Wall clock time and date at job start Tue Mar 31 2020 22:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46825 * 240.00089 * 2 1 3 5 5 H 1.07994 * 120.00353 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46769 * 90.00151 * 8 6 4 10 10 H 1.48493 * 109.47324 * 210.00220 * 8 6 4 11 11 H 1.48499 * 109.47110 * 330.00316 * 8 6 4 12 12 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 13 13 O 1.20833 * 119.99595 * 120.00186 * 12 2 1 14 14 O 1.34224 * 120.00302 * 299.99657 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47021 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00041 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.46500 * 120.00169 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47364 * 179.97438 * 19 18 16 21 21 O 1.42907 * 109.46704 * 64.99886 * 20 19 18 22 22 C 1.35942 * 116.99823 * 179.97438 * 21 20 19 23 23 C 1.38706 * 120.03225 * 359.72906 * 22 21 20 24 24 C 1.38148 * 119.96931 * 179.78683 * 23 22 21 25 25 C 1.38457 * 120.03266 * 0.48609 * 24 23 22 26 26 F 1.35093 * 119.97203 * 179.72569 * 25 24 23 27 27 C 1.38459 * 120.05551 * 359.74471 * 25 24 23 28 28 C 1.38142 * 120.03129 * 0.02562 * 27 25 24 29 29 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 30 30 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 31 31 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 34 34 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 35 35 H 0.96996 * 119.99844 * 359.97438 * 18 16 15 36 36 H 1.09004 * 109.46923 * 300.00119 * 19 18 16 37 37 H 1.09004 * 109.47042 * 59.99705 * 19 18 16 38 38 H 1.08994 * 109.47158 * 184.99689 * 20 19 18 39 39 H 1.08998 * 109.47055 * 305.00594 * 20 19 18 40 40 H 1.08005 * 120.01626 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.98487 * 180.21431 * 24 23 22 42 42 H 1.08003 * 119.98070 * 179.97438 * 27 25 24 43 43 H 1.07998 * 120.01422 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1613 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4495 15 6 2.2277 -0.9859 3.5896 16 6 1.7627 -0.3295 4.8639 17 8 1.0628 0.6598 4.8160 18 7 2.1256 -0.8412 6.0568 19 6 1.6731 -0.2035 7.2957 20 6 2.2207 -0.9767 8.4969 21 8 3.6460 -0.8760 8.5186 22 6 4.2943 -1.5116 9.5304 23 6 3.5725 -2.2124 10.4853 24 6 4.2329 -2.8615 11.5105 25 6 5.6140 -2.8043 11.5909 26 9 6.2581 -3.4349 12.5971 27 6 6.3353 -2.1011 10.6411 28 6 5.6778 -1.4551 9.6122 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7086 1.1614 -3.4844 33 1 1.8643 -2.0130 3.5567 34 1 3.3172 -0.9848 3.5564 35 1 2.6857 -1.6322 6.0951 36 1 2.0354 0.8241 7.3287 37 1 0.5836 -0.2057 7.3285 38 1 1.8128 -0.5565 9.4161 39 1 1.9317 -2.0246 8.4168 40 1 2.4950 -2.2539 10.4251 41 1 3.6714 -3.4102 12.2522 42 1 7.4126 -2.0569 10.7052 43 1 6.2408 -0.9063 8.8717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330230479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:47 Heat of formation + Delta-G solvation = -181.373784 kcal Electronic energy + Delta-G solvation = -27439.376684 eV Core-core repulsion = 22978.848885 eV Total energy + Delta-G solvation = -4460.527799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.27228 -40.74806 -40.04352 -39.15875 -37.86016 -35.73907 -35.00996 -33.88748 -31.89800 -31.13381 -30.60602 -29.53142 -27.94440 -25.18988 -24.46808 -23.24506 -22.94478 -22.15439 -20.85148 -19.84350 -18.99146 -17.91997 -17.57269 -17.10567 -16.85372 -16.64261 -16.30402 -16.05211 -15.91151 -15.58188 -15.43355 -15.18654 -14.87623 -14.59113 -14.23206 -14.14926 -13.73419 -13.46000 -13.30803 -13.11161 -12.84780 -12.76115 -12.46497 -12.25211 -12.04413 -11.52365 -11.44756 -11.35363 -11.05538 -10.79447 -10.67652 -10.36523 -10.20229 -10.06669 -9.91456 -9.75572 -9.38068 -9.18953 -9.03311 -8.64868 -8.44540 -6.09636 -4.15655 0.59227 0.67240 2.45355 2.53330 2.58057 3.02026 3.23753 3.30808 3.36375 3.41881 3.72681 3.79445 4.03732 4.19013 4.26201 4.40829 4.43387 4.52377 4.63239 4.67433 4.76050 4.91933 5.18076 5.23086 5.24247 5.25922 5.32130 5.36525 5.55808 5.61585 5.65219 5.99163 6.08135 6.14850 6.69786 6.76074 6.89605 6.90014 7.10693 7.22209 7.44985 7.75459 7.94616 8.05969 8.14277 8.77988 8.92739 9.49703 10.97626 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.001594 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.531536 B =17565.518193 C =18414.324380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.906 3.094 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.467 3.533 13 O -0.517 6.517 14 O -0.342 6.342 15 C 0.044 3.956 16 C 0.518 3.482 17 O -0.512 6.512 18 N -0.731 5.731 19 C 0.125 3.875 20 C 0.045 3.955 21 O -0.307 6.307 22 C 0.123 3.877 23 C -0.182 4.182 24 C -0.113 4.113 25 C 0.058 3.942 26 F -0.141 7.141 27 C -0.112 4.112 28 C -0.121 4.121 29 H 0.026 0.974 30 H 0.096 0.904 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.405 0.595 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -5.625 29.889 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.312 3.688 13 O -0.404 6.404 14 O -0.259 6.259 15 C -0.034 4.034 16 C 0.304 3.696 17 O -0.385 6.385 18 N -0.388 5.388 19 C 0.002 3.998 20 C -0.030 4.030 21 O -0.221 6.221 22 C 0.077 3.923 23 C -0.201 4.201 24 C -0.131 4.131 25 C 0.038 3.962 26 F -0.120 7.120 27 C -0.131 4.131 28 C -0.140 4.140 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.239 0.761 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.593 -4.970 29.564 30.329 hybrid contribution 0.627 -1.233 -0.296 1.414 sum 5.219 -6.203 29.269 30.371 Atomic orbital electron populations 1.21744 0.95431 1.00055 1.01983 1.18794 0.95021 0.97088 0.85079 0.91566 1.21124 1.32056 1.13274 0.88713 0.90607 1.24945 0.94918 0.95013 0.99130 1.69888 1.36395 1.22719 1.23882 0.86364 0.79397 0.79191 0.81743 1.20542 1.21134 1.19700 1.25555 0.76436 0.83219 0.83607 1.90500 1.36529 1.26796 1.86613 1.86738 1.69907 1.54794 1.14434 1.22428 1.00419 0.96319 0.84241 1.20309 0.80350 0.84478 0.84503 1.90760 1.35960 1.24787 1.87041 1.45762 1.55082 1.32968 1.04957 1.21380 0.99716 0.97660 0.81061 1.23193 0.78793 1.01503 0.99535 1.86167 1.20804 1.69518 1.45619 1.19015 0.92106 0.93066 0.88091 1.21141 1.00680 1.01949 0.96299 1.20957 0.92566 1.00281 0.99336 1.17610 0.90613 0.99162 0.88781 1.91500 1.81798 1.80358 1.58366 1.21007 1.00989 0.97357 0.93737 1.20348 0.91306 1.02438 0.99913 0.95474 0.88516 0.95020 0.92660 0.88783 0.88689 0.76094 0.89928 0.88863 0.89868 0.90789 0.84365 0.84416 0.83935 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.90 37.16 0.33 -2.93 16 2 C 0.06 1.53 2.74 -92.92 -0.25 1.27 16 3 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 4 C -0.51 -14.41 8.37 -34.44 -0.29 -14.70 16 5 H 0.08 2.20 6.76 -52.49 -0.35 1.84 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 8 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.47 10.99 7.25 36.00 0.26 11.25 16 13 O -0.52 -12.79 15.21 -18.76 -0.29 -13.08 16 14 O -0.34 -7.07 9.66 -45.89 -0.44 -7.51 16 15 C 0.04 0.67 5.94 36.01 0.21 0.88 16 16 C 0.52 7.24 7.91 -10.99 -0.09 7.15 16 17 O -0.51 -9.35 16.50 -14.11 -0.23 -9.58 16 18 N -0.73 -6.69 5.50 -60.29 -0.33 -7.02 16 19 C 0.13 0.90 6.06 -4.04 -0.02 0.88 16 20 C 0.05 0.21 4.87 37.16 0.18 0.39 16 21 O -0.31 -2.16 10.08 -19.56 -0.20 -2.35 16 22 C 0.12 0.83 6.69 -39.23 -0.26 0.57 16 23 C -0.18 -1.01 9.04 -39.44 -0.36 -1.37 16 24 C -0.11 -0.68 10.02 -39.53 -0.40 -1.07 16 25 C 0.06 0.42 7.30 -39.42 -0.29 0.13 16 26 F -0.14 -1.18 17.27 2.25 0.04 -1.14 16 27 C -0.11 -0.71 10.02 -39.54 -0.40 -1.11 16 28 C -0.12 -0.80 9.98 -39.44 -0.39 -1.19 16 29 H 0.03 0.59 8.11 -51.92 -0.42 0.17 16 30 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.10 1.30 8.13 -51.93 -0.42 0.87 16 35 H 0.40 2.74 8.47 -40.82 -0.35 2.39 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.24 7.65 -51.93 -0.40 -0.15 16 39 H 0.07 0.24 7.67 -51.93 -0.40 -0.15 16 40 H 0.14 0.46 6.30 -52.48 -0.33 0.13 16 41 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 43 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -34.31 379.15 -7.49 -41.80 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.50 Total: -0.71 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.85 Total: 1.76 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.30 Total: -31.30 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.16 Total: -32.53 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.31 -7.49 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330230479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.573 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds