Wall clock time and date at job start Tue Mar 31 2020 23:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35895 * 116.99870 * 2 1 4 4 C 1.38759 * 120.05853 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94511 * 180.02562 * 4 3 2 6 6 C 1.38282 * 120.05655 * 0.02562 * 5 4 3 7 7 C 1.38246 * 120.11357 * 359.70783 * 6 5 4 8 8 C 1.38171 * 120.05385 * 0.54643 * 7 6 5 9 9 C 1.50697 * 120.03181 * 179.74932 * 8 7 6 10 10 N 1.46494 * 112.84956 * 253.68019 * 9 8 7 11 11 S 1.65608 * 120.00219 * 47.20868 * 10 9 8 12 12 O 1.42094 * 104.27691 * 305.86064 * 11 10 9 13 13 O 1.42100 * 104.27410 * 178.00274 * 11 10 9 14 14 C 1.81407 * 104.44701 * 61.93341 * 11 10 9 15 15 C 1.52999 * 109.46605 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.46653 * 179.97438 * 15 14 11 17 17 H 1.07996 * 120.00252 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99885 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99988 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99998 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47330 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47045 * 119.99777 * 20 18 16 23 23 H 1.48497 * 109.47243 * 239.99720 * 20 18 16 24 24 C 1.53788 * 113.68596 * 24.94642 * 9 8 7 25 25 C 1.53786 * 87.07752 * 139.99525 * 24 9 8 26 26 C 1.53774 * 113.61424 * 122.47912 * 9 8 7 27 27 H 1.09002 * 109.47267 * 299.99513 * 1 2 3 28 28 H 1.09008 * 109.47579 * 59.99545 * 1 2 3 29 29 H 1.09000 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.02478 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.96995 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.94720 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.97508 * 180.27274 * 7 6 5 34 34 H 0.96996 * 120.00096 * 227.20826 * 10 9 8 35 35 H 1.08995 * 109.47124 * 60.00130 * 14 11 10 36 36 H 1.08999 * 109.46992 * 299.99750 * 14 11 10 37 37 H 1.08999 * 109.47289 * 299.99627 * 15 14 11 38 38 H 1.09004 * 109.47079 * 60.00517 * 15 14 11 39 39 H 0.97001 * 120.00115 * 180.02562 * 19 18 16 40 40 H 1.09000 * 113.60928 * 254.53731 * 24 9 8 41 41 H 1.08994 * 113.61508 * 25.44201 * 24 9 8 42 42 H 1.09004 * 113.60446 * 220.01631 * 25 24 9 43 43 H 1.08996 * 113.61324 * 89.11643 * 25 24 9 44 44 H 1.09003 * 113.61606 * 334.48285 * 26 9 8 45 45 H 1.08997 * 113.61720 * 105.39063 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 0.0045 8 6 3.4311 1.2848 -0.0003 9 6 4.2536 0.0221 0.0007 10 7 4.2514 -0.6592 -1.2962 11 16 4.5200 0.2025 -2.6847 12 8 3.5576 1.2470 -2.6406 13 8 4.4927 -0.7758 -3.7150 14 6 6.1946 0.8709 -2.4858 15 6 6.5640 1.6964 -3.7199 16 6 7.9550 2.2522 -3.5544 17 1 8.5189 2.0385 -2.6585 18 6 8.5073 3.0346 -4.5464 19 7 7.8204 3.2953 -5.6372 20 14 10.2311 3.7241 -4.3410 21 1 10.7861 3.2885 -3.0343 22 1 11.0980 3.2250 -5.4386 23 1 10.1795 5.2075 -4.3865 24 6 5.6584 0.2004 0.6006 25 6 5.4641 -1.1739 1.2629 26 6 3.9512 -0.9092 1.1863 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2127 2.3204 -0.0005 31 1 1.3338 4.5114 -0.0011 32 1 3.7921 4.6381 -0.0016 33 1 5.1344 2.5753 0.0085 34 1 4.0927 -1.6150 -1.3416 35 1 6.9025 0.0499 -2.3731 36 1 6.2298 1.5052 -1.6001 37 1 6.5290 1.0618 -4.6054 38 1 5.8561 2.5175 -3.8330 39 1 8.2091 3.8453 -6.3353 40 1 6.4528 0.2170 -0.1455 41 1 5.7279 1.0225 1.3128 42 1 5.8474 -1.2254 2.2820 43 1 5.7934 -2.0078 0.6430 44 1 3.5540 -0.3904 2.0589 45 1 3.3674 -1.7882 0.9133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318881555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:17 Heat of formation + Delta-G solvation = -86.408283 kcal Electronic energy + Delta-G solvation = -29131.915694 eV Core-core repulsion = 25241.719084 eV Total energy + Delta-G solvation = -3890.196610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.63413 -39.76320 -38.13047 -37.90331 -36.91690 -35.89823 -33.63592 -33.14626 -31.99121 -30.92099 -28.17346 -27.69664 -26.56359 -25.79911 -23.53732 -22.86128 -22.60205 -20.75856 -20.03932 -19.17240 -18.80586 -18.24960 -17.44376 -17.10511 -16.87540 -16.65220 -16.52299 -16.48834 -16.13193 -15.61861 -15.24729 -15.14421 -14.64683 -14.55748 -14.46185 -13.80318 -13.66723 -13.50501 -13.18647 -13.14464 -12.99344 -12.95231 -12.83051 -12.75222 -12.72778 -12.43893 -12.27552 -12.12751 -12.00891 -11.90175 -11.80478 -11.66434 -11.57720 -11.15552 -11.02966 -10.64178 -10.26093 -9.69113 -8.95911 -8.24247 -6.38018 -0.63760 0.43502 0.63702 1.42007 1.42481 1.55886 1.87479 2.39262 2.48101 2.81433 2.90931 3.09487 3.30658 3.49953 3.70557 3.75083 3.93594 3.96828 4.08125 4.09965 4.17932 4.27609 4.36797 4.42354 4.52814 4.60754 4.72209 4.74642 4.82105 4.89661 4.92147 4.93764 5.11727 5.14202 5.18845 5.24238 5.27662 5.28663 5.47369 5.51890 5.62360 5.69933 5.71302 5.96046 6.07543 6.18714 6.56697 6.75595 7.32139 8.88465 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.004067 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.373593 B = 6883.064046 C = 7178.657027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.143 3.857 4 C -0.221 4.221 5 C -0.084 4.084 6 C -0.168 4.168 7 C -0.083 4.083 8 C -0.131 4.131 9 C 0.189 3.811 10 N -1.079 6.079 11 S 2.607 3.393 12 O -0.975 6.975 13 O -1.010 7.010 14 C -0.587 4.587 15 C 0.027 3.973 16 C -0.533 4.533 17 H 0.078 0.922 18 C -0.003 4.003 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.254 1.254 22 H -0.280 1.280 23 H -0.278 1.278 24 C -0.170 4.170 25 C -0.128 4.128 26 C -0.105 4.105 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.424 0.576 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.000 1.000 38 H 0.006 0.994 39 H 0.266 0.734 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 -6.627 19.827 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.097 3.903 4 C -0.240 4.240 5 C -0.102 4.102 6 C -0.186 4.186 7 C -0.101 4.101 8 C -0.133 4.133 9 C 0.100 3.900 10 N -0.838 5.838 11 S 2.705 3.295 12 O -0.964 6.964 13 O -1.000 7.000 14 C -0.719 4.719 15 C -0.012 4.012 16 C -0.572 4.572 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.796 3.204 21 H -0.177 1.177 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.209 4.209 25 C -0.165 4.165 26 C -0.144 4.144 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.261 0.739 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.018 0.982 38 H 0.024 0.976 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.984 -6.506 18.950 23.347 hybrid contribution 0.808 0.454 -0.567 1.086 sum -11.176 -6.052 18.384 22.349 Atomic orbital electron populations 1.23299 0.77427 1.05279 1.01778 1.86056 1.22464 1.26440 1.88393 1.18857 0.91738 0.84805 0.94855 1.21449 1.00782 0.92410 1.09336 1.21220 0.94763 0.97777 0.96406 1.21258 0.94600 0.98809 1.03952 1.21106 1.00496 0.91621 0.96897 1.19220 0.91172 0.94933 1.08014 1.19898 0.95795 0.90495 0.83798 1.55032 1.88271 1.21020 1.19527 1.04813 0.78018 0.73922 0.72797 1.93555 1.57916 1.59058 1.85888 1.93485 1.88392 1.60941 1.57191 1.30480 1.21284 1.11675 1.08487 1.18760 0.98315 0.93812 0.90290 1.21514 0.99861 1.31254 1.04550 0.90433 1.26102 1.02796 0.96549 0.94683 1.70120 1.39689 1.39045 1.08681 0.85284 0.78272 0.77939 0.78885 1.17700 1.20545 1.20375 1.23836 0.95245 1.00460 1.01312 1.22803 0.95378 0.96285 1.02038 1.23029 0.97445 0.98443 0.95475 0.91157 0.93282 0.86378 0.83820 0.83827 0.84753 0.84790 0.73925 0.84212 0.84044 0.98193 0.97609 0.92481 0.90484 0.87350 0.89235 0.89379 0.88509 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -7.90 9.14 -92.37 -0.84 -8.74 16 3 C 0.14 4.03 6.25 22.51 0.14 4.17 16 4 C -0.22 -5.69 9.04 22.37 0.20 -5.49 16 5 C -0.08 -2.13 10.04 22.25 0.22 -1.91 16 6 C -0.17 -4.66 10.04 22.28 0.22 -4.44 16 7 C -0.08 -2.40 8.49 22.26 0.19 -2.21 16 8 C -0.13 -3.74 2.92 -19.77 -0.06 -3.80 16 9 C 0.19 4.61 0.75 3.38 0.00 4.62 16 10 N -1.08 -30.12 5.59 -153.10 -0.86 -30.97 16 11 S 2.61 101.00 5.37 -56.49 -0.30 100.70 16 12 O -0.97 -42.60 15.16 -127.65 -1.94 -44.54 16 13 O -1.01 -45.83 18.08 -127.65 -2.31 -48.14 16 14 C -0.59 -23.20 4.56 71.98 0.33 -22.87 16 15 C 0.03 1.45 4.98 29.85 0.15 1.59 16 16 C -0.53 -29.54 9.11 25.60 0.23 -29.30 16 17 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 19 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 20 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 21 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.17 -3.47 5.74 31.12 0.18 -3.30 16 25 C -0.13 -2.02 7.99 31.12 0.25 -1.77 16 26 C -0.10 -1.89 6.29 31.12 0.20 -1.70 16 27 H 0.07 0.89 7.66 -2.39 -0.02 0.88 16 28 H 0.05 0.86 7.66 -2.38 -0.02 0.84 16 29 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.14 2.88 6.30 -2.91 -0.02 2.86 16 31 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.13 3.24 8.06 -2.91 -0.02 3.21 16 33 H 0.13 3.55 6.17 -2.91 -0.02 3.53 16 34 H 0.42 9.92 8.73 -96.75 -0.84 9.07 16 35 H 0.14 4.86 8.07 -2.39 -0.02 4.85 16 36 H 0.14 4.91 6.06 -2.39 -0.01 4.90 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.08 1.69 5.81 -2.39 -0.01 1.68 16 41 H 0.11 1.95 7.26 -2.39 -0.02 1.94 16 42 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.10 1.63 8.09 -2.39 -0.02 1.61 16 45 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 Total: -1.00 -78.99 371.77 0.06 -78.93 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.16 Total: 29.29 kcal Atomic # 6 Polarization: -68.55 SS G_CDS: 3.83 Total: -64.72 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -0.57 Total: -88.06 kcal Atomic # 8 Polarization: -96.33 SS G_CDS: -5.09 Total: -101.42 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 101.00 SS G_CDS: -0.30 Total: 100.70 kcal Total: -78.99 0.06 -78.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318881555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.474 kcal (2) G-P(sol) polarization free energy of solvation -78.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds