Wall clock time and date at job start Tue Mar 31 2020 22:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42100 * 106.40143 * 178.53969 * 13 12 2 15 15 O 1.42100 * 106.40069 * 311.46178 * 13 12 2 16 16 C 1.76197 * 107.21394 * 64.99953 * 13 12 2 17 17 C 1.38297 * 120.00647 * 90.00321 * 16 13 12 18 18 C 1.37969 * 119.95678 * 180.02562 * 17 16 13 19 19 C 1.39149 * 120.21300 * 359.92141 * 18 17 16 20 20 C 1.38368 * 119.69715 * 359.96180 * 19 18 17 21 21 C 1.38102 * 120.01115 * 269.72475 * 16 13 12 22 22 C 1.50769 * 121.40426 * 180.26885 * 20 19 18 23 23 C 1.53076 * 109.68185 * 342.19106 * 22 20 19 24 24 C 1.53406 * 108.29406 * 48.20140 * 23 22 20 25 25 C 1.53004 * 109.68367 * 175.56270 * 24 23 22 26 26 C 1.53004 * 109.67914 * 55.01183 * 24 23 22 27 27 O 1.35847 * 118.49177 * 179.78316 * 19 18 17 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 33 33 H 1.07996 * 120.02141 * 0.04578 * 17 16 13 34 34 H 1.07997 * 119.89152 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.83784 * 0.03556 * 21 16 13 36 36 H 1.08996 * 109.44113 * 222.12541 * 22 20 19 37 37 H 1.09008 * 109.40393 * 102.22808 * 22 20 19 38 38 H 1.09002 * 109.69432 * 288.50734 * 23 22 20 39 39 H 1.08994 * 109.73579 * 167.92911 * 23 22 20 40 40 H 1.08995 * 109.47176 * 178.92381 * 25 24 23 41 41 H 1.09006 * 109.46882 * 298.93040 * 25 24 23 42 42 H 1.09000 * 109.46697 * 58.92304 * 25 24 23 43 43 H 1.08998 * 109.47407 * 301.06937 * 26 24 23 44 44 H 1.08998 * 109.47197 * 61.07907 * 26 24 23 45 45 H 1.09006 * 109.46673 * 181.07579 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8776 -0.7632 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1370 17 6 5.0787 0.7158 -2.3181 18 6 6.1590 1.5103 -1.9934 19 6 5.9593 2.7902 -1.4855 20 6 4.6714 3.2640 -1.3078 21 6 3.5909 2.4628 -1.6375 22 6 4.4108 4.6466 -0.7660 23 6 5.6705 5.1759 -0.0759 24 6 6.8642 4.9479 -1.0120 25 6 8.1238 5.5651 -0.4007 26 6 6.5827 5.5902 -2.3719 27 8 7.0478 3.5407 -1.1735 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 2.1109 -1.6561 -1.1950 33 1 5.2373 -0.2766 -2.7136 34 1 7.1628 1.1378 -2.1349 35 1 2.5856 2.8331 -1.5008 36 1 3.5930 4.6061 -0.0465 37 1 4.1398 5.3118 -1.5860 38 1 5.8297 4.6397 0.8597 39 1 5.5597 6.2413 0.1256 40 1 8.9733 5.3845 -1.0593 41 1 7.9800 6.6387 -0.2791 42 1 8.3152 5.1117 0.5718 43 1 5.6797 5.1547 -2.7995 44 1 6.4433 6.6638 -2.2447 45 1 7.4247 5.4098 -3.0402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260722527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:00 Heat of formation + Delta-G solvation = -103.310832 kcal Electronic energy + Delta-G solvation = -28503.521283 eV Core-core repulsion = 24612.591723 eV Total energy + Delta-G solvation = -3890.929560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07517 -37.89245 -36.66929 -35.40364 -35.24283 -34.98358 -32.67398 -32.18509 -30.33949 -28.60263 -28.24822 -27.69236 -25.21343 -24.25850 -22.99837 -22.58263 -20.92826 -19.76481 -18.49905 -17.70390 -17.37945 -16.77085 -16.35779 -16.08141 -15.44247 -15.22821 -15.02737 -14.65758 -14.35426 -14.28273 -13.57373 -13.41855 -13.31808 -13.13069 -12.74554 -12.61994 -12.51748 -12.45249 -12.21379 -12.15150 -12.06200 -11.68851 -11.56083 -11.49861 -11.40552 -11.13671 -11.07024 -10.99674 -10.83249 -10.56537 -10.47990 -10.30917 -10.27760 -10.10281 -9.17873 -8.74115 -8.63047 -8.38138 -8.25962 -6.14333 -4.21845 0.97204 1.23466 1.42637 3.01592 3.23563 3.30542 3.33399 3.51781 3.86492 4.34380 4.36158 4.38090 4.44334 4.53908 4.69359 4.77777 4.96772 5.11234 5.16105 5.17799 5.26073 5.28793 5.33801 5.43916 5.47507 5.56298 5.61163 5.69809 5.81879 5.85967 5.97004 6.02989 6.05943 6.12911 6.32819 6.35129 6.40814 6.78536 6.84049 7.05819 7.10187 7.39642 7.58504 7.70787 7.83745 8.03680 8.27934 8.81379 9.44411 10.91308 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010289 B = 0.004564 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.745970 B = 6133.623160 C = 7683.169752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.275 3.725 3 H 0.041 0.959 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.286 1.286 12 N -1.100 6.100 13 S 2.693 3.307 14 O -0.984 6.984 15 O -0.966 6.966 16 C -0.696 4.696 17 C 0.011 3.989 18 C -0.174 4.174 19 C 0.183 3.817 20 C -0.181 4.181 21 C 0.026 3.974 22 C -0.080 4.080 23 C -0.147 4.147 24 C 0.109 3.891 25 C -0.138 4.138 26 C -0.177 4.177 27 O -0.306 6.306 28 H 0.091 0.909 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.409 0.591 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.135 9.621 -6.643 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.171 3.829 3 H 0.058 0.942 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.861 5.861 13 S 2.781 3.219 14 O -0.975 6.975 15 O -0.956 6.956 16 C -0.782 4.782 17 C -0.008 4.008 18 C -0.194 4.194 19 C 0.137 3.863 20 C -0.183 4.183 21 C 0.007 3.993 22 C -0.117 4.117 23 C -0.185 4.185 24 C 0.072 3.928 25 C -0.195 4.195 26 C -0.234 4.234 27 O -0.220 6.220 28 H 0.110 0.890 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.243 0.757 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.831 9.892 -7.269 16.371 hybrid contribution 0.765 -0.475 1.519 1.766 sum 11.595 9.418 -5.750 16.006 Atomic orbital electron populations 1.22244 0.98104 0.99987 1.01469 1.18514 0.91377 0.92132 0.80874 0.94178 1.21300 1.31854 1.13171 0.90023 0.91784 1.24900 0.94866 0.94994 0.99007 1.69878 1.36196 1.22603 1.23833 0.86501 0.79278 0.79372 0.82290 1.20513 1.19868 1.21178 1.55556 1.80877 1.18413 1.31264 1.01720 0.73753 0.73393 0.72987 1.93510 1.82586 1.61822 1.59551 1.93552 1.50704 1.67033 1.84298 1.30934 1.16829 1.10893 1.19553 1.20613 0.90208 0.98574 0.91394 1.20600 1.00040 0.93320 1.05390 1.18836 0.85554 0.90842 0.91035 1.19821 0.92307 0.98718 1.07413 1.20708 0.99184 0.90730 0.88673 1.20535 0.98524 0.92131 1.00460 1.22275 0.94324 1.02718 0.99184 1.21939 0.96651 0.78608 0.95618 1.21780 0.95690 1.00426 1.01575 1.22444 1.03108 1.01432 0.96393 1.86030 1.32212 1.19739 1.84062 0.89021 0.95554 0.94887 0.92637 0.75718 0.83954 0.84741 0.83979 0.89207 0.90219 0.90160 0.89672 0.91453 0.90359 0.91381 0.91330 0.90814 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 9.29 37.16 0.35 -3.44 16 2 C 0.28 6.56 2.76 -69.09 -0.19 6.37 16 3 H 0.04 1.00 7.25 -51.93 -0.38 0.63 16 4 C -0.52 -13.48 8.76 -34.44 -0.30 -13.78 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.89 11.32 55.43 0.63 -23.26 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 N -1.10 -22.31 5.46 -5.88 -0.03 -22.34 16 13 S 2.69 51.69 5.65 -107.50 -0.61 51.09 16 14 O -0.98 -19.58 17.28 -57.17 -0.99 -20.57 16 15 O -0.97 -20.64 16.53 -57.17 -0.95 -21.59 16 16 C -0.70 -12.44 5.81 -39.61 -0.23 -12.67 16 17 C 0.01 0.18 9.52 -39.66 -0.38 -0.19 16 18 C -0.17 -2.62 9.94 -39.34 -0.39 -3.02 16 19 C 0.18 2.81 6.03 -39.20 -0.24 2.57 16 20 C -0.18 -2.81 5.18 -104.44 -0.54 -3.36 16 21 C 0.03 0.46 8.54 -39.53 -0.34 0.12 16 22 C -0.08 -0.99 5.21 -27.81 -0.14 -1.14 16 23 C -0.15 -1.56 5.10 -26.48 -0.14 -1.70 16 24 C 0.11 1.14 1.13 -90.41 -0.10 1.04 16 25 C -0.14 -1.10 8.88 37.16 0.33 -0.77 16 26 C -0.18 -1.62 8.17 37.16 0.30 -1.32 16 27 O -0.31 -4.20 9.67 -19.26 -0.19 -4.38 16 28 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 29 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.41 7.53 8.83 -34.48 -0.30 7.22 16 33 H 0.14 2.03 7.62 -52.49 -0.40 1.63 16 34 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.14 2.44 7.60 -52.48 -0.40 2.04 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.85 6.97 -51.92 -0.36 0.49 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.72 5.85 -51.93 -0.30 0.42 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -31.31 371.68 -10.28 -41.59 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.63 Total: 8.14 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: -2.10 Total: -29.67 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.60 Total: -45.60 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -2.12 Total: -46.54 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.61 Total: 51.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.31 -10.28 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260722527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.721 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds