Wall clock time and date at job start Tue Mar 31 2020 22:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47137 * 2 1 4 4 O 1.41607 * 119.99931 * 255.00072 * 3 2 1 5 5 C 1.42896 * 114.00034 * 269.99835 * 4 3 2 6 6 C 1.34775 * 120.00069 * 75.00103 * 3 2 1 7 7 O 1.21280 * 119.99844 * 0.02562 * 6 3 2 8 8 C 1.50697 * 120.00138 * 180.02562 * 6 3 2 9 9 N 1.46501 * 109.47349 * 180.02562 * 8 6 3 10 10 C 1.34769 * 120.00323 * 180.02562 * 9 8 6 11 11 O 1.21365 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.49310 * 120.00069 * 179.97438 * 10 9 8 13 13 O 1.21401 * 120.00204 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99824 * 179.97438 * 12 10 9 15 15 C 1.40291 * 119.99920 * 179.97438 * 14 12 10 16 16 C 1.40728 * 126.10038 * 359.96768 * 15 14 12 17 17 N 1.30879 * 108.37511 * 179.78865 * 16 15 14 18 18 N 1.40063 * 108.43330 * 0.38015 * 17 16 15 19 19 C 1.37301 * 126.05067 * 179.87892 * 18 17 16 20 20 H 1.08002 * 119.99622 * 179.68466 * 19 18 17 21 21 C 1.39003 * 119.99972 * 359.96617 * 19 18 17 22 22 N 1.31284 * 120.00043 * 359.72316 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 179.72361 * 21 19 18 24 24 H 1.48504 * 109.46920 * 59.99981 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99751 * 23 21 19 27 27 C 1.35786 * 126.10045 * 180.02562 * 15 14 12 28 28 H 1.08997 * 109.46911 * 59.99788 * 1 2 3 29 29 H 1.09003 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46988 * 299.99798 * 1 2 3 31 31 H 1.09008 * 109.47315 * 240.00002 * 2 1 3 32 32 H 1.08997 * 109.47628 * 120.00009 * 2 1 3 33 33 H 1.09007 * 109.47280 * 60.00008 * 5 4 3 34 34 H 1.08998 * 109.47357 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47545 * 300.00260 * 5 4 3 36 36 H 1.08996 * 109.47125 * 59.99705 * 8 6 3 37 37 H 1.09009 * 109.46831 * 299.99924 * 8 6 3 38 38 H 0.97005 * 119.99816 * 0.02562 * 9 8 6 39 39 H 0.97005 * 120.00106 * 0.02562 * 14 12 10 40 40 H 1.07994 * 125.80747 * 359.97438 * 16 15 14 41 41 H 0.97004 * 119.99619 * 180.02562 * 22 21 19 42 42 H 1.08006 * 126.25013 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 8 2.5536 1.9430 -1.1846 5 6 3.9621 1.7532 -1.3329 6 6 1.9581 2.1173 1.1274 7 8 1.5002 1.6360 2.1421 8 6 2.4599 3.5382 1.1273 9 7 2.2864 4.1176 2.4616 10 6 2.6672 5.3884 2.6993 11 8 3.1543 6.0527 1.8080 12 6 2.4897 5.9790 4.0591 13 8 2.0029 5.3143 4.9508 14 7 2.8710 7.2496 4.2969 15 6 2.7038 7.8047 5.5744 16 6 2.1547 7.1550 6.6954 17 7 2.1681 7.9894 7.7036 18 7 2.7154 9.2026 7.2671 19 6 2.8964 10.3288 8.0314 20 1 3.3346 11.2136 7.5938 21 6 2.5211 10.3282 9.3698 22 7 1.9885 9.2526 9.9017 23 14 2.7744 11.8579 10.4115 24 1 2.0104 12.9883 9.8251 25 1 2.2948 11.6008 11.7932 26 1 4.2189 12.2009 10.4442 27 6 3.0419 9.0652 5.9495 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.1848 0.6864 -1.3537 34 1 4.2945 2.2124 -2.2639 35 1 4.4815 2.2165 -0.4941 36 1 1.8956 4.1228 0.4008 37 1 3.5169 3.5503 0.8610 38 1 1.8974 3.5865 3.1741 39 1 3.2604 7.7806 3.5845 40 1 1.7879 6.1396 6.7204 41 1 1.7262 9.2524 10.8356 42 1 3.4872 9.8212 5.3197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332179561.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:41 Heat of formation + Delta-G solvation = -25.851262 kcal Electronic energy + Delta-G solvation = -28342.278551 eV Core-core repulsion = 23940.707427 eV Total energy + Delta-G solvation = -4401.571124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11027 -41.48338 -40.87997 -39.42065 -38.55421 -36.49569 -35.69982 -35.03066 -34.82644 -32.29782 -31.67577 -30.01654 -29.26212 -27.47444 -27.04740 -25.42566 -24.01748 -22.89528 -21.79097 -21.47272 -21.24458 -20.15931 -19.27498 -18.41560 -18.25748 -17.60078 -17.43483 -17.36402 -16.90925 -16.76437 -16.40117 -15.98952 -15.78744 -15.42390 -15.38005 -15.31926 -14.96091 -14.84283 -14.82265 -14.56962 -14.02107 -13.55777 -13.50472 -13.38101 -13.17823 -12.97354 -12.87998 -12.77807 -12.55927 -12.12898 -12.10896 -11.97165 -11.74629 -11.10892 -11.05371 -10.86980 -10.66195 -10.55240 -10.25434 -10.13810 -8.62421 -8.48096 -6.26224 0.22435 0.66077 1.12058 1.23704 1.30924 1.41949 1.57831 1.72648 2.00967 2.12051 2.48026 2.51784 2.70563 2.90425 3.08446 3.48561 3.85980 4.05506 4.07550 4.19179 4.24709 4.39977 4.40174 4.40465 4.47218 4.52931 4.75179 4.79064 4.90081 4.92662 4.96043 4.98962 5.21395 5.23805 5.30244 5.30572 5.84419 5.93769 6.14896 6.22758 6.42277 6.64378 6.70941 6.72855 7.05489 7.41978 7.63052 8.50869 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034170 B = 0.001823 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.233216 B =15355.108199 C =16003.654986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.113 3.887 3 N -0.473 5.473 4 O -0.148 6.148 5 C -0.017 4.017 6 C 0.519 3.481 7 O -0.542 6.542 8 C 0.104 3.896 9 N -0.688 5.688 10 C 0.533 3.467 11 O -0.529 6.529 12 C 0.486 3.514 13 O -0.543 6.543 14 N -0.578 5.578 15 C -0.057 4.057 16 C -0.050 4.050 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.353 4.353 20 H 0.143 0.857 21 C -0.006 4.006 22 N -0.822 5.822 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.278 1.278 26 H -0.253 1.253 27 C -0.072 4.072 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.135 0.865 35 H 0.055 0.945 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.421 0.579 39 H 0.425 0.575 40 H 0.173 0.827 41 H 0.278 0.722 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -14.115 -24.253 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.006 4.006 3 N -0.251 5.251 4 O -0.151 6.151 5 C -0.114 4.114 6 C 0.309 3.691 7 O -0.420 6.420 8 C -0.022 4.022 9 N -0.344 5.344 10 C 0.314 3.686 11 O -0.406 6.406 12 C 0.268 3.732 13 O -0.421 6.421 14 N -0.223 5.223 15 C -0.164 4.164 16 C -0.225 4.225 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.484 4.484 20 H 0.160 0.840 21 C -0.218 4.218 22 N -0.449 5.449 23 Si 0.839 3.161 24 H -0.177 1.177 25 H -0.203 1.203 26 H -0.177 1.177 27 C -0.223 4.223 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.261 0.739 39 H 0.263 0.737 40 H 0.190 0.810 41 H 0.087 0.913 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.092 -14.243 -22.477 26.789 hybrid contribution 0.377 0.131 -0.259 0.476 sum 3.469 -14.113 -22.737 26.984 Atomic orbital electron populations 1.22105 0.94746 1.03691 1.01924 1.21937 0.95381 0.78554 1.04761 1.50137 1.58248 1.13583 1.03177 1.90682 1.24845 1.75046 1.24568 1.23720 0.80069 1.03219 1.04425 1.20633 0.78369 0.88268 0.81875 1.90803 1.47112 1.72773 1.31282 1.21299 1.04911 0.90954 0.85021 1.45432 1.62149 1.12694 1.14094 1.19508 0.79013 0.82507 0.87605 1.90745 1.43666 1.60678 1.45516 1.20136 0.81236 0.82743 0.89116 1.90678 1.44419 1.60819 1.46206 1.42021 1.57974 1.12085 1.10257 1.17283 1.17893 0.94572 0.86615 1.24244 1.06501 1.00921 0.90824 1.78169 1.22567 0.91474 1.21793 1.44853 1.33598 1.08776 1.05867 1.20636 1.44057 0.90349 0.93383 0.83959 1.26909 0.94163 1.02225 0.98535 1.70380 1.30962 1.29469 1.14102 0.84635 0.79925 0.75477 0.76067 1.17710 1.20293 1.17699 1.22013 1.14027 0.98374 0.87910 0.91904 0.89049 0.94034 0.86450 0.89872 0.91425 0.84773 0.92669 0.86035 0.86098 0.73943 0.73666 0.80972 0.91253 0.79239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.04 71.98 0.72 -1.28 16 2 C 0.11 1.22 6.38 86.38 0.55 1.77 16 3 N -0.47 -6.78 3.02 -463.06 -1.40 -8.18 16 4 O -0.15 -1.67 10.84 -38.80 -0.42 -2.09 16 5 C -0.02 -0.09 11.44 113.37 1.30 1.21 16 6 C 0.52 10.11 7.63 87.66 0.67 10.78 16 7 O -0.54 -14.12 14.74 -3.03 -0.04 -14.16 16 8 C 0.10 1.91 5.46 85.63 0.47 2.38 16 9 N -0.69 -17.28 5.52 -468.29 -2.59 -19.87 16 10 C 0.53 15.64 7.88 87.23 0.69 16.33 16 11 O -0.53 -15.67 16.47 -3.29 -0.05 -15.73 16 12 C 0.49 17.73 7.85 87.23 0.69 18.41 16 13 O -0.54 -23.16 13.62 -3.41 -0.05 -23.21 16 14 N -0.58 -21.35 5.45 -305.33 -1.66 -23.01 16 15 C -0.06 -2.66 6.90 37.83 0.26 -2.40 16 16 C -0.05 -2.68 10.85 85.44 0.93 -1.76 16 17 N -0.31 -18.51 10.39 -56.43 -0.59 -19.10 16 18 N -0.16 -9.01 3.73 -189.97 -0.71 -9.72 16 19 C -0.35 -18.55 10.25 84.02 0.86 -17.69 16 20 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 21 C -0.01 -0.32 5.50 84.96 0.47 0.15 16 22 N -0.82 -47.15 11.81 21.66 0.26 -46.90 16 23 Si 1.02 38.25 29.55 68.60 2.03 40.28 16 24 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 25 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 26 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 27 C -0.07 -3.35 11.50 83.41 0.96 -2.40 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.74 7.34 -2.39 -0.02 0.72 16 31 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 0.99 7.90 -2.39 -0.02 0.97 16 33 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.05 0.33 7.13 -2.39 -0.02 0.31 16 36 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.12 1.77 7.13 -2.38 -0.02 1.76 16 38 H 0.42 11.65 6.91 -92.70 -0.64 11.01 16 39 H 0.43 12.85 8.29 -92.70 -0.77 12.09 16 40 H 0.17 9.27 5.92 -2.91 -0.02 9.25 16 41 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -77.46 371.81 3.02 -74.44 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -0.31 Total: 41.73 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 8.55 Total: 25.51 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.69 Total: -126.77 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.57 Total: -55.18 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -77.46 3.02 -74.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332179561.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.586 kcal (2) G-P(sol) polarization free energy of solvation -77.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds