Wall clock time and date at job start Tue Mar 31 2020 22:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45192 * 109.47324 * 2 1 4 4 C 1.34234 * 116.99997 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00016 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47112 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.47430 * 304.98536 * 7 6 4 9 9 O 1.42907 * 109.47029 * 64.98045 * 7 6 4 10 10 C 1.50691 * 109.47283 * 184.98048 * 7 6 4 11 11 O 1.21292 * 120.00080 * 252.84373 * 10 7 6 12 12 N 1.34780 * 120.00045 * 72.83981 * 10 7 6 13 13 C 1.46502 * 119.99855 * 5.01142 * 12 10 7 14 14 C 1.50696 * 109.46989 * 264.26265 * 13 12 10 15 15 H 1.08000 * 120.00042 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00129 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99868 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46997 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47080 * 119.99583 * 18 16 14 21 21 H 1.48503 * 109.46998 * 239.99678 * 18 16 14 22 22 C 1.40024 * 120.00082 * 185.00653 * 12 10 7 23 23 C 1.38848 * 120.04708 * 353.19466 * 22 12 10 24 24 C 1.38116 * 119.95478 * 180.25218 * 23 22 12 25 25 C 1.38473 * 120.04741 * 359.47320 * 24 23 22 26 26 F 1.35096 * 119.95838 * 180.23318 * 25 24 23 27 27 C 1.38477 * 120.08854 * 0.50327 * 25 24 23 28 28 C 1.38122 * 120.04219 * 359.77211 * 27 25 24 29 29 H 1.08996 * 109.46630 * 300.00102 * 1 2 3 30 30 H 1.08998 * 109.46638 * 59.99672 * 1 2 3 31 31 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47025 * 239.99540 * 2 1 3 33 33 H 1.09006 * 109.46909 * 120.00457 * 2 1 3 34 34 H 1.08997 * 109.47224 * 60.00176 * 6 4 3 35 35 H 1.08996 * 109.47117 * 299.99903 * 6 4 3 36 36 H 0.96697 * 113.99575 * 60.00133 * 9 7 6 37 37 H 1.09002 * 109.46707 * 24.26029 * 13 12 10 38 38 H 1.08997 * 109.46985 * 144.25774 * 13 12 10 39 39 H 0.96996 * 119.99935 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.02515 * 359.97438 * 23 22 12 41 41 H 1.08002 * 119.97389 * 179.72187 * 24 23 22 42 42 H 1.07992 * 119.98117 * 179.74649 * 27 25 24 43 43 H 1.07998 * 120.01891 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9209 2.9373 0.0012 7 6 5.4488 2.8571 0.0023 8 1 5.7802 2.2496 0.8444 9 8 5.8956 2.2633 -1.2183 10 6 6.0245 4.2442 0.1263 11 8 6.5479 4.7716 -0.8324 12 7 5.9578 4.8989 1.3025 13 6 5.4255 4.2226 2.4881 14 6 3.9654 4.5604 2.6459 15 1 3.4823 5.2139 1.9346 16 6 3.2464 4.0362 3.6991 17 7 3.8348 3.2408 4.5657 18 14 1.4363 4.4543 3.8944 19 1 1.0166 5.3613 2.7961 20 1 0.6318 3.2072 3.8419 21 1 1.2219 5.1272 5.2008 22 6 6.3972 6.2254 1.3913 23 6 7.0308 6.8219 0.3093 24 6 7.4682 8.1287 0.4009 25 6 7.2655 8.8477 1.5668 26 9 7.6899 10.1274 1.6527 27 6 6.6334 8.2549 2.6469 28 6 6.1996 6.9464 2.5614 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.5847 3.4692 0.8912 35 1 3.5853 3.4697 -0.8888 36 1 5.6361 2.7519 -2.0114 37 1 5.5387 3.1447 2.3729 38 1 5.9725 4.5531 3.3711 39 1 3.3289 2.8717 5.3064 40 1 7.1856 6.2628 -0.6017 41 1 7.9651 8.5915 -0.4390 42 1 6.4799 8.8159 3.5568 43 1 5.7070 6.4843 3.4042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362118366.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:11 Heat of formation + Delta-G solvation = -191.245512 kcal Electronic energy + Delta-G solvation = -30345.083057 eV Core-core repulsion = 25884.127188 eV Total energy + Delta-G solvation = -4460.955870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.77493 -42.21889 -41.36353 -39.54989 -38.01022 -37.20239 -37.04624 -34.66344 -33.10248 -32.26173 -32.03884 -30.46597 -29.30708 -26.88395 -25.36303 -24.15940 -23.82867 -23.14164 -22.00157 -21.03215 -19.17831 -18.83633 -18.65440 -18.53623 -18.29155 -17.75039 -17.44723 -16.84433 -16.63878 -16.51334 -16.37043 -16.13772 -15.85027 -15.31468 -15.08998 -14.84770 -14.53124 -14.40628 -14.22729 -14.06294 -13.81888 -13.62672 -13.57022 -13.44338 -13.05944 -12.88818 -12.84949 -12.69647 -12.61480 -12.50032 -12.26932 -12.02052 -11.88327 -11.68207 -11.50680 -11.48762 -10.86162 -10.66531 -10.26235 -10.01632 -8.81193 -8.25563 -6.40454 0.10418 0.34450 1.21342 1.27343 1.41959 1.48687 1.55814 1.71500 1.93062 2.38440 2.76619 3.03440 3.20504 3.32056 3.40804 3.51288 3.86055 3.92691 3.98570 4.00922 4.02205 4.10618 4.33557 4.34647 4.38376 4.45788 4.60941 4.80956 4.85289 4.90360 4.92201 5.04787 5.09902 5.13602 5.26637 5.28353 5.35596 5.47805 5.62183 5.64884 5.88957 6.12159 6.27618 6.56364 6.69952 6.76156 6.94780 7.29866 8.78524 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011579 B = 0.004158 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.488656 B = 6732.798004 C = 8444.166917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.365 6.365 4 C 0.476 3.524 5 O -0.527 6.527 6 C -0.163 4.163 7 C 0.127 3.873 8 H 0.118 0.882 9 O -0.537 6.537 10 C 0.493 3.507 11 O -0.537 6.537 12 N -0.530 5.530 13 C 0.234 3.766 14 C -0.542 4.542 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.907 5.907 18 Si 0.941 3.059 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.137 3.863 23 C -0.158 4.158 24 C -0.130 4.130 25 C 0.054 3.946 26 F -0.147 7.147 27 C -0.129 4.129 28 C -0.121 4.121 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.390 0.610 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.270 0.730 40 H 0.182 0.818 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 1.203 -7.171 7.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.282 6.282 4 C 0.320 3.680 5 O -0.416 6.416 6 C -0.200 4.200 7 C 0.064 3.936 8 H 0.136 0.864 9 O -0.343 6.343 10 C 0.284 3.716 11 O -0.418 6.418 12 N -0.250 5.250 13 C 0.114 3.886 14 C -0.579 4.579 15 H 0.088 0.912 16 C -0.166 4.166 17 N -0.545 5.545 18 Si 0.767 3.233 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.208 1.208 22 C 0.041 3.959 23 C -0.177 4.177 24 C -0.150 4.150 25 C 0.034 3.966 26 F -0.126 7.126 27 C -0.148 4.148 28 C -0.142 4.142 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.240 0.760 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.199 0.801 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.315 0.538 -7.096 7.483 hybrid contribution -0.959 0.459 0.492 1.171 sum -3.273 0.998 -6.604 7.438 Atomic orbital electron populations 1.21831 0.90405 1.04474 1.03554 1.23296 0.97156 0.79316 1.02464 1.86503 1.23996 1.33772 1.83903 1.23479 0.80697 0.92378 0.71404 1.90653 1.60810 1.43764 1.46389 1.22482 0.94283 0.92713 1.10523 1.21312 0.92032 0.90041 0.90193 0.86426 1.86682 1.80075 1.52377 1.15192 1.21654 0.79238 0.88789 0.81961 1.90260 1.45212 1.67302 1.39021 1.45975 1.56667 1.10708 1.11638 1.19567 0.94392 0.92797 0.81826 1.21420 0.94314 1.30578 1.11632 0.91187 1.25501 1.01859 0.94244 0.94952 1.69998 1.38182 1.31592 1.14682 0.85731 0.80723 0.78398 0.78461 1.18523 1.20566 1.20778 1.18343 0.97230 0.84609 0.95672 1.22623 0.98634 0.95539 1.00936 1.21285 1.01810 0.94387 0.97475 1.17804 1.02626 0.79723 0.96458 1.91445 1.88371 1.35938 1.96862 1.21084 0.99653 0.95025 0.99050 1.20973 1.01378 0.93979 0.97821 0.92201 0.90698 0.87758 0.90566 0.92196 0.83007 0.85064 0.76018 0.94180 0.94526 0.92109 0.80142 0.82771 0.82834 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.29 71.98 0.74 -1.96 16 2 C 0.05 1.31 6.19 71.98 0.45 1.76 16 3 O -0.36 -11.67 10.22 -51.45 -0.53 -12.20 16 4 C 0.48 16.69 7.84 71.24 0.56 17.24 16 5 O -0.53 -20.89 15.17 27.04 0.41 -20.48 16 6 C -0.16 -5.31 5.38 29.85 0.16 -5.15 16 7 C 0.13 4.39 2.14 29.84 0.06 4.46 16 8 H 0.12 4.53 6.35 -2.39 -0.02 4.52 16 9 O -0.54 -17.63 12.29 -122.73 -1.51 -19.14 16 10 C 0.49 17.95 6.93 87.65 0.61 18.56 16 11 O -0.54 -19.82 12.71 15.65 0.20 -19.62 16 12 N -0.53 -20.22 2.69 -635.25 -1.71 -21.93 16 13 C 0.23 9.84 4.12 85.63 0.35 10.19 16 14 C -0.54 -23.84 5.95 25.60 0.15 -23.68 16 15 H 0.07 3.08 7.59 -2.91 -0.02 3.06 16 16 C 0.04 1.74 5.46 84.65 0.46 2.20 16 17 N -0.91 -45.17 13.29 21.45 0.28 -44.89 16 18 Si 0.94 37.58 29.54 68.60 2.03 39.61 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 22 C 0.14 5.02 6.47 38.13 0.25 5.27 16 23 C -0.16 -5.34 9.05 22.39 0.20 -5.14 16 24 C -0.13 -3.83 10.02 22.30 0.22 -3.61 16 25 C 0.05 1.61 7.30 22.38 0.16 1.77 16 26 F -0.15 -4.25 17.26 44.97 0.78 -3.47 16 27 C -0.13 -3.89 10.02 22.30 0.22 -3.67 16 28 C -0.12 -4.22 9.02 22.39 0.20 -4.02 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 33 H 0.06 1.64 8.13 -2.38 -0.02 1.62 16 34 H 0.15 5.63 4.17 -2.39 -0.01 5.62 16 35 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.39 9.91 8.71 -74.06 -0.64 9.26 16 37 H 0.04 1.78 5.93 -2.39 -0.01 1.77 16 38 H 0.04 1.65 6.86 -2.39 -0.02 1.63 16 39 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 40 H 0.18 6.36 4.53 -62.02 -0.28 6.08 16 41 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 43 H 0.14 5.18 6.14 -2.91 -0.02 5.16 16 Total: -1.00 -55.95 364.20 4.92 -51.02 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.17 Total: 36.88 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 4.81 Total: 14.22 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -1.43 Total: -66.82 kcal Atomic # 8 Polarization: -70.01 SS G_CDS: -1.43 Total: -71.43 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -55.95 4.92 -51.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362118366.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.221 kcal (2) G-P(sol) polarization free energy of solvation -55.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds