Wall clock time and date at job start Tue Mar 31 2020 23:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35895 * 116.99870 * 2 1 4 4 C 1.38759 * 120.05853 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94511 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05655 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11357 * 359.70783 * 6 5 4 8 8 C 1.38171 * 120.05385 * 0.54643 * 7 6 5 9 9 C 1.50697 * 120.03181 * 179.74932 * 8 7 6 10 10 N 1.46494 * 112.84956 * 253.68019 * 9 8 7 11 11 S 1.65608 * 120.00219 * 47.20868 * 10 9 8 12 12 O 1.42094 * 104.27691 * 305.86064 * 11 10 9 13 13 O 1.42100 * 104.27410 * 178.00274 * 11 10 9 14 14 C 1.81407 * 104.44701 * 61.93341 * 11 10 9 15 15 C 1.52999 * 109.46605 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.46653 * 179.97438 * 15 14 11 17 17 H 1.07996 * 120.00252 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99885 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99988 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99998 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47330 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47045 * 119.99777 * 20 18 16 23 23 H 1.48497 * 109.47243 * 239.99720 * 20 18 16 24 24 C 1.53788 * 113.68596 * 24.94642 * 9 8 7 25 25 C 1.53786 * 87.07752 * 139.99525 * 24 9 8 26 26 C 1.53774 * 113.61424 * 122.47912 * 9 8 7 27 27 H 1.09002 * 109.47267 * 299.99513 * 1 2 3 28 28 H 1.09008 * 109.47579 * 59.99545 * 1 2 3 29 29 H 1.09000 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02478 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.96995 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.94720 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.97508 * 180.27274 * 7 6 5 34 34 H 0.96996 * 120.00096 * 227.20826 * 10 9 8 35 35 H 1.08995 * 109.47124 * 60.00130 * 14 11 10 36 36 H 1.08999 * 109.46992 * 299.99750 * 14 11 10 37 37 H 1.08999 * 109.47289 * 299.99627 * 15 14 11 38 38 H 1.09004 * 109.47079 * 60.00517 * 15 14 11 39 39 H 0.97001 * 120.00115 * 180.02562 * 19 18 16 40 40 H 1.09000 * 113.60928 * 254.53731 * 24 9 8 41 41 H 1.08994 * 113.61508 * 25.44201 * 24 9 8 42 42 H 1.09004 * 113.60446 * 220.01631 * 25 24 9 43 43 H 1.08996 * 113.61324 * 89.11643 * 25 24 9 44 44 H 1.09003 * 113.61606 * 334.48285 * 26 9 8 45 45 H 1.08997 * 113.61720 * 105.39063 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 0.0045 8 6 3.4311 1.2848 -0.0003 9 6 4.2536 0.0221 0.0007 10 7 4.2514 -0.6592 -1.2962 11 16 4.5200 0.2025 -2.6847 12 8 3.5576 1.2470 -2.6406 13 8 4.4927 -0.7758 -3.7150 14 6 6.1946 0.8709 -2.4858 15 6 6.5640 1.6964 -3.7199 16 6 7.9550 2.2522 -3.5544 17 1 8.5189 2.0385 -2.6585 18 6 8.5073 3.0346 -4.5464 19 7 7.8204 3.2953 -5.6372 20 14 10.2311 3.7241 -4.3410 21 1 10.7861 3.2885 -3.0343 22 1 11.0980 3.2250 -5.4386 23 1 10.1795 5.2075 -4.3865 24 6 5.6584 0.2004 0.6006 25 6 5.4641 -1.1739 1.2629 26 6 3.9512 -0.9092 1.1863 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2127 2.3204 -0.0005 31 1 1.3338 4.5114 -0.0011 32 1 3.7921 4.6381 -0.0016 33 1 5.1344 2.5753 0.0085 34 1 4.0927 -1.6150 -1.3416 35 1 6.9025 0.0499 -2.3731 36 1 6.2298 1.5052 -1.6001 37 1 6.5290 1.0618 -4.6054 38 1 5.8561 2.5175 -3.8330 39 1 8.2091 3.8453 -6.3353 40 1 6.4528 0.2170 -0.1455 41 1 5.7279 1.0225 1.3128 42 1 5.8474 -1.2254 2.2820 43 1 5.7934 -2.0078 0.6430 44 1 3.5540 -0.3904 2.0589 45 1 3.3674 -1.7882 0.9133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318881555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:18 Heat of formation + Delta-G solvation = -61.236133 kcal Electronic energy + Delta-G solvation = -29130.824148 eV Core-core repulsion = 25241.719084 eV Total energy + Delta-G solvation = -3889.105064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.67484 -38.84887 -37.04424 -36.37459 -35.26261 -33.86990 -32.51829 -31.17829 -30.95037 -29.93601 -27.36068 -26.09270 -25.29867 -24.85164 -21.91408 -21.65441 -21.56333 -19.63518 -18.74626 -17.98706 -17.31611 -16.46659 -16.33010 -15.93035 -15.69578 -15.62381 -15.17879 -14.97389 -14.59418 -14.48220 -14.26509 -13.81742 -13.59174 -13.29335 -12.74448 -12.53791 -12.46921 -12.29982 -11.95943 -11.76318 -11.63083 -11.50441 -11.41752 -11.30438 -11.18232 -11.05517 -11.00275 -10.92820 -10.79117 -10.72433 -10.36948 -10.32478 -10.21154 -9.70334 -9.33626 -8.94869 -8.65524 -8.47979 -7.94613 -6.09754 -4.14932 0.91692 1.47264 1.67742 3.23312 3.26477 3.33844 3.35207 3.37083 3.94740 4.30951 4.38307 4.41323 4.61319 4.65213 4.76668 4.86846 4.91827 5.05178 5.10770 5.12956 5.19552 5.25610 5.37375 5.48488 5.58704 5.68054 5.69365 5.71883 5.73183 5.82767 5.88345 5.92713 5.98703 6.07356 6.12908 6.39008 6.47859 6.55139 6.60420 6.73995 6.94532 7.24725 7.34739 7.41455 7.51347 7.83464 8.21014 8.88697 9.49618 11.01374 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.004067 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.373593 B = 6883.064046 C = 7178.657027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.159 3.841 4 C -0.210 4.210 5 C -0.076 4.076 6 C -0.148 4.148 7 C -0.063 4.063 8 C -0.115 4.115 9 C 0.206 3.794 10 N -1.097 6.097 11 S 2.588 3.412 12 O -0.950 6.950 13 O -0.974 6.974 14 C -0.593 4.593 15 C 0.030 3.970 16 C -0.517 4.517 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.165 4.165 25 C -0.138 4.138 26 C -0.116 4.116 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.413 0.587 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.031 0.969 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 -6.018 17.355 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.113 3.887 4 C -0.229 4.229 5 C -0.094 4.094 6 C -0.167 4.167 7 C -0.082 4.082 8 C -0.117 4.117 9 C 0.116 3.884 10 N -0.852 5.852 11 S 2.685 3.315 12 O -0.940 6.940 13 O -0.965 6.965 14 C -0.726 4.726 15 C -0.008 4.008 16 C -0.556 4.556 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.204 4.204 25 C -0.176 4.176 26 C -0.155 4.155 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.246 0.754 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.503 -5.880 16.467 21.496 hybrid contribution 1.102 0.280 0.166 1.149 sum -11.401 -5.600 16.633 20.928 Atomic orbital electron populations 1.23015 0.79218 1.03510 1.01156 1.86087 1.20559 1.26981 1.88532 1.18594 0.91341 0.83967 0.94795 1.21091 0.99486 0.92545 1.09789 1.20866 0.94741 0.96700 0.97105 1.20954 0.93838 0.98310 1.03564 1.20884 1.00002 0.91078 0.96240 1.18982 0.90605 0.94389 1.07757 1.19518 0.94423 0.90263 0.84196 1.55531 1.88870 1.20668 1.20130 1.05689 0.78741 0.74549 0.72501 1.93588 1.57318 1.57855 1.85196 1.93540 1.88134 1.60042 1.54765 1.30592 1.19932 1.11394 1.10642 1.18934 0.98986 0.94332 0.88598 1.21034 0.99114 1.31453 1.04028 0.92008 1.25060 0.98088 0.96169 0.95139 1.69970 1.37375 1.37985 1.07540 0.86447 0.84036 0.78797 0.78207 1.19627 1.20844 1.20833 1.23756 0.96878 0.98623 1.01168 1.22806 0.96271 0.97459 1.01016 1.23057 0.96563 0.99057 0.96831 0.93004 0.92730 0.88617 0.85976 0.86207 0.85835 0.85227 0.75358 0.86323 0.86214 0.95109 0.94839 0.92646 0.89688 0.88511 0.91169 0.89870 0.89262 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.02 9.14 -19.41 -0.18 -4.20 16 3 C 0.16 2.30 6.25 -39.21 -0.25 2.06 16 4 C -0.21 -2.81 9.04 -39.43 -0.36 -3.17 16 5 C -0.08 -1.00 10.04 -39.61 -0.40 -1.39 16 6 C -0.15 -2.08 10.04 -39.56 -0.40 -2.47 16 7 C -0.06 -0.93 8.49 -39.60 -0.34 -1.27 16 8 C -0.12 -1.69 2.92 -104.47 -0.30 -1.99 16 9 C 0.21 2.67 0.75 -132.16 -0.10 2.57 16 10 N -1.10 -15.87 5.59 0.26 0.00 -15.87 16 11 S 2.59 49.62 5.37 -107.50 -0.58 49.04 16 12 O -0.95 -20.34 15.16 -57.54 -0.87 -21.21 16 13 O -0.97 -21.69 18.08 -57.54 -1.04 -22.73 16 14 C -0.59 -11.69 4.56 37.16 0.17 -11.52 16 15 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 16 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.17 -1.87 5.74 -25.91 -0.15 -2.02 16 25 C -0.14 -1.31 7.99 -25.92 -0.21 -1.51 16 26 C -0.12 -1.20 6.29 -25.92 -0.16 -1.36 16 27 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.05 0.51 7.66 -51.92 -0.40 0.11 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.12 1.32 6.30 -52.49 -0.33 0.98 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.73 6.17 -52.48 -0.32 1.41 16 34 H 0.41 5.11 8.73 -34.47 -0.30 4.81 16 35 H 0.12 2.12 8.07 -51.93 -0.42 1.70 16 36 H 0.12 2.11 6.06 -51.92 -0.31 1.79 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.08 1.02 5.81 -51.93 -0.30 0.72 16 41 H 0.10 0.97 7.26 -51.93 -0.38 0.60 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -35.91 371.77 -9.90 -45.81 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.51 Total: 6.48 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: -2.04 Total: -33.22 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.74 Total: -41.74 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -2.09 Total: -48.14 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 49.62 SS G_CDS: -0.58 Total: 49.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.91 -9.90 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318881555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.426 kcal (2) G-P(sol) polarization free energy of solvation -35.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds