Wall clock time and date at job start Tue Mar 31 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46700 * 2 1 4 4 C 1.46499 * 119.99919 * 272.14239 * 3 2 1 5 5 C 1.53007 * 109.47156 * 270.00376 * 4 3 2 6 6 O 1.42900 * 109.46842 * 300.00381 * 5 4 3 7 7 C 1.42902 * 113.99642 * 203.11479 * 6 5 4 8 8 O 1.42898 * 109.47143 * 60.00169 * 5 4 3 9 9 C 1.42893 * 113.99826 * 166.54902 * 8 5 4 10 10 C 1.34779 * 119.99651 * 92.14855 * 3 2 1 11 11 O 1.21615 * 119.99756 * 175.68130 * 10 3 2 12 12 C 1.47429 * 120.00375 * 355.68290 * 10 3 2 13 13 C 1.39681 * 120.21149 * 58.14870 * 12 10 3 14 14 C 1.37807 * 119.93480 * 180.02562 * 13 12 10 15 15 C 1.38661 * 120.38132 * 0.02562 * 14 13 12 16 16 C 1.37904 * 120.44053 * 0.02562 * 15 14 13 17 17 C 1.39112 * 120.05013 * 359.97438 * 16 15 14 18 18 S 1.76202 * 120.18953 * 180.02562 * 17 16 15 19 19 C 1.76197 * 100.00177 * 352.59245 * 18 17 16 20 20 H 1.07998 * 119.99507 * 2.94786 * 19 18 17 21 21 C 1.38802 * 120.00147 * 182.95034 * 19 18 17 22 22 N 1.31553 * 119.99843 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99862 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47526 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46653 * 120.00226 * 23 21 19 26 26 H 1.48498 * 109.47431 * 239.99791 * 23 21 19 27 27 H 1.09004 * 109.46665 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46899 * 299.99496 * 1 2 3 29 29 H 1.09000 * 109.46986 * 59.99965 * 1 2 3 30 30 H 1.09000 * 109.46899 * 240.00504 * 2 1 3 31 31 H 1.09000 * 109.46986 * 120.00035 * 2 1 3 32 32 H 1.08993 * 109.47277 * 30.00337 * 4 3 2 33 33 H 1.09002 * 109.47006 * 150.00625 * 4 3 2 34 34 H 1.08996 * 109.46740 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47296 * 65.46750 * 7 6 5 36 36 H 1.09004 * 109.47260 * 185.46424 * 7 6 5 37 37 H 1.09003 * 109.47254 * 305.46220 * 7 6 5 38 38 H 1.09000 * 109.47100 * 314.09201 * 9 8 5 39 39 H 1.09001 * 109.47423 * 74.10118 * 9 8 5 40 40 H 1.09004 * 109.46962 * 194.09739 * 9 8 5 41 41 H 1.07999 * 120.03543 * 0.28187 * 13 12 10 42 42 H 1.08000 * 119.80778 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.77892 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.97846 * 180.02562 * 16 15 14 45 45 H 0.96996 * 119.99778 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2177 2.0877 -1.2678 5 6 3.6462 1.8531 -1.7632 6 8 4.5734 2.3444 -0.7931 7 6 5.8602 2.6618 -1.3276 8 8 3.8587 0.4537 -1.9592 9 6 5.0403 0.1434 -2.7004 10 6 2.2841 2.0020 1.1664 11 8 2.7634 3.1198 1.1650 12 6 1.9940 1.3260 2.4441 13 6 2.5807 0.0924 2.7356 14 6 2.3051 -0.5347 3.9314 15 6 1.4470 0.0516 4.8493 16 6 0.8585 1.2687 4.5771 17 6 1.1239 1.9177 3.3756 18 16 0.3744 3.4732 3.0243 19 6 -0.7346 3.5935 4.3882 20 1 -0.7407 2.8265 5.1484 21 6 -1.6005 4.6740 4.4854 22 7 -1.5934 5.6079 3.5590 23 14 -2.7768 4.8010 5.9309 24 1 -2.5886 3.6317 6.8266 25 1 -2.5014 6.0507 6.6846 26 1 -4.1749 4.8224 5.4311 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5105 1.7129 -2.0077 33 1 2.0557 3.1552 -1.1184 34 1 3.7947 2.3791 -2.7063 35 1 5.7695 3.4979 -2.0209 36 1 6.5338 2.9348 -0.5153 37 1 6.2588 1.7946 -1.8542 38 1 5.1012 0.7913 -3.5749 39 1 5.9160 0.2999 -2.0705 40 1 5.0049 -0.8977 -3.0214 41 1 3.2528 -0.3677 2.0264 42 1 2.7595 -1.4887 4.1546 43 1 1.2382 -0.4482 5.7837 44 1 0.1916 1.7189 5.2976 45 1 -2.1982 6.3632 3.6271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350408361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:20 Heat of formation + Delta-G solvation = -82.822814 kcal Electronic energy + Delta-G solvation = -28365.389210 eV Core-core repulsion = 24475.348078 eV Total energy + Delta-G solvation = -3890.041132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95449 -38.92699 -37.37432 -35.95198 -35.39453 -32.73708 -31.57058 -30.37387 -30.25001 -28.86418 -26.75508 -26.07093 -25.83443 -23.67374 -23.07209 -21.87139 -21.73110 -19.26255 -17.86797 -17.44185 -17.34078 -16.61057 -16.08957 -16.02043 -15.60075 -15.09507 -14.70119 -14.45409 -14.36865 -14.01253 -13.63307 -13.55472 -13.47929 -13.21365 -12.90975 -12.89347 -12.47503 -12.44240 -12.16100 -11.97812 -11.69599 -11.60096 -11.44869 -11.27514 -11.20092 -11.07975 -10.95548 -10.67517 -10.28466 -10.04273 -9.80688 -9.73901 -9.51516 -9.21175 -8.67961 -8.45951 -8.29844 -8.09190 -6.51662 -6.45612 -4.15893 1.78781 2.06223 3.11389 3.12715 3.21460 3.24440 3.42006 3.48337 3.64690 3.80149 4.05420 4.41635 4.65527 4.89638 4.95590 4.96447 5.06977 5.14849 5.15962 5.20092 5.24608 5.34437 5.46853 5.48732 5.50986 5.63311 5.65714 5.67953 5.78332 5.83468 5.98294 6.06907 6.17387 6.21339 6.44101 6.57328 6.65240 6.82541 6.95949 6.97131 7.08726 7.16116 7.19378 7.47961 7.63871 7.91339 8.18598 8.87587 9.01454 10.60296 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003680 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.821471 B = 7606.377185 C = 8307.633071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.601 5.601 4 C 0.137 3.863 5 C 0.225 3.775 6 O -0.364 6.364 7 C 0.014 3.986 8 O -0.387 6.387 9 C 0.022 3.978 10 C 0.576 3.424 11 O -0.506 6.506 12 C -0.148 4.148 13 C -0.071 4.071 14 C -0.176 4.176 15 C -0.085 4.085 16 C -0.150 4.150 17 C -0.049 4.049 18 S 0.091 5.909 19 C -0.564 4.564 20 H 0.094 0.906 21 C 0.080 3.920 22 N -0.861 5.861 23 Si 0.923 3.077 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.435 -12.209 -11.697 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.335 5.335 4 C 0.013 3.987 5 C 0.128 3.872 6 O -0.283 6.283 7 C -0.082 4.082 8 O -0.307 6.307 9 C -0.074 4.074 10 C 0.364 3.636 11 O -0.380 6.380 12 C -0.161 4.161 13 C -0.091 4.091 14 C -0.200 4.200 15 C -0.106 4.106 16 C -0.176 4.176 17 C -0.167 4.167 18 S 0.351 5.649 19 C -0.711 4.711 20 H 0.112 0.888 21 C -0.131 4.131 22 N -0.494 5.494 23 Si 0.748 3.252 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.203 1.203 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.427 -10.402 -12.438 18.755 hybrid contribution -0.482 -0.720 1.403 1.649 sum 8.946 -11.122 -11.035 18.041 Atomic orbital electron populations 1.22201 0.96280 1.01646 1.02811 1.21759 0.94050 0.82509 1.03690 1.47563 1.66956 1.14289 1.04655 1.21411 0.90876 0.99882 0.86522 1.24065 0.91956 0.80223 0.90960 1.88313 1.21793 1.82856 1.35369 1.23109 0.86076 0.98901 1.00106 1.88059 1.42711 1.25488 1.74484 1.22985 0.88383 1.01444 0.94577 1.18175 0.76880 0.85258 0.83265 1.90787 1.41476 1.18843 1.86877 1.19188 1.04742 0.96881 0.95297 1.20849 0.98296 0.93160 0.96782 1.20663 1.03078 1.00878 0.95393 1.21041 0.96103 0.95158 0.98301 1.21399 1.02717 0.96118 0.97339 1.22805 0.97582 1.01195 0.95139 1.83981 1.38637 1.10303 1.32013 1.23568 1.23627 1.12444 1.11479 0.88827 1.25093 0.96583 0.94316 0.97094 1.69985 1.36404 1.10242 1.32784 0.86039 0.79681 0.78628 0.80839 1.19134 1.20267 1.20276 0.92144 0.91638 0.92877 0.90323 0.89416 0.88803 0.87717 0.92522 0.94188 0.89598 0.93642 0.94224 0.93343 0.89854 0.86587 0.87045 0.87065 0.84455 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.41 5.68 -4.04 -0.02 1.39 16 3 N -0.60 -9.89 2.35 -174.94 -0.41 -10.30 16 4 C 0.14 1.92 5.62 -4.04 -0.02 1.90 16 5 C 0.22 2.86 3.17 37.16 0.12 2.98 16 6 O -0.36 -5.63 9.01 -64.44 -0.58 -6.21 16 7 C 0.01 0.16 10.66 101.05 1.08 1.24 16 8 O -0.39 -4.62 9.19 -59.04 -0.54 -5.16 16 9 C 0.02 0.19 9.85 101.05 1.00 1.18 16 10 C 0.58 11.90 5.98 -12.52 -0.07 11.83 16 11 O -0.51 -12.17 14.91 -7.90 -0.12 -12.29 16 12 C -0.15 -3.05 5.03 -104.75 -0.53 -3.58 16 13 C -0.07 -1.23 7.61 -39.20 -0.30 -1.52 16 14 C -0.18 -2.84 10.02 -39.58 -0.40 -3.23 16 15 C -0.09 -1.49 10.02 -39.55 -0.40 -1.88 16 16 C -0.15 -3.19 9.24 -39.38 -0.36 -3.55 16 17 C -0.05 -1.14 6.14 -38.39 -0.24 -1.38 16 18 S 0.09 2.45 20.08 -107.50 -2.16 0.29 16 19 C -0.56 -15.58 9.07 30.94 0.28 -15.29 16 20 H 0.09 2.46 4.85 -52.49 -0.25 2.20 16 21 C 0.08 2.18 5.49 -17.46 -0.10 2.09 16 22 N -0.86 -24.81 13.22 55.49 0.73 -24.07 16 23 Si 0.92 20.74 29.55 -169.99 -5.02 15.71 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.95 7.02 -51.93 -0.36 0.58 16 31 H 0.09 1.24 4.15 -51.93 -0.22 1.02 16 32 H 0.09 1.03 8.07 -51.93 -0.42 0.62 16 33 H 0.10 1.64 7.48 -51.93 -0.39 1.25 16 34 H 0.06 0.58 7.63 -51.93 -0.40 0.19 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.41 4.50 -51.93 -0.23 0.18 16 38 H 0.04 0.27 7.85 -51.93 -0.41 -0.13 16 39 H 0.05 0.42 5.86 -51.93 -0.30 0.11 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.12 1.77 7.16 -52.49 -0.38 1.39 16 42 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.14 3.03 4.98 -52.48 -0.26 2.77 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -33.74 376.30 -8.15 -41.89 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.14 Total: 4.26 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 0.42 Total: -9.78 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.32 Total: -34.38 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -1.24 Total: -23.67 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.16 Total: 0.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.74 -8.15 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350408361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.934 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds