Wall clock time and date at job start Tue Mar 31 2020 22:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42100 * 106.40143 * 178.53969 * 13 12 2 15 15 O 1.42100 * 106.40069 * 311.46178 * 13 12 2 16 16 C 1.76197 * 107.21394 * 64.99953 * 13 12 2 17 17 C 1.38297 * 120.00647 * 90.00321 * 16 13 12 18 18 C 1.37969 * 119.95678 * 180.02562 * 17 16 13 19 19 C 1.39149 * 120.21300 * 359.92141 * 18 17 16 20 20 C 1.38368 * 119.69715 * 359.96180 * 19 18 17 21 21 C 1.38102 * 120.01115 * 269.72475 * 16 13 12 22 22 C 1.50769 * 121.40426 * 180.26885 * 20 19 18 23 23 C 1.53076 * 109.68185 * 342.19106 * 22 20 19 24 24 C 1.53406 * 108.29406 * 48.20140 * 23 22 20 25 25 C 1.53004 * 109.68367 * 175.56270 * 24 23 22 26 26 C 1.53004 * 109.67914 * 55.01183 * 24 23 22 27 27 O 1.35847 * 118.49177 * 179.78316 * 19 18 17 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 33 33 H 1.07996 * 120.02141 * 0.04578 * 17 16 13 34 34 H 1.07997 * 119.89152 * 179.97438 * 18 17 16 35 35 H 1.08003 * 119.83784 * 0.03556 * 21 16 13 36 36 H 1.08996 * 109.44113 * 222.12541 * 22 20 19 37 37 H 1.09008 * 109.40393 * 102.22808 * 22 20 19 38 38 H 1.09002 * 109.69432 * 288.50734 * 23 22 20 39 39 H 1.08994 * 109.73579 * 167.92911 * 23 22 20 40 40 H 1.08995 * 109.47176 * 178.92381 * 25 24 23 41 41 H 1.09006 * 109.46882 * 298.93040 * 25 24 23 42 42 H 1.09000 * 109.46697 * 58.92304 * 25 24 23 43 43 H 1.08998 * 109.47407 * 301.06937 * 26 24 23 44 44 H 1.08998 * 109.47197 * 61.07907 * 26 24 23 45 45 H 1.09006 * 109.46673 * 181.07579 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8776 -0.7632 -3.5086 15 8 1.3246 1.0595 -2.7921 16 6 3.7927 1.1912 -2.1370 17 6 5.0787 0.7158 -2.3181 18 6 6.1590 1.5103 -1.9934 19 6 5.9593 2.7902 -1.4855 20 6 4.6714 3.2640 -1.3078 21 6 3.5909 2.4628 -1.6375 22 6 4.4108 4.6466 -0.7660 23 6 5.6705 5.1759 -0.0759 24 6 6.8642 4.9479 -1.0120 25 6 8.1238 5.5651 -0.4007 26 6 6.5827 5.5902 -2.3719 27 8 7.0478 3.5407 -1.1735 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 2.1109 -1.6561 -1.1950 33 1 5.2373 -0.2766 -2.7136 34 1 7.1628 1.1378 -2.1349 35 1 2.5856 2.8331 -1.5008 36 1 3.5930 4.6061 -0.0465 37 1 4.1398 5.3118 -1.5860 38 1 5.8297 4.6397 0.8597 39 1 5.5597 6.2413 0.1256 40 1 8.9733 5.3845 -1.0593 41 1 7.9800 6.6387 -0.2791 42 1 8.3152 5.1117 0.5718 43 1 5.6797 5.1547 -2.7995 44 1 6.4433 6.6638 -2.2447 45 1 7.4247 5.4098 -3.0402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260722527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:00 Heat of formation + Delta-G solvation = -123.440355 kcal Electronic energy + Delta-G solvation = -28504.394165 eV Core-core repulsion = 24612.591723 eV Total energy + Delta-G solvation = -3891.802441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11573 -39.02495 -38.29510 -37.22885 -36.87583 -35.95707 -34.10694 -33.67211 -31.55624 -30.11734 -29.60457 -28.36766 -27.22046 -25.29276 -24.08222 -23.74227 -22.81171 -20.98926 -19.91919 -19.10385 -18.83512 -18.01056 -17.82793 -17.53603 -17.03869 -16.42497 -16.25705 -15.97276 -15.53098 -15.41659 -15.25573 -14.58353 -14.51347 -14.32121 -14.24726 -13.99279 -13.57715 -13.51259 -13.41167 -13.34637 -13.21275 -13.08160 -13.00292 -12.95331 -12.82591 -12.82149 -12.52310 -12.37727 -12.22921 -12.14595 -12.00244 -11.77905 -11.65273 -11.29352 -11.07645 -10.58574 -10.10389 -9.95931 -9.54366 -8.13049 -6.26698 -0.48918 -0.13229 0.18732 1.44315 1.46050 1.54857 1.99960 2.17039 2.39315 2.48700 2.85810 3.16817 3.33573 3.53179 3.59811 3.64221 3.74145 3.91266 4.09001 4.13497 4.22247 4.36827 4.46033 4.52693 4.58953 4.70472 4.79390 4.79841 4.83418 4.85270 4.92139 4.96998 4.97644 5.02589 5.07307 5.11676 5.13446 5.17488 5.28352 5.30888 5.59813 5.60976 5.75526 6.03625 6.10946 6.32348 6.43128 6.83768 7.42556 8.92252 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010289 B = 0.004564 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.745970 B = 6133.623160 C = 7683.169752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.279 3.721 3 H 0.025 0.975 4 C -0.538 4.538 5 H 0.067 0.933 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.270 1.270 11 H -0.285 1.285 12 N -1.100 6.100 13 S 2.709 3.291 14 O -0.990 6.990 15 O -0.992 6.992 16 C -0.710 4.710 17 C 0.002 3.998 18 C -0.177 4.177 19 C 0.183 3.817 20 C -0.186 4.186 21 C 0.004 3.996 22 C -0.083 4.083 23 C -0.144 4.144 24 C 0.099 3.901 25 C -0.134 4.134 26 C -0.174 4.174 27 O -0.313 6.313 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.417 0.583 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.100 0.900 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.209 10.510 -6.336 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.174 3.826 3 H 0.043 0.957 4 C -0.577 4.577 5 H 0.085 0.915 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.200 1.200 10 H -0.195 1.195 11 H -0.210 1.210 12 N -0.861 5.861 13 S 2.801 3.199 14 O -0.981 6.981 15 O -0.982 6.982 16 C -0.799 4.799 17 C -0.017 4.017 18 C -0.196 4.196 19 C 0.136 3.864 20 C -0.188 4.188 21 C -0.015 4.015 22 C -0.120 4.120 23 C -0.181 4.181 24 C 0.062 3.938 25 C -0.191 4.191 26 C -0.231 4.231 27 O -0.227 6.227 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.252 0.748 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.151 0.849 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.886 10.752 -6.978 18.176 hybrid contribution 0.199 -0.658 1.390 1.551 sum 13.085 10.094 -5.588 17.445 Atomic orbital electron populations 1.22152 0.98396 1.00025 1.00657 1.18257 0.91140 0.91563 0.81647 0.95725 1.21596 1.31903 1.13364 0.90882 0.91497 1.25623 0.95069 0.95641 1.01637 1.69991 1.37013 1.23668 1.24417 0.85569 0.78833 0.78316 0.78975 1.20039 1.19461 1.21043 1.55379 1.81315 1.18985 1.30397 1.01007 0.73610 0.72915 0.72366 1.93491 1.82702 1.62297 1.59601 1.93510 1.52541 1.67515 1.84655 1.30619 1.16730 1.10999 1.21570 1.20870 0.89768 0.99533 0.91503 1.20933 1.00927 0.93193 1.04526 1.19000 0.85905 0.91235 0.90245 1.20136 0.92025 0.99895 1.06745 1.20789 0.99565 0.91241 0.89910 1.20646 0.99404 0.90976 1.01002 1.22302 0.93301 1.04361 0.98179 1.22355 0.97867 0.77029 0.96555 1.21829 0.94451 1.01765 1.01051 1.22444 1.02396 1.02855 0.95419 1.86038 1.31543 1.21584 1.83532 0.90930 0.95198 0.94344 0.92583 0.74807 0.82362 0.82168 0.84890 0.90138 0.88317 0.91694 0.86469 0.90986 0.87645 0.91950 0.93009 0.88140 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.44 9.29 71.98 0.67 -6.77 16 2 C 0.28 13.56 2.76 44.24 0.12 13.69 16 3 H 0.03 1.28 7.25 -2.39 -0.02 1.27 16 4 C -0.54 -27.79 8.76 25.60 0.22 -27.57 16 5 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -49.68 11.32 21.45 0.24 -49.44 16 8 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 N -1.10 -45.17 5.46 -172.53 -0.94 -46.12 16 13 S 2.71 105.73 5.65 -56.49 -0.32 105.41 16 14 O -0.99 -39.32 17.28 -128.00 -2.21 -41.53 16 15 O -0.99 -43.58 16.53 -128.00 -2.12 -45.70 16 16 C -0.71 -25.75 5.81 22.25 0.13 -25.62 16 17 C 0.00 0.08 9.52 22.22 0.21 0.29 16 18 C -0.18 -5.11 9.94 22.42 0.22 -4.89 16 19 C 0.18 5.44 6.03 22.52 0.14 5.57 16 20 C -0.19 -5.78 5.18 -19.75 -0.10 -5.88 16 21 C 0.00 0.16 8.54 22.30 0.19 0.35 16 22 C -0.08 -2.02 5.21 29.90 0.16 -1.86 16 23 C -0.14 -2.76 5.10 30.76 0.16 -2.61 16 24 C 0.10 1.82 1.13 -10.65 -0.01 1.81 16 25 C -0.13 -1.72 8.88 71.98 0.64 -1.08 16 26 C -0.17 -2.73 8.17 71.98 0.59 -2.14 16 27 O -0.31 -8.04 9.67 -91.84 -0.89 -8.93 16 28 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 29 H 0.03 1.38 7.64 -2.38 -0.02 1.36 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 32 H 0.42 15.40 8.83 -96.74 -0.85 14.54 16 33 H 0.16 4.36 7.62 -2.91 -0.02 4.34 16 34 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.13 4.85 7.60 -2.91 -0.02 4.83 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.10 1.98 6.97 -2.38 -0.02 1.96 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 1.00 5.85 -2.39 -0.01 0.98 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -66.58 371.68 -0.28 -66.86 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.15 Total: 30.99 kcal Atomic # 6 Polarization: -58.97 SS G_CDS: 3.78 Total: -55.19 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -0.70 Total: -95.55 kcal Atomic # 8 Polarization: -90.94 SS G_CDS: -5.22 Total: -96.16 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 105.73 SS G_CDS: -0.32 Total: 105.41 kcal Total: -66.58 -0.28 -66.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260722527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.579 kcal (2) G-P(sol) polarization free energy of solvation -66.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds