Wall clock time and date at job start Tue Mar 31 2020 22:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81397 * 109.47261 * 2 1 4 4 O 1.42100 * 108.57628 * 65.51467 * 3 2 1 5 5 O 1.42101 * 108.58104 * 294.48776 * 3 2 1 6 6 C 1.81404 * 101.91939 * 179.97438 * 3 2 1 7 7 C 1.53000 * 109.46868 * 179.97438 * 6 3 2 8 8 N 1.46500 * 109.46803 * 179.97438 * 7 6 3 9 9 C 1.46500 * 119.99839 * 90.00608 * 8 7 6 10 10 C 1.34779 * 120.00221 * 270.27474 * 8 7 6 11 11 O 1.21284 * 120.00055 * 359.72820 * 10 8 7 12 12 C 1.50703 * 119.99796 * 179.72435 * 10 8 7 13 13 H 1.08990 * 109.47397 * 300.00234 * 12 10 8 14 14 C 1.50695 * 109.47050 * 60.00706 * 12 10 8 15 15 H 1.08001 * 120.00162 * 27.28875 * 14 12 10 16 16 C 1.37882 * 119.99859 * 207.29545 * 14 12 10 17 17 N 1.31508 * 120.00077 * 5.90707 * 16 14 12 18 18 Si 1.86803 * 119.99872 * 185.90888 * 16 14 12 19 19 H 1.48495 * 109.46901 * 89.99968 * 18 16 14 20 20 H 1.48497 * 109.47058 * 209.99828 * 18 16 14 21 21 H 1.48496 * 109.47176 * 329.99830 * 18 16 14 22 22 C 1.50705 * 109.46920 * 180.02562 * 12 10 8 23 23 C 1.38230 * 120.00169 * 293.57476 * 22 12 10 24 24 C 1.38231 * 120.00209 * 179.78958 * 23 22 12 25 25 C 1.38241 * 119.99972 * 0.43442 * 24 23 22 26 26 C 1.38238 * 119.99532 * 359.81508 * 25 24 23 27 27 C 1.38231 * 120.00288 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46891 * 59.99867 * 1 2 3 29 29 H 1.09000 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46913 * 300.00375 * 1 2 3 31 31 H 1.09002 * 109.46455 * 239.99898 * 2 1 3 32 32 H 1.08998 * 109.46891 * 120.00133 * 2 1 3 33 33 H 1.08995 * 109.46930 * 60.00167 * 6 3 2 34 34 H 1.09004 * 109.47000 * 299.99954 * 6 3 2 35 35 H 1.09004 * 109.46940 * 60.00395 * 7 6 3 36 36 H 1.08992 * 109.47629 * 300.00025 * 7 6 3 37 37 H 1.08994 * 109.47544 * 89.99632 * 9 8 7 38 38 H 1.08996 * 109.46997 * 209.99777 * 9 8 7 39 39 H 1.09000 * 109.46920 * 329.99594 * 9 8 7 40 40 H 0.96996 * 120.00082 * 179.97438 * 17 16 14 41 41 H 1.08004 * 119.99763 * 359.97438 * 23 22 12 42 42 H 1.07999 * 120.00598 * 180.27184 * 24 23 22 43 43 H 1.08000 * 120.00469 * 179.83907 * 25 24 23 44 44 H 1.08005 * 119.99798 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00526 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3231 1.2258 5 8 1.7593 2.3232 -1.2258 6 6 3.9331 1.4718 0.0008 7 6 4.6282 2.8347 0.0002 8 7 6.0805 2.6422 0.0015 9 6 6.8076 2.5450 -1.2666 10 6 6.7469 2.5489 1.1693 11 8 6.1450 2.6294 2.2191 12 6 8.2400 2.3446 1.1704 13 1 8.4799 1.4145 0.6554 14 6 8.9052 3.4968 0.4627 15 1 8.4286 4.4657 0.4421 16 6 10.1224 3.3140 -0.1588 17 7 10.6478 2.1108 -0.2348 18 14 11.0253 4.7754 -0.8926 19 1 11.9187 5.3711 0.1331 20 1 11.8350 4.3251 -2.0531 21 1 10.0398 5.7917 -1.3412 22 6 8.7362 2.2736 2.5917 23 6 8.6651 3.3890 3.4051 24 6 9.1162 3.3227 4.7101 25 6 9.6467 2.1434 5.1989 26 6 9.7225 1.0295 4.3838 27 6 9.2674 1.0946 3.0802 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.2260 0.9146 -0.8890 34 1 4.2253 0.9147 0.8910 35 1 4.3352 3.3924 0.8899 36 1 4.3359 3.3914 -0.8901 37 1 7.1229 3.5396 -1.5818 38 1 7.6840 1.9106 -1.1352 39 1 6.1566 2.1125 -2.0264 40 1 11.5038 1.9821 -0.6723 41 1 8.2544 4.3115 3.0219 42 1 9.0567 4.1928 5.3470 43 1 10.0015 2.0922 6.2177 44 1 10.1373 0.1082 4.7656 45 1 9.3270 0.2245 2.4433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362317347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:00 Heat of formation + Delta-G solvation = -82.845011 kcal Electronic energy + Delta-G solvation = -27773.995840 eV Core-core repulsion = 23883.953745 eV Total energy + Delta-G solvation = -3890.042095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.46162 -37.91086 -37.04633 -36.12301 -35.22221 -33.85630 -33.42461 -31.52655 -30.88289 -29.95096 -27.43380 -26.15234 -24.89948 -23.96337 -22.84803 -21.60399 -20.57828 -18.96763 -18.47279 -17.19473 -16.82877 -16.49632 -16.10353 -15.96483 -15.94756 -15.27548 -14.73600 -14.50957 -14.38089 -14.05515 -13.93184 -13.66077 -13.47611 -12.84454 -12.77303 -12.62120 -12.40254 -12.34217 -12.16564 -12.12264 -12.06255 -11.84891 -11.77427 -11.68025 -11.41727 -11.22164 -11.06923 -11.03864 -10.98031 -10.56506 -10.40322 -10.29428 -10.03006 -9.48433 -8.80725 -8.64034 -8.12109 -7.95741 -7.63553 -6.32080 -4.36173 -0.16847 2.36203 2.38698 2.62404 3.17579 3.25583 3.26502 3.37986 3.55035 3.79851 3.87294 4.24634 4.35919 4.44410 4.67253 4.76072 4.81422 4.90078 5.05207 5.27370 5.32388 5.37302 5.52656 5.61692 5.70743 5.74257 5.77368 5.83538 5.88959 6.11245 6.19521 6.30262 6.47181 6.56311 6.61535 6.83611 6.93510 7.12460 7.13539 7.35551 7.43013 7.58718 7.72015 7.92446 7.97994 8.12102 8.64470 9.06647 9.27997 10.76447 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.003513 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.275400 B = 7967.874115 C = 9428.197643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.616 4.616 3 S 2.418 3.582 4 O -0.933 6.933 5 O -0.940 6.940 6 C -0.627 4.627 7 C 0.129 3.871 8 N -0.609 5.609 9 C 0.093 3.907 10 C 0.526 3.474 11 O -0.559 6.559 12 C 0.054 3.946 13 H 0.088 0.912 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.077 3.923 17 N -0.878 5.878 18 Si 0.894 3.106 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.011 4.011 23 C -0.084 4.084 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.133 4.133 27 C -0.117 4.117 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.267 0.733 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -5.869 -1.775 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.745 4.745 3 S 2.600 3.400 4 O -0.930 6.930 5 O -0.937 6.937 6 C -0.757 4.757 7 C 0.003 3.997 8 N -0.342 5.342 9 C -0.050 4.050 10 C 0.317 3.683 11 O -0.438 6.438 12 C 0.033 3.967 13 H 0.105 0.895 14 C -0.550 4.550 15 H 0.081 0.919 16 C -0.128 4.128 17 N -0.514 5.514 18 Si 0.721 3.279 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.012 4.012 23 C -0.102 4.102 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.151 4.151 27 C -0.136 4.136 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.168 -5.147 -1.312 13.276 hybrid contribution 1.309 -0.189 -0.489 1.410 sum -10.858 -5.335 -1.801 12.232 Atomic orbital electron populations 1.21507 0.90490 1.04714 1.03715 1.30226 1.07380 1.25295 1.11585 1.08104 0.78302 0.78185 0.75443 1.93606 1.81160 1.72909 1.45355 1.93577 1.81369 1.73128 1.45666 1.30791 1.23750 1.09226 1.11960 1.20900 0.82944 0.91673 1.04135 1.47715 1.04925 1.73739 1.07850 1.21812 0.96665 1.03165 0.83332 1.21793 0.91319 0.73274 0.81877 1.90601 1.70769 1.51049 1.31357 1.18126 0.85748 1.01606 0.91218 0.89464 1.20622 1.05030 0.95158 1.34202 0.91933 1.24892 0.97031 0.95835 0.95046 1.69876 1.18489 1.20654 1.42339 0.86544 0.80016 0.82604 0.78710 1.20362 1.21030 1.19591 1.20023 0.94185 0.91907 0.95123 1.20835 0.98092 0.98443 0.92843 1.20962 1.00868 0.97321 0.96102 1.20804 1.02962 0.93914 0.98937 1.20894 1.01737 0.97805 0.94641 1.20959 0.99999 0.97778 0.94819 0.90878 0.90215 0.90804 0.85049 0.84921 0.84966 0.84503 0.88758 0.89586 0.92117 0.88820 0.93571 0.92318 0.87066 0.87572 0.87718 0.87603 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.92 37.16 0.37 -0.68 16 2 C -0.62 -4.38 6.52 37.16 0.24 -4.13 16 3 S 2.42 26.23 4.72 -107.50 -0.51 25.72 16 4 O -0.93 -13.85 18.10 -57.83 -1.05 -14.90 16 5 O -0.94 -12.57 18.10 -57.83 -1.05 -13.62 16 6 C -0.63 -7.18 6.13 37.16 0.23 -6.95 16 7 C 0.13 1.96 5.41 -4.04 -0.02 1.94 16 8 N -0.61 -10.98 2.87 -181.58 -0.52 -11.50 16 9 C 0.09 1.52 9.15 59.85 0.55 2.07 16 10 C 0.53 11.37 6.96 -10.98 -0.08 11.30 16 11 O -0.56 -13.26 15.01 5.55 0.08 -13.18 16 12 C 0.05 1.23 1.55 -94.07 -0.15 1.09 16 13 H 0.09 2.08 6.46 -51.93 -0.34 1.75 16 14 C -0.51 -12.24 5.49 -34.44 -0.19 -12.43 16 15 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 16 C 0.08 1.86 5.45 -17.82 -0.10 1.76 16 17 N -0.88 -22.06 12.88 55.43 0.71 -21.35 16 18 Si 0.89 19.42 29.54 -169.99 -5.02 14.40 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 22 C -0.01 -0.26 4.30 -104.62 -0.45 -0.71 16 23 C -0.08 -1.88 8.33 -39.59 -0.33 -2.21 16 24 C -0.13 -2.66 10.05 -39.58 -0.40 -3.06 16 25 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 26 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 27 C -0.12 -2.52 9.67 -39.58 -0.38 -2.90 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.14 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.09 1.58 7.42 -51.93 -0.39 1.19 16 36 H 0.09 1.11 8.07 -51.93 -0.42 0.69 16 37 H 0.06 1.02 7.90 -51.93 -0.41 0.61 16 38 H 0.09 1.73 6.13 -51.93 -0.32 1.41 16 39 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 41 H 0.11 2.53 7.88 -52.48 -0.41 2.11 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 44 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 45 H 0.11 2.28 7.96 -52.49 -0.42 1.86 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -33.08 388.75 -9.88 -42.96 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.89 Total: 6.62 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.50 Total: -21.01 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.19 Total: -32.85 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -2.01 Total: -41.70 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 26.23 SS G_CDS: -0.51 Total: 25.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.08 -9.88 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362317347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.889 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds