Wall clock time and date at job start Tue Mar 31 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.46700 * 2 1 4 4 C 1.46499 * 119.99919 * 272.14239 * 3 2 1 5 5 C 1.53007 * 109.47156 * 270.00376 * 4 3 2 6 6 O 1.42900 * 109.46842 * 300.00381 * 5 4 3 7 7 C 1.42902 * 113.99642 * 203.11479 * 6 5 4 8 8 O 1.42898 * 109.47143 * 60.00169 * 5 4 3 9 9 C 1.42893 * 113.99826 * 166.54902 * 8 5 4 10 10 C 1.34779 * 119.99651 * 92.14855 * 3 2 1 11 11 O 1.21615 * 119.99756 * 175.68130 * 10 3 2 12 12 C 1.47429 * 120.00375 * 355.68290 * 10 3 2 13 13 C 1.39681 * 120.21149 * 58.14870 * 12 10 3 14 14 C 1.37807 * 119.93480 * 180.02562 * 13 12 10 15 15 C 1.38661 * 120.38132 * 0.02562 * 14 13 12 16 16 C 1.37904 * 120.44053 * 0.02562 * 15 14 13 17 17 C 1.39112 * 120.05013 * 359.97438 * 16 15 14 18 18 S 1.76202 * 120.18953 * 180.02562 * 17 16 15 19 19 C 1.76197 * 100.00177 * 352.59245 * 18 17 16 20 20 H 1.07998 * 119.99507 * 2.94786 * 19 18 17 21 21 C 1.38802 * 120.00147 * 182.95034 * 19 18 17 22 22 N 1.31553 * 119.99843 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99862 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47526 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46653 * 120.00226 * 23 21 19 26 26 H 1.48498 * 109.47431 * 239.99791 * 23 21 19 27 27 H 1.09004 * 109.46665 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46899 * 299.99496 * 1 2 3 29 29 H 1.09000 * 109.46986 * 59.99965 * 1 2 3 30 30 H 1.09000 * 109.46899 * 240.00504 * 2 1 3 31 31 H 1.09000 * 109.46986 * 120.00035 * 2 1 3 32 32 H 1.08993 * 109.47277 * 30.00337 * 4 3 2 33 33 H 1.09002 * 109.47006 * 150.00625 * 4 3 2 34 34 H 1.08996 * 109.46740 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47296 * 65.46750 * 7 6 5 36 36 H 1.09004 * 109.47260 * 185.46424 * 7 6 5 37 37 H 1.09003 * 109.47254 * 305.46220 * 7 6 5 38 38 H 1.09000 * 109.47100 * 314.09201 * 9 8 5 39 39 H 1.09001 * 109.47423 * 74.10118 * 9 8 5 40 40 H 1.09004 * 109.46962 * 194.09739 * 9 8 5 41 41 H 1.07999 * 120.03543 * 0.28187 * 13 12 10 42 42 H 1.08000 * 119.80778 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.77892 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.97846 * 180.02562 * 16 15 14 45 45 H 0.96996 * 119.99778 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2177 2.0877 -1.2678 5 6 3.6462 1.8531 -1.7632 6 8 4.5734 2.3444 -0.7931 7 6 5.8602 2.6618 -1.3276 8 8 3.8587 0.4537 -1.9592 9 6 5.0403 0.1434 -2.7004 10 6 2.2841 2.0020 1.1664 11 8 2.7634 3.1198 1.1650 12 6 1.9940 1.3260 2.4441 13 6 2.5807 0.0924 2.7356 14 6 2.3051 -0.5347 3.9314 15 6 1.4470 0.0516 4.8493 16 6 0.8585 1.2687 4.5771 17 6 1.1239 1.9177 3.3756 18 16 0.3744 3.4732 3.0243 19 6 -0.7346 3.5935 4.3882 20 1 -0.7407 2.8265 5.1484 21 6 -1.6005 4.6740 4.4854 22 7 -1.5934 5.6079 3.5590 23 14 -2.7768 4.8010 5.9309 24 1 -2.5886 3.6317 6.8266 25 1 -2.5014 6.0507 6.6846 26 1 -4.1749 4.8224 5.4311 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5105 1.7129 -2.0077 33 1 2.0557 3.1552 -1.1184 34 1 3.7947 2.3791 -2.7063 35 1 5.7695 3.4979 -2.0209 36 1 6.5338 2.9348 -0.5153 37 1 6.2588 1.7946 -1.8542 38 1 5.1012 0.7913 -3.5749 39 1 5.9160 0.2999 -2.0705 40 1 5.0049 -0.8977 -3.0214 41 1 3.2528 -0.3677 2.0264 42 1 2.7595 -1.4887 4.1546 43 1 1.2382 -0.4482 5.7837 44 1 0.1916 1.7189 5.2976 45 1 -2.1982 6.3632 3.6271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350408361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:20 Heat of formation + Delta-G solvation = -104.242202 kcal Electronic energy + Delta-G solvation = -28366.318025 eV Core-core repulsion = 24475.348078 eV Total energy + Delta-G solvation = -3890.969947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29802 -40.04036 -38.86199 -36.92495 -36.74156 -34.77796 -32.79991 -31.88225 -31.67786 -29.96126 -27.88144 -27.71798 -26.84974 -25.06467 -24.22969 -23.34754 -23.04389 -20.78698 -19.58173 -18.56531 -18.35522 -17.95145 -17.63751 -17.13428 -17.03702 -16.79666 -16.14877 -15.86779 -15.28922 -15.23232 -15.05857 -14.78155 -14.61679 -14.52272 -14.38987 -14.22287 -13.83524 -13.51699 -13.33781 -13.28234 -13.14264 -12.99971 -12.84365 -12.83717 -12.66188 -12.38352 -12.17892 -12.04773 -11.87758 -11.45616 -11.38464 -10.97812 -10.82729 -10.65148 -10.39361 -10.31648 -9.77237 -9.47140 -8.50074 -8.46302 -6.26027 0.25550 0.52633 1.26792 1.36653 1.46361 1.61939 1.85759 2.11521 2.21370 2.68506 2.83791 2.90230 2.97295 3.19436 3.71998 3.79301 4.00164 4.06422 4.19157 4.22975 4.27509 4.37799 4.41606 4.43339 4.49643 4.57282 4.60373 4.64590 4.69419 4.70816 4.76848 4.87829 4.94039 4.97223 5.03708 5.12202 5.38476 5.42526 5.51126 5.56442 5.68074 5.70187 6.09525 6.10686 6.17200 6.21919 6.52265 6.94435 7.37626 8.60673 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003680 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.821471 B = 7606.377185 C = 8307.633071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.593 5.593 4 C 0.127 3.873 5 C 0.229 3.771 6 O -0.405 6.405 7 C 0.010 3.990 8 O -0.399 6.399 9 C 0.016 3.984 10 C 0.568 3.432 11 O -0.555 6.555 12 C -0.153 4.153 13 C -0.069 4.069 14 C -0.145 4.145 15 C -0.079 4.079 16 C -0.167 4.167 17 C -0.068 4.068 18 S -0.012 6.012 19 C -0.572 4.572 20 H 0.099 0.901 21 C 0.022 3.978 22 N -0.906 5.906 23 Si 0.998 3.002 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.269 1.269 27 H 0.088 0.912 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.151 0.849 44 H 0.121 0.879 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 -16.405 -11.844 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.004 3.996 5 C 0.133 3.867 6 O -0.326 6.326 7 C -0.086 4.086 8 O -0.320 6.320 9 C -0.079 4.079 10 C 0.356 3.644 11 O -0.433 6.433 12 C -0.165 4.165 13 C -0.089 4.089 14 C -0.168 4.168 15 C -0.099 4.099 16 C -0.192 4.192 17 C -0.184 4.184 18 S 0.243 5.757 19 C -0.718 4.718 20 H 0.117 0.883 21 C -0.183 4.183 22 N -0.541 5.541 23 Si 0.819 3.181 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.194 1.194 27 H 0.107 0.893 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.163 0.837 42 H 0.182 0.818 43 H 0.169 0.831 44 H 0.138 0.862 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.477 -14.713 -12.614 22.031 hybrid contribution -0.594 0.284 1.346 1.498 sum 9.883 -14.429 -11.268 20.805 Atomic orbital electron populations 1.22153 0.96219 1.02898 1.01085 1.21945 0.93966 0.81001 1.04940 1.47611 1.65418 1.15193 1.04301 1.21634 0.93386 0.98424 0.86124 1.23940 0.90325 0.81131 0.91337 1.88267 1.23542 1.83371 1.37412 1.23258 0.84622 1.00409 1.00274 1.87998 1.44192 1.24545 1.75218 1.23188 0.86979 1.03000 0.94772 1.18338 0.76682 0.84840 0.84500 1.90754 1.44088 1.20788 1.87634 1.19488 1.03932 0.97974 0.95073 1.21234 0.97880 0.91694 0.98098 1.21283 1.00299 1.01789 0.93393 1.21462 0.94974 0.93376 1.00100 1.21441 1.03439 0.97831 0.96461 1.22643 0.99194 0.99599 0.96987 1.84100 1.41681 1.15569 1.34358 1.23811 1.23827 1.12901 1.11311 0.88327 1.26167 0.98347 0.93719 1.00098 1.70135 1.37732 1.11117 1.35098 0.84914 0.77182 0.78944 0.77053 1.17906 1.19711 1.19383 0.89321 0.95718 0.92274 0.87545 0.89409 0.85648 0.90519 0.89874 0.93082 0.90247 0.91254 0.92466 0.93619 0.87951 0.83685 0.81826 0.83140 0.86157 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 10.24 71.98 0.74 -3.56 16 2 C 0.10 2.63 5.68 86.38 0.49 3.12 16 3 N -0.59 -19.52 2.35 -825.65 -1.94 -21.46 16 4 C 0.13 3.59 5.62 86.38 0.49 4.07 16 5 C 0.23 5.55 3.17 71.98 0.23 5.77 16 6 O -0.41 -12.50 9.01 -121.05 -1.09 -13.59 16 7 C 0.01 0.22 10.66 113.37 1.21 1.42 16 8 O -0.40 -8.41 9.19 -126.21 -1.16 -9.57 16 9 C 0.02 0.22 9.85 113.37 1.12 1.34 16 10 C 0.57 24.32 5.98 86.66 0.52 24.84 16 11 O -0.55 -28.54 14.91 8.51 0.13 -28.42 16 12 C -0.15 -6.37 5.03 -19.95 -0.10 -6.47 16 13 C -0.07 -2.20 7.61 22.52 0.17 -2.03 16 14 C -0.15 -3.96 10.02 22.27 0.22 -3.73 16 15 C -0.08 -2.49 10.02 22.29 0.22 -2.27 16 16 C -0.17 -7.11 9.24 22.40 0.21 -6.90 16 17 C -0.07 -3.27 6.14 23.04 0.14 -3.13 16 18 S -0.01 -0.71 20.08 -56.49 -1.13 -1.84 16 19 C -0.57 -33.40 9.07 67.95 0.62 -32.78 16 20 H 0.10 5.43 4.85 -2.91 -0.01 5.42 16 21 C 0.02 1.27 5.49 84.87 0.47 1.74 16 22 N -0.91 -55.29 13.22 21.64 0.29 -55.00 16 23 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 2.18 7.02 -2.39 -0.02 2.16 16 31 H 0.09 2.22 4.15 -2.39 -0.01 2.21 16 32 H 0.13 2.61 8.07 -2.39 -0.02 2.59 16 33 H 0.08 2.59 7.48 -2.39 -0.02 2.57 16 34 H 0.08 1.54 7.63 -2.39 -0.02 1.53 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.07 1.11 4.50 -2.39 -0.01 1.10 16 38 H 0.06 0.59 7.85 -2.39 -0.02 0.57 16 39 H 0.05 0.65 5.86 -2.39 -0.01 0.64 16 40 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.15 3.80 7.16 -2.91 -0.02 3.78 16 42 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 43 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 44 H 0.12 5.48 4.98 -2.91 -0.01 5.47 16 45 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -81.86 376.30 4.86 -77.00 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 1.01 Total: 25.57 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 6.73 Total: -18.57 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -1.65 Total: -76.46 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -2.12 Total: -51.57 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -1.13 Total: -1.84 kcal Total: -81.86 4.86 -77.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350408361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.238 kcal (2) G-P(sol) polarization free energy of solvation -81.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds