Wall clock time and date at job start Tue Mar 31 2020 22:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00260 * 2 1 4 4 H 1.09006 * 109.21715 * 355.49149 * 3 2 1 5 5 C 1.50634 * 109.25775 * 114.93811 * 3 2 1 6 6 C 1.38908 * 117.74697 * 317.78489 * 5 3 2 7 7 C 1.37932 * 120.54690 * 180.21409 * 6 5 3 8 8 C 1.38262 * 119.76944 * 359.97438 * 7 6 5 9 9 C 1.37939 * 119.77091 * 359.89426 * 8 7 6 10 10 C 1.37660 * 122.57081 * 137.79728 * 5 3 2 11 11 C 1.50630 * 122.56885 * 359.58906 * 10 5 3 12 12 C 1.52755 * 110.57683 * 17.63100 * 11 10 5 13 13 C 1.52728 * 109.25113 * 236.05322 * 3 2 1 14 14 H 1.09004 * 109.68064 * 308.44349 * 13 3 2 15 15 S 1.81397 * 109.68710 * 68.96004 * 13 3 2 16 16 O 1.42099 * 110.53975 * 68.37342 * 15 13 3 17 17 O 1.42100 * 110.54309 * 291.62924 * 15 13 3 18 18 N 1.65592 * 104.45480 * 180.02562 * 15 13 3 19 19 C 1.46499 * 119.99944 * 64.99803 * 18 15 13 20 20 H 1.08996 * 109.47177 * 335.00106 * 19 18 15 21 21 C 1.52996 * 109.47045 * 95.00253 * 19 18 15 22 22 C 1.50702 * 109.47279 * 215.00273 * 19 18 15 23 23 H 1.07999 * 120.00079 * 359.97438 * 22 19 18 24 24 C 1.37877 * 120.00085 * 180.02562 * 22 19 18 25 25 N 1.31522 * 119.99859 * 359.97438 * 24 22 19 26 26 Si 1.86794 * 120.00128 * 179.97438 * 24 22 19 27 27 H 1.48507 * 109.47270 * 89.99373 * 26 24 22 28 28 H 1.48492 * 109.47313 * 209.99868 * 26 24 22 29 29 H 1.48507 * 109.47167 * 329.99993 * 26 24 22 30 30 H 1.08998 * 109.47005 * 61.27365 * 1 2 3 31 31 H 1.09005 * 109.47093 * 181.27753 * 1 2 3 32 32 H 1.09004 * 109.47355 * 301.27174 * 1 2 3 33 33 H 1.07997 * 119.73059 * 0.21125 * 6 5 3 34 34 H 1.08002 * 120.11938 * 179.97438 * 7 6 5 35 35 H 1.08005 * 120.11566 * 179.97438 * 8 7 6 36 36 H 1.08005 * 119.72639 * 179.97438 * 9 8 7 37 37 H 1.09001 * 109.26018 * 137.92313 * 11 10 5 38 38 H 1.09008 * 109.25364 * 257.38996 * 11 10 5 39 39 H 1.09004 * 109.68002 * 189.16989 * 12 11 10 40 40 H 1.08997 * 109.70400 * 68.59955 * 12 11 10 41 41 H 0.97000 * 120.00055 * 245.00349 * 18 15 13 42 42 H 1.09005 * 109.47240 * 60.00153 * 21 19 18 43 43 H 1.08999 * 109.47456 * 300.00344 * 21 19 18 44 44 H 1.09002 * 109.47570 * 180.02562 * 21 19 18 45 45 H 0.96998 * 119.99220 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2188 2.0506 -0.0809 5 6 2.7601 1.5153 1.2895 6 6 2.1638 1.0734 2.4637 7 6 2.7973 1.2402 3.6775 8 6 4.0363 1.8518 3.7269 9 6 4.6313 2.2888 2.5617 10 6 3.9953 2.1209 1.3383 11 6 4.7048 2.6163 0.1053 12 6 3.7254 2.7538 -1.0589 13 6 2.9506 1.4379 -1.1961 14 1 3.6481 0.6003 -1.2093 15 16 1.9865 1.4540 -2.7326 16 8 1.2202 2.6469 -2.8278 17 8 1.3948 0.1829 -2.9634 18 7 3.1204 1.5996 -3.9306 19 6 4.0917 0.5260 -4.1542 20 1 4.2253 -0.0408 -3.2328 21 6 3.5792 -0.4043 -5.2554 22 6 5.4111 1.1214 -4.5734 23 1 5.5156 2.1925 -4.6645 24 6 6.4846 0.2988 -4.8415 25 7 6.3573 -1.0056 -4.7309 26 14 8.1198 1.0368 -5.3618 27 1 8.9461 1.3079 -4.1579 28 1 8.8340 0.0828 -6.2477 29 1 7.8795 2.3067 -6.0933 30 1 -0.3633 0.4939 -0.9012 31 1 -0.3633 -1.0275 0.0229 32 1 -0.3634 0.5335 0.8784 33 1 1.1961 0.5953 2.4259 34 1 2.3271 0.8944 4.5862 35 1 4.5372 1.9856 4.6743 36 1 5.5990 2.7668 2.6011 37 1 5.1535 3.5875 0.3144 38 1 5.4887 1.9094 -0.1668 39 1 4.2747 2.9542 -1.9789 40 1 3.0308 3.5699 -0.8603 41 1 3.1416 2.3958 -4.4842 42 1 3.4456 0.1626 -6.1769 43 1 2.6248 -0.8349 -4.9523 44 1 4.3016 -1.2034 -5.4215 45 1 7.1127 -1.5842 -4.9192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363968033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:11 Heat of formation + Delta-G solvation = -118.445846 kcal Electronic energy + Delta-G solvation = -28992.892155 eV Core-core repulsion = 25101.306292 eV Total energy + Delta-G solvation = -3891.585863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33858 -38.84895 -38.22771 -37.38745 -37.03333 -36.56803 -34.10491 -32.85631 -31.42400 -30.15944 -29.79981 -27.52510 -27.21792 -24.84192 -24.11302 -23.03769 -22.83005 -21.01990 -20.06890 -19.24995 -18.31914 -18.07649 -17.85655 -17.21083 -17.11703 -16.47019 -16.37732 -16.21318 -15.71428 -15.57332 -15.36569 -14.71532 -14.55728 -14.38585 -14.17032 -13.97369 -13.84874 -13.57425 -13.37289 -13.30192 -13.24724 -13.11998 -12.97659 -12.81120 -12.75632 -12.41899 -12.35298 -12.32405 -12.22508 -12.16855 -11.96959 -11.65078 -11.49485 -11.09638 -10.75976 -10.55503 -10.06023 -9.71268 -9.53537 -8.11220 -6.26415 -0.71036 0.34838 0.46629 1.47434 1.49884 1.58841 1.83230 2.42386 2.46523 2.71815 2.88175 3.18197 3.18818 3.27252 3.57515 3.59857 3.82634 3.93899 4.01646 4.10758 4.23143 4.31591 4.34942 4.44175 4.47709 4.54482 4.63602 4.66252 4.76046 4.84437 4.89330 4.96153 5.05111 5.10345 5.11651 5.16056 5.20809 5.54359 5.60070 5.60215 5.68605 5.73161 5.94200 6.02206 6.09101 6.09455 6.42321 6.85323 7.44023 8.94242 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.004620 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.282269 B = 6058.635831 C = 7476.143659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.390 6.390 3 C 0.146 3.854 4 H 0.092 0.908 5 C -0.108 4.108 6 C -0.112 4.112 7 C -0.131 4.131 8 C -0.114 4.114 9 C -0.130 4.130 10 C -0.075 4.075 11 C -0.075 4.075 12 C -0.100 4.100 13 C -0.586 4.586 14 H 0.137 0.863 15 S 2.612 3.388 16 O -0.989 6.989 17 O -0.982 6.982 18 N -1.100 6.100 19 C 0.280 3.720 20 H 0.021 0.979 21 C -0.153 4.153 22 C -0.534 4.534 23 H 0.074 0.926 24 C 0.018 3.982 25 N -0.917 5.917 26 Si 0.961 3.039 27 H -0.274 1.274 28 H -0.290 1.290 29 H -0.265 1.265 30 H 0.032 0.968 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.415 0.585 42 H 0.036 0.964 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 7.743 16.335 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.309 6.309 3 C 0.087 3.913 4 H 0.109 0.891 5 C -0.109 4.109 6 C -0.130 4.130 7 C -0.148 4.148 8 C -0.132 4.132 9 C -0.148 4.148 10 C -0.075 4.075 11 C -0.113 4.113 12 C -0.138 4.138 13 C -0.697 4.697 14 H 0.155 0.845 15 S 2.707 3.293 16 O -0.979 6.979 17 O -0.972 6.972 18 N -0.860 5.860 19 C 0.175 3.825 20 H 0.039 0.961 21 C -0.213 4.213 22 C -0.573 4.573 23 H 0.092 0.908 24 C -0.182 4.182 25 N -0.555 5.555 26 Si 0.787 3.213 27 H -0.199 1.199 28 H -0.216 1.216 29 H -0.190 1.190 30 H 0.051 0.949 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.250 0.750 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.191 7.163 16.255 18.811 hybrid contribution 1.167 0.139 -0.651 1.343 sum -5.024 7.302 15.604 17.946 Atomic orbital electron populations 1.23301 0.79309 1.05280 1.00865 1.88075 1.21553 1.26425 1.94828 1.20480 0.93707 0.86136 0.90976 0.89077 1.19606 0.95863 1.01629 0.93797 1.21262 1.00822 0.98918 0.92010 1.21380 0.95977 0.99633 0.97846 1.21482 0.95402 0.97247 0.99049 1.21432 1.00809 1.01053 0.91494 1.19831 0.93403 0.98070 0.96172 1.20484 0.97076 1.03080 0.90636 1.21420 0.98678 0.91939 1.01742 1.30678 1.13168 1.09052 1.16821 0.84468 1.04715 0.74625 0.73298 0.76632 1.93502 1.69166 1.48589 1.86654 1.93538 1.75587 1.44120 1.83971 1.55375 1.51337 1.30066 1.49185 1.18235 0.86249 0.83686 0.94327 0.96128 1.22151 0.98807 1.01029 0.99284 1.21584 0.94840 0.94059 1.46865 0.90754 1.25696 1.02279 0.95081 0.95151 1.70023 1.32250 1.03891 1.49366 0.85502 0.79313 0.78262 0.78216 1.19924 1.21555 1.18962 0.94927 0.87215 0.90550 0.85334 0.83485 0.83214 0.83886 0.87282 0.90406 0.88663 0.88816 0.75030 0.94494 0.95689 0.91088 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.42 113.37 1.18 1.38 16 2 O -0.39 -12.42 9.17 -148.98 -1.37 -13.78 16 3 C 0.15 4.37 2.10 29.74 0.06 4.43 16 4 H 0.09 2.44 7.57 -2.38 -0.02 2.42 16 5 C -0.11 -2.91 5.57 -19.86 -0.11 -3.02 16 6 C -0.11 -2.59 9.24 22.36 0.21 -2.39 16 7 C -0.13 -2.44 10.05 22.20 0.22 -2.22 16 8 C -0.11 -2.02 10.05 22.20 0.22 -1.80 16 9 C -0.13 -2.64 9.61 22.36 0.21 -2.43 16 10 C -0.07 -1.87 5.74 -19.86 -0.11 -1.98 16 11 C -0.08 -1.82 5.67 29.74 0.17 -1.66 16 12 C -0.10 -2.74 5.20 30.62 0.16 -2.59 16 13 C -0.59 -19.35 2.32 30.61 0.07 -19.28 16 14 H 0.14 5.01 7.40 -2.39 -0.02 4.99 16 15 S 2.61 100.26 4.72 -56.49 -0.27 100.00 16 16 O -0.99 -38.57 17.98 -127.65 -2.30 -40.87 16 17 O -0.98 -44.06 16.80 -127.08 -2.14 -46.20 16 18 N -1.10 -44.57 4.92 -172.53 -0.85 -45.42 16 19 C 0.28 13.52 2.66 44.24 0.12 13.63 16 20 H 0.02 1.08 7.15 -2.39 -0.02 1.06 16 21 C -0.15 -7.66 9.29 71.98 0.67 -6.99 16 22 C -0.53 -26.60 8.76 25.60 0.22 -26.38 16 23 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 24 C 0.02 0.93 5.30 84.65 0.45 1.38 16 25 N -0.92 -50.14 11.32 21.45 0.24 -49.90 16 26 Si 0.96 40.48 29.54 68.60 2.03 42.50 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 29 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.08 1.37 7.49 -2.39 -0.02 1.35 16 33 H 0.13 2.64 6.77 -2.91 -0.02 2.62 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.14 2.23 8.05 -2.91 -0.02 2.21 16 37 H 0.11 2.02 8.13 -2.39 -0.02 2.00 16 38 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.09 2.68 7.73 -2.38 -0.02 2.66 16 40 H 0.09 2.28 8.10 -2.39 -0.02 2.26 16 41 H 0.42 15.26 8.79 -96.75 -0.85 14.41 16 42 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.02 1.20 7.42 -2.39 -0.02 1.19 16 44 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 45 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -66.88 373.23 -0.75 -67.63 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.15 Total: 35.94 kcal Atomic # 6 Polarization: -53.64 SS G_CDS: 3.75 Total: -49.90 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -0.61 Total: -95.32 kcal Atomic # 8 Polarization: -95.05 SS G_CDS: -5.80 Total: -100.85 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 100.26 SS G_CDS: -0.27 Total: 100.00 kcal Total: -66.88 -0.75 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363968033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.818 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds