.08440 -9.76836 -9.11780 -8.17212 -6.16651 -0.54290 0.27247 0.39035 1.29758 1.37293 1.43136 2.13969 2.31242 2.45945 2.64725 3.04975 3.29880 3.51471 3.55793 3.79644 3.88396 3.98867 4.05997 4.16161 4.21602 4.30366 4.36531 4.40340 4.49890 4.53110 4.68057 4.73783 4.76762 4.78404 4.92715 4.95525 4.98430 5.05263 5.14576 5.18292 5.24391 5.25513 5.35434 5.37489 5.46944 5.59888 5.66641 5.67655 5.85554 6.36656 6.42293 6.56546 6.89620 7.55008 9.00716 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.004012 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.540771 B = 6976.546552 C = 7573.480483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.331 6.331 3 C 0.125 3.875 4 C -0.163 4.163 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.562 4.562 8 S 2.587 3.413 9 O -1.013 7.013 10 O -0.956 6.956 11 N -1.103 6.103 12 C 0.261 3.739 13 C -0.513 4.513 14 H 0.050 0.950 15 C 0.072 3.928 16 N -0.925 5.925 17 Si 0.895 3.105 18 H -0.265 1.265 19 H -0.326 1.326 20 H -0.219 1.219 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.141 4.141 25 C -0.074 4.074 26 C -0.207 4.207 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.405 0.595 35 H 0.255 0.745 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.150 0.850 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.962 -1.166 12.621 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.079 3.921 4 C -0.181 4.181 5 C -0.100 4.100 6 C -0.144 4.144 7 C -0.691 4.691 8 S 2.685 3.315 9 O -1.003 7.003 10 O -0.946 6.946 11 N -0.863 5.863 12 C 0.175 3.825 13 C -0.553 4.553 14 H 0.068 0.932 15 C -0.130 4.130 16 N -0.564 5.564 17 Si 0.723 3.277 18 H -0.191 1.191 19 H -0.256 1.256 20 H -0.142 1.142 21 C -0.172 4.172 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.180 4.180 25 C -0.093 4.093 26 C -0.225 4.225 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.186 0.814 34 H 0.240 0.760 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.167 0.833 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.862 -1.981 11.731 19.828 hybrid contribution 0.040 0.665 -0.811 1.049 sum -15.822 -1.316 10.920 19.269 Atomic orbital electron populations 1.23419 0.76197 1.05850 1.02524 1.86057 1.23735 1.26287 1.88359 1.19227 0.92417 0.85037 0.95468 1.20633 0.92222 0.98732 1.06518 1.21216 1.00870 0.91485 0.96442 1.19138 0.94379 0.92641 1.08201 1.29638 1.10747 1.03920 1.24784 1.05655 0.72554 0.74733 0.78588 1.93444 1.44910 1.86589 1.75395 1.93757 1.53325 1.75758 1.71763 1.56205 1.27977 1.24158 1.77935 1.18981 0.79047 0.93625 0.90821 1.21183 1.20612 1.19980 0.93540 0.93198 1.25343 0.93439 0.94900 0.99308 1.69997 1.35464 1.37625 1.13296 0.86966 0.83347 0.80092 0.77304 1.19117 1.25584 1.14176 1.22985 1.00705 0.95234 0.98301 1.22391 1.00186 0.98292 0.94684 1.22074 1.02310 0.93466 0.97229 1.22865 1.02124 0.98636 0.94387 1.21240 0.93185 0.99086 0.95787 1.21524 1.01681 0.91250 1.08045 0.91837 0.86015 0.91113 0.83664 0.84583 0.83114 0.81448 0.76041 0.93572 0.93534 0.91283 0.90848 0.90587 0.91297 0.90120 0.91746 0.90404 0.83255 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.43 10.50 -92.36 -0.97 -8.40 16 3 C 0.12 3.22 6.69 22.51 0.15 3.37 16 4 C -0.16 -4.57 9.99 22.37 0.22 -4.34 16 5 C -0.08 -2.50 9.68 22.26 0.22 -2.29 16 6 C -0.14 -4.30 5.14 -19.85 -0.10 -4.40 16 7 C -0.56 -16.80 4.38 71.23 0.31 -16.49 16 8 S 2.59 106.18 5.34 -56.49 -0.30 105.87 16 9 O -1.01 -43.89 18.08 -127.65 -2.31 -46.20 16 10 O -0.96 -50.50 13.93 -127.65 -1.78 -52.28 16 11 N -1.10 -42.02 3.15 -150.92 -0.48 -42.49 16 12 C 0.26 10.33 0.43 3.93 0.00 10.34 16 13 C -0.51 -26.98 6.56 25.60 0.17 -26.82 16 14 H 0.05 2.89 7.83 -2.91 -0.02 2.87 16 15 C 0.07 4.19 4.00 84.65 0.34 4.53 16 16 N -0.93 -59.33 13.96 21.45 0.30 -59.04 16 17 Si 0.89 45.23 23.43 68.60 1.61 46.83 16 18 H -0.27 -12.43 7.03 99.48 0.70 -11.73 16 19 H -0.33 -17.82 7.11 99.48 0.71 -17.11 16 20 H -0.22 -9.74 4.86 99.48 0.48 -9.26 16 21 C -0.13 -4.77 4.53 31.89 0.14 -4.63 16 22 C -0.12 -3.03 6.79 31.67 0.21 -2.81 16 23 C -0.11 -2.71 6.80 31.32 0.21 -2.50 16 24 C -0.14 -4.37 5.60 31.32 0.18 -4.20 16 25 C -0.07 -1.95 9.71 22.25 0.22 -1.73 16 26 C -0.21 -4.83 9.04 22.37 0.20 -4.63 16 27 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.70 7.66 -2.38 -0.02 0.69 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.15 4.44 6.78 -2.39 -0.02 4.43 16 33 H 0.17 3.64 7.60 -2.39 -0.02 3.62 16 34 H 0.41 13.69 7.74 -96.75 -0.75 12.94 16 35 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.05 1.74 4.71 -2.39 -0.01 1.73 16 37 H 0.07 2.63 8.05 -2.39 -0.02 2.61 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.06 2.14 7.69 -2.38 -0.02 2.12 16 43 H 0.08 2.05 4.20 -2.39 -0.01 2.04 16 44 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 45 H 0.16 2.62 6.30 -2.91 -0.02 2.60 16 Total: -1.00 -79.05 355.96 -0.31 -79.36 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.03 Total: 31.64 kcal Atomic # 6 Polarization: -58.89 SS G_CDS: 3.59 Total: -55.31 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -0.18 Total: -101.53 kcal Atomic # 8 Polarization: -101.82 SS G_CDS: -5.06 Total: -106.87 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.61 Total: 46.83 kcal Atomic # 16 Polarization: 106.18 SS G_CDS: -0.30 Total: 105.87 kcal Total: -79.05 -0.31 -79.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259906756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.690 kcal (2) G-P(sol) polarization free energy of solvation -79.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds