Wall clock time and date at job start Tue Mar 31 2020 22:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47020 * 2 1 4 4 C 1.50703 * 109.46825 * 240.00089 * 2 1 3 5 5 H 1.07994 * 120.00353 * 239.99795 * 4 2 1 6 6 C 1.37881 * 119.99805 * 60.00021 * 4 2 1 7 7 N 1.31517 * 120.00056 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46769 * 90.00151 * 8 6 4 10 10 H 1.48493 * 109.47324 * 210.00220 * 8 6 4 11 11 H 1.48499 * 109.47110 * 330.00316 * 8 6 4 12 12 C 1.50696 * 109.46941 * 120.00256 * 2 1 3 13 13 O 1.20833 * 119.99595 * 120.00186 * 12 2 1 14 14 O 1.34224 * 120.00302 * 299.99657 * 12 2 1 15 15 C 1.45206 * 117.00077 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47021 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00041 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.46500 * 120.00169 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47364 * 179.97438 * 19 18 16 21 21 O 1.42907 * 109.46704 * 64.99886 * 20 19 18 22 22 C 1.35942 * 116.99823 * 179.97438 * 21 20 19 23 23 C 1.38706 * 120.03225 * 359.72906 * 22 21 20 24 24 C 1.38148 * 119.96931 * 179.78683 * 23 22 21 25 25 C 1.38457 * 120.03266 * 0.48609 * 24 23 22 26 26 F 1.35093 * 119.97203 * 179.72569 * 25 24 23 27 27 C 1.38459 * 120.05551 * 359.74471 * 25 24 23 28 28 C 1.38142 * 120.03129 * 0.02562 * 27 25 24 29 29 H 1.09008 * 109.46908 * 299.99556 * 1 2 3 30 30 H 1.09003 * 109.47422 * 59.99947 * 1 2 3 31 31 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99960 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47070 * 300.00162 * 15 14 12 34 34 H 1.09001 * 109.46626 * 60.00180 * 15 14 12 35 35 H 0.96996 * 119.99844 * 359.97438 * 18 16 15 36 36 H 1.09004 * 109.46923 * 300.00119 * 19 18 16 37 37 H 1.09004 * 109.47042 * 59.99705 * 19 18 16 38 38 H 1.08994 * 109.47158 * 184.99689 * 20 19 18 39 39 H 1.08998 * 109.47055 * 305.00594 * 20 19 18 40 40 H 1.08005 * 120.01626 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.98487 * 180.21431 * 24 23 22 42 42 H 1.08003 * 119.98070 * 179.97438 * 27 25 24 43 43 H 1.07998 * 120.01422 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.3445 -2.1613 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1194 14 8 1.7081 -0.2519 2.4495 15 6 2.2277 -0.9859 3.5896 16 6 1.7627 -0.3295 4.8639 17 8 1.0628 0.6598 4.8160 18 7 2.1256 -0.8412 6.0568 19 6 1.6731 -0.2035 7.2957 20 6 2.2207 -0.9767 8.4969 21 8 3.6460 -0.8760 8.5186 22 6 4.2943 -1.5116 9.5304 23 6 3.5725 -2.2124 10.4853 24 6 4.2329 -2.8615 11.5105 25 6 5.6140 -2.8043 11.5909 26 9 6.2581 -3.4349 12.5971 27 6 6.3353 -2.1011 10.6411 28 6 5.6778 -1.4551 9.6122 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7086 1.1614 -3.4844 33 1 1.8643 -2.0130 3.5567 34 1 3.3172 -0.9848 3.5564 35 1 2.6857 -1.6322 6.0951 36 1 2.0354 0.8241 7.3287 37 1 0.5836 -0.2057 7.3285 38 1 1.8128 -0.5565 9.4161 39 1 1.9317 -2.0246 8.4168 40 1 2.4950 -2.2539 10.4251 41 1 3.6714 -3.4102 12.2522 42 1 7.4126 -2.0569 10.7052 43 1 6.2408 -0.9063 8.8717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330230479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:46 Heat of formation + Delta-G solvation = -202.328905 kcal Electronic energy + Delta-G solvation = -27440.285367 eV Core-core repulsion = 22978.848885 eV Total energy + Delta-G solvation = -4461.436481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.83068 -41.61943 -41.17861 -40.44673 -38.38112 -37.40337 -35.94264 -35.91107 -32.76298 -32.35234 -31.72814 -30.18545 -28.93864 -27.27618 -25.25370 -24.64532 -23.62064 -22.70386 -21.92181 -21.60876 -19.42652 -18.76699 -18.61569 -18.39322 -18.05506 -17.67734 -17.50532 -17.47389 -17.00601 -16.60505 -16.34998 -16.22075 -15.82980 -15.69283 -15.22662 -14.80771 -14.71037 -14.55212 -14.50959 -14.09786 -13.82095 -13.64861 -13.55846 -13.39992 -13.24300 -12.97198 -12.76663 -12.72750 -12.59787 -12.30672 -12.04540 -11.88487 -11.78915 -11.77463 -11.23284 -11.10345 -10.96913 -10.52929 -10.25404 -10.18714 -9.12650 -8.18717 -6.32829 0.16185 0.19263 1.34333 1.36199 1.42759 1.45143 1.45748 1.57710 2.06912 2.35615 2.51401 2.56773 3.11332 3.33198 3.56971 3.63066 3.78517 3.85542 4.03398 4.05745 4.08831 4.12896 4.25279 4.29502 4.36426 4.45627 4.68395 4.71901 4.78729 4.89799 4.90918 4.98752 5.12591 5.16121 5.20962 5.24874 5.32105 5.42362 5.68300 5.68857 5.87561 6.08841 6.33079 6.33619 6.73863 6.97540 7.06972 7.36093 8.87905 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.001594 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.531536 B =17565.518193 C =18414.324380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.967 3.033 9 H -0.272 1.272 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.477 3.523 13 O -0.534 6.534 14 O -0.351 6.351 15 C 0.034 3.966 16 C 0.523 3.477 17 O -0.562 6.562 18 N -0.708 5.708 19 C 0.121 3.879 20 C 0.048 3.952 21 O -0.324 6.324 22 C 0.115 3.885 23 C -0.179 4.179 24 C -0.114 4.114 25 C 0.035 3.965 26 F -0.153 7.153 27 C -0.116 4.116 28 C -0.134 4.134 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.268 0.732 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.419 0.581 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.165 0.835 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.652 -6.769 30.956 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.792 3.208 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.198 1.198 12 C 0.322 3.678 13 O -0.423 6.423 14 O -0.267 6.267 15 C -0.043 4.043 16 C 0.309 3.691 17 O -0.440 6.440 18 N -0.363 5.363 19 C -0.002 4.002 20 C -0.027 4.027 21 O -0.238 6.238 22 C 0.070 3.930 23 C -0.197 4.197 24 C -0.133 4.133 25 C 0.016 3.984 26 F -0.131 7.131 27 C -0.134 4.134 28 C -0.152 4.152 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.256 0.744 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.182 0.818 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.367 -6.139 30.689 31.600 hybrid contribution 0.716 -0.861 -0.492 1.223 sum 5.083 -7.000 30.197 31.411 Atomic orbital electron populations 1.21563 0.94484 1.00027 1.01783 1.18707 0.95903 0.96234 0.86205 0.93346 1.21254 1.32706 1.13357 0.90195 0.92045 1.25696 0.94893 0.95642 1.01739 1.69982 1.36667 1.23451 1.24766 0.85411 0.78757 0.78330 0.78292 1.19717 1.20132 1.19821 1.24850 0.76063 0.82626 0.84225 1.90478 1.37207 1.27392 1.87178 1.86644 1.69868 1.55405 1.14822 1.22876 1.01566 0.97013 0.82805 1.20103 0.79922 0.83823 0.85274 1.90747 1.38542 1.26964 1.87702 1.45631 1.53763 1.32734 1.04201 1.21564 1.00425 0.97329 0.80837 1.23298 0.77811 1.02526 0.99067 1.86134 1.21956 1.69791 1.45898 1.19151 0.92239 0.93296 0.88364 1.21395 1.01908 1.00983 0.95428 1.21211 0.92184 1.00121 0.99785 1.17902 0.91433 1.00031 0.89061 1.91468 1.82107 1.80690 1.58879 1.21159 1.01712 0.97062 0.93501 1.20499 0.91763 1.02793 1.00193 0.93889 0.90346 0.94840 0.92276 0.86598 0.86973 0.74386 0.91291 0.87978 0.87428 0.88616 0.81801 0.82768 0.82852 0.83476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.90 71.98 0.64 -5.26 16 2 C 0.05 2.55 2.74 -12.29 -0.03 2.51 16 3 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 4 C -0.54 -30.49 8.37 25.60 0.21 -30.28 16 5 H 0.06 3.60 6.76 -2.91 -0.02 3.58 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -51.10 11.32 21.45 0.24 -50.86 16 8 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.48 22.50 7.25 71.23 0.52 23.02 16 13 O -0.53 -26.27 15.21 21.94 0.33 -25.93 16 14 O -0.35 -14.40 9.66 -45.00 -0.43 -14.83 16 15 C 0.03 1.00 5.94 71.24 0.42 1.42 16 16 C 0.52 13.96 7.91 87.66 0.69 14.66 16 17 O -0.56 -20.35 16.50 15.76 0.26 -20.09 16 18 N -0.71 -11.41 5.50 -463.05 -2.55 -13.95 16 19 C 0.12 1.48 6.06 86.38 0.52 2.01 16 20 C 0.05 0.29 4.87 71.98 0.35 0.64 16 21 O -0.32 -3.77 10.08 -92.89 -0.94 -4.71 16 22 C 0.12 1.33 6.69 22.49 0.15 1.48 16 23 C -0.18 -1.50 9.04 22.36 0.20 -1.30 16 24 C -0.11 -1.16 10.02 22.30 0.22 -0.94 16 25 C 0.03 0.48 7.30 22.37 0.16 0.64 16 26 F -0.15 -2.49 17.27 44.97 0.78 -1.72 16 27 C -0.12 -1.39 10.02 22.30 0.22 -1.17 16 28 C -0.13 -1.62 9.98 22.36 0.22 -1.40 16 29 H 0.04 1.90 8.11 -2.38 -0.02 1.88 16 30 H 0.08 4.12 6.07 -2.39 -0.01 4.10 16 31 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.12 2.86 8.13 -2.39 -0.02 2.84 16 34 H 0.11 2.87 8.13 -2.39 -0.02 2.85 16 35 H 0.42 4.48 8.47 -92.71 -0.79 3.69 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.11 0.21 7.65 -2.39 -0.02 0.19 16 39 H 0.10 0.22 7.67 -2.39 -0.02 0.20 16 40 H 0.16 0.43 6.30 -2.91 -0.02 0.41 16 41 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 42 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -74.48 379.15 4.95 -69.53 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.27 Total: 9.24 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 4.96 Total: 7.59 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -2.31 Total: -64.81 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -0.78 Total: -65.56 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -74.48 4.95 -69.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330230479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.798 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds