Wall clock time and date at job start Tue Mar 31 2020 22:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81397 * 109.47261 * 2 1 4 4 O 1.42100 * 108.57628 * 65.51467 * 3 2 1 5 5 O 1.42101 * 108.58104 * 294.48776 * 3 2 1 6 6 C 1.81404 * 101.91939 * 179.97438 * 3 2 1 7 7 C 1.53000 * 109.46868 * 179.97438 * 6 3 2 8 8 N 1.46500 * 109.46803 * 179.97438 * 7 6 3 9 9 C 1.46500 * 119.99839 * 90.00608 * 8 7 6 10 10 C 1.34779 * 120.00221 * 270.27474 * 8 7 6 11 11 O 1.21284 * 120.00055 * 359.72820 * 10 8 7 12 12 C 1.50703 * 119.99796 * 179.72435 * 10 8 7 13 13 H 1.08990 * 109.47397 * 300.00234 * 12 10 8 14 14 C 1.50695 * 109.47050 * 60.00706 * 12 10 8 15 15 H 1.08001 * 120.00162 * 27.28875 * 14 12 10 16 16 C 1.37882 * 119.99859 * 207.29545 * 14 12 10 17 17 N 1.31508 * 120.00077 * 5.90707 * 16 14 12 18 18 Si 1.86803 * 119.99872 * 185.90888 * 16 14 12 19 19 H 1.48495 * 109.46901 * 89.99968 * 18 16 14 20 20 H 1.48497 * 109.47058 * 209.99828 * 18 16 14 21 21 H 1.48496 * 109.47176 * 329.99830 * 18 16 14 22 22 C 1.50705 * 109.46920 * 180.02562 * 12 10 8 23 23 C 1.38230 * 120.00169 * 293.57476 * 22 12 10 24 24 C 1.38231 * 120.00209 * 179.78958 * 23 22 12 25 25 C 1.38241 * 119.99972 * 0.43442 * 24 23 22 26 26 C 1.38238 * 119.99532 * 359.81508 * 25 24 23 27 27 C 1.38231 * 120.00288 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46891 * 59.99867 * 1 2 3 29 29 H 1.09000 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46913 * 300.00375 * 1 2 3 31 31 H 1.09002 * 109.46455 * 239.99898 * 2 1 3 32 32 H 1.08998 * 109.46891 * 120.00133 * 2 1 3 33 33 H 1.08995 * 109.46930 * 60.00167 * 6 3 2 34 34 H 1.09004 * 109.47000 * 299.99954 * 6 3 2 35 35 H 1.09004 * 109.46940 * 60.00395 * 7 6 3 36 36 H 1.08992 * 109.47629 * 300.00025 * 7 6 3 37 37 H 1.08994 * 109.47544 * 89.99632 * 9 8 7 38 38 H 1.08996 * 109.46997 * 209.99777 * 9 8 7 39 39 H 1.09000 * 109.46920 * 329.99594 * 9 8 7 40 40 H 0.96996 * 120.00082 * 179.97438 * 17 16 14 41 41 H 1.08004 * 119.99763 * 359.97438 * 23 22 12 42 42 H 1.07999 * 120.00598 * 180.27184 * 24 23 22 43 43 H 1.08000 * 120.00469 * 179.83907 * 25 24 23 44 44 H 1.08005 * 119.99798 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00526 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3231 1.2258 5 8 1.7593 2.3232 -1.2258 6 6 3.9331 1.4718 0.0008 7 6 4.6282 2.8347 0.0002 8 7 6.0805 2.6422 0.0015 9 6 6.8076 2.5450 -1.2666 10 6 6.7469 2.5489 1.1693 11 8 6.1450 2.6294 2.2191 12 6 8.2400 2.3446 1.1704 13 1 8.4799 1.4145 0.6554 14 6 8.9052 3.4968 0.4627 15 1 8.4286 4.4657 0.4421 16 6 10.1224 3.3140 -0.1588 17 7 10.6478 2.1108 -0.2348 18 14 11.0253 4.7754 -0.8926 19 1 11.9187 5.3711 0.1331 20 1 11.8350 4.3251 -2.0531 21 1 10.0398 5.7917 -1.3412 22 6 8.7362 2.2736 2.5917 23 6 8.6651 3.3890 3.4051 24 6 9.1162 3.3227 4.7101 25 6 9.6467 2.1434 5.1989 26 6 9.7225 1.0295 4.3838 27 6 9.2674 1.0946 3.0802 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.2260 0.9146 -0.8890 34 1 4.2253 0.9147 0.8910 35 1 4.3352 3.3924 0.8899 36 1 4.3359 3.3914 -0.8901 37 1 7.1229 3.5396 -1.5818 38 1 7.6840 1.9106 -1.1352 39 1 6.1566 2.1125 -2.0264 40 1 11.5038 1.9821 -0.6723 41 1 8.2544 4.3115 3.0219 42 1 9.0567 4.1928 5.3470 43 1 10.0015 2.0922 6.2177 44 1 10.1373 0.1082 4.7656 45 1 9.3270 0.2245 2.4433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362317347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:59 Heat of formation + Delta-G solvation = -104.377570 kcal Electronic energy + Delta-G solvation = -27774.929562 eV Core-core repulsion = 23883.953745 eV Total energy + Delta-G solvation = -3890.975817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08228 -39.46924 -38.02840 -37.11491 -36.71471 -35.61755 -34.00728 -33.07622 -32.29568 -31.53844 -29.08675 -27.52572 -26.22274 -25.21266 -24.01715 -23.20265 -22.10881 -20.03281 -19.84327 -18.73813 -18.06733 -17.83867 -17.52829 -17.15846 -16.98607 -16.76234 -16.25226 -15.91587 -15.56152 -15.42014 -15.28595 -14.92746 -14.40096 -14.16208 -14.07272 -13.96972 -13.88780 -13.52217 -13.41172 -13.31999 -13.28618 -13.16763 -13.06593 -12.92472 -12.82637 -12.73713 -12.41484 -12.31978 -12.18276 -11.96868 -11.93378 -11.64668 -11.34587 -11.26411 -10.65877 -10.38676 -9.59698 -9.55256 -9.26459 -8.19512 -6.27352 -1.02036 0.75372 0.79838 1.41515 1.46217 1.52386 1.80220 1.85411 2.22209 2.43362 2.69197 3.06857 3.09895 3.25580 3.61435 3.68959 3.76782 3.94473 4.19010 4.25058 4.27215 4.29511 4.41805 4.42178 4.47442 4.52477 4.60430 4.75566 4.76576 4.85833 4.87267 4.93605 4.98684 5.11727 5.12938 5.24822 5.35960 5.44533 5.66527 5.71237 5.78185 5.83933 5.95247 6.23536 6.37653 6.51784 6.74349 7.36655 7.42316 8.88661 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.003513 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.275400 B = 7967.874115 C = 9428.197643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.589 4.589 3 S 2.423 3.577 4 O -0.983 6.983 5 O -0.969 6.969 6 C -0.625 4.625 7 C 0.115 3.885 8 N -0.604 5.604 9 C 0.093 3.907 10 C 0.521 3.479 11 O -0.589 6.589 12 C 0.058 3.942 13 H 0.071 0.929 14 C -0.509 4.509 15 H 0.048 0.952 16 C 0.045 3.955 17 N -0.899 5.899 18 Si 0.942 3.058 19 H -0.287 1.287 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.038 4.038 23 C -0.112 4.112 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.139 4.139 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.267 0.733 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 -7.520 -1.862 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.722 4.722 3 S 2.609 3.391 4 O -0.980 6.980 5 O -0.966 6.966 6 C -0.755 4.755 7 C -0.010 4.010 8 N -0.336 5.336 9 C -0.049 4.049 10 C 0.312 3.688 11 O -0.470 6.470 12 C 0.037 3.963 13 H 0.089 0.911 14 C -0.547 4.547 15 H 0.066 0.934 16 C -0.158 4.158 17 N -0.536 5.536 18 Si 0.769 3.231 19 H -0.213 1.213 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.039 4.039 23 C -0.131 4.131 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.148 4.148 27 C -0.157 4.157 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.184 0.816 32 H 0.172 0.828 33 H 0.184 0.816 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.151 0.849 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.481 -6.748 -1.434 14.261 hybrid contribution 1.330 0.258 -0.437 1.424 sum -11.151 -6.490 -1.871 13.037 Atomic orbital electron populations 1.21709 0.90321 1.06312 1.03609 1.30013 1.07308 1.20370 1.14486 1.07769 0.77487 0.80092 0.73752 1.93543 1.81622 1.75751 1.47121 1.93534 1.81421 1.75462 1.46230 1.30732 1.24182 1.07028 1.13513 1.21136 0.81336 0.94313 1.04172 1.47709 1.06312 1.72324 1.07278 1.21844 0.96898 1.02615 0.83521 1.21615 0.91057 0.73535 0.82587 1.90566 1.71106 1.52736 1.32576 1.17997 0.86689 1.00283 0.91346 0.91107 1.20590 1.05178 0.94791 1.34155 0.93400 1.25371 0.97453 0.97476 0.95460 1.69954 1.18699 1.21769 1.43179 0.85793 0.78943 0.80439 0.77971 1.21325 1.20277 1.19168 1.20153 0.95391 0.92967 0.95407 1.20860 0.99935 0.97774 0.94492 1.21317 0.99892 0.99092 0.95214 1.21269 1.01443 0.92821 1.00631 1.21310 1.00383 0.99515 0.93544 1.21127 1.00941 0.97326 0.96319 0.90770 0.87595 0.91481 0.81592 0.82777 0.81584 0.84829 0.91206 0.87274 0.92885 0.91075 0.89105 0.92365 0.88930 0.84928 0.83635 0.84180 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.92 71.98 0.71 -1.16 16 2 C -0.59 -6.39 6.52 71.98 0.47 -5.92 16 3 S 2.42 50.42 4.72 -56.49 -0.27 50.16 16 4 O -0.98 -29.95 18.10 -127.37 -2.30 -32.26 16 5 O -0.97 -25.10 18.10 -127.37 -2.31 -27.40 16 6 C -0.63 -13.64 6.13 71.98 0.44 -13.19 16 7 C 0.11 3.51 5.41 86.38 0.47 3.98 16 8 N -0.60 -22.18 2.87 -846.77 -2.43 -24.61 16 9 C 0.09 3.05 9.15 127.77 1.17 4.22 16 10 C 0.52 23.50 6.96 87.66 0.61 24.11 16 11 O -0.59 -29.26 15.01 -3.04 -0.05 -29.31 16 12 C 0.06 2.76 1.55 -13.03 -0.02 2.74 16 13 H 0.07 3.55 6.46 -2.39 -0.02 3.54 16 14 C -0.51 -25.24 5.49 25.60 0.14 -25.10 16 15 H 0.05 2.46 7.82 -2.91 -0.02 2.44 16 16 C 0.04 2.22 5.45 84.66 0.46 2.68 16 17 N -0.90 -46.04 12.88 21.45 0.28 -45.76 16 18 Si 0.94 40.28 29.54 68.60 2.03 42.30 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 C -0.04 -1.82 4.30 -19.86 -0.09 -1.90 16 23 C -0.11 -5.18 8.33 22.27 0.19 -5.00 16 24 C -0.14 -5.31 10.05 22.27 0.22 -5.08 16 25 C -0.14 -4.98 10.05 22.27 0.22 -4.75 16 26 C -0.13 -4.73 10.05 22.27 0.22 -4.51 16 27 C -0.14 -6.02 9.67 22.27 0.22 -5.81 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.17 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.07 2.47 7.42 -2.38 -0.02 2.46 16 36 H 0.11 2.77 8.07 -2.39 -0.02 2.75 16 37 H 0.05 1.80 7.90 -2.39 -0.02 1.78 16 38 H 0.07 2.68 6.13 -2.39 -0.01 2.66 16 39 H 0.09 2.13 8.07 -2.39 -0.02 2.11 16 40 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 41 H 0.09 4.47 7.88 -2.91 -0.02 4.44 16 42 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 44 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.11 4.61 7.96 -2.91 -0.02 4.59 16 Total: -1.00 -75.09 388.75 1.36 -73.74 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.97 Total: 27.84 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 5.44 Total: -34.69 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -2.16 Total: -70.38 kcal Atomic # 8 Polarization: -84.31 SS G_CDS: -4.66 Total: -88.97 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 50.42 SS G_CDS: -0.27 Total: 50.16 kcal Total: -75.09 1.36 -73.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362317347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.642 kcal (2) G-P(sol) polarization free energy of solvation -75.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds