Wall clock time and date at job start Tue Mar 31 2020 22:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81400 * 109.47476 * 2 1 4 4 O 1.42101 * 108.57960 * 65.50575 * 3 2 1 5 5 O 1.42096 * 108.57559 * 294.48581 * 3 2 1 6 6 C 1.81398 * 101.92416 * 179.97438 * 3 2 1 7 7 C 1.52996 * 109.47155 * 180.02562 * 6 3 2 8 8 H 1.09005 * 109.47123 * 304.99924 * 7 6 3 9 9 C 1.53003 * 109.47254 * 184.99736 * 7 6 3 10 10 N 1.46499 * 109.47395 * 64.99800 * 7 6 3 11 11 C 1.34776 * 120.00153 * 204.99964 * 10 7 6 12 12 O 1.21278 * 120.00137 * 0.02562 * 11 10 7 13 13 C 1.50700 * 119.99966 * 180.02562 * 11 10 7 14 14 H 1.09001 * 109.47313 * 299.99881 * 13 11 10 15 15 C 1.50698 * 109.47194 * 60.00005 * 13 11 10 16 16 H 1.07994 * 119.99964 * 33.94740 * 15 13 11 17 17 C 1.37879 * 119.99827 * 213.93875 * 15 13 11 18 18 N 1.31516 * 120.00337 * 6.39596 * 17 15 13 19 19 Si 1.86801 * 119.99672 * 186.38912 * 17 15 13 20 20 H 1.48501 * 109.47114 * 60.00387 * 19 17 15 21 21 H 1.48501 * 109.46888 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47315 * 300.00279 * 19 17 15 23 23 C 1.50699 * 109.47072 * 180.02562 * 13 11 10 24 24 C 1.38240 * 120.00025 * 293.84631 * 23 13 11 25 25 C 1.38230 * 120.00211 * 179.78763 * 24 23 13 26 26 C 1.38238 * 119.99959 * 0.44433 * 25 24 23 27 27 C 1.38236 * 120.00033 * 359.80894 * 26 25 24 28 28 C 1.38235 * 120.00372 * 114.12023 * 23 13 11 29 29 H 1.09000 * 109.47667 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47552 * 300.00605 * 1 2 3 31 31 H 1.09007 * 109.46892 * 60.00025 * 1 2 3 32 32 H 1.09002 * 109.47552 * 239.99395 * 2 1 3 33 33 H 1.09007 * 109.46892 * 119.99975 * 2 1 3 34 34 H 1.08994 * 109.47258 * 59.99576 * 6 3 2 35 35 H 1.09010 * 109.46930 * 299.99767 * 6 3 2 36 36 H 1.08993 * 109.46861 * 299.99942 * 9 7 6 37 37 H 1.09007 * 109.46653 * 59.99899 * 9 7 6 38 38 H 1.09002 * 109.47222 * 179.97438 * 9 7 6 39 39 H 0.97001 * 119.99774 * 24.99726 * 10 7 6 40 40 H 0.96996 * 119.99982 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99493 * 359.97438 * 24 23 13 42 42 H 1.08005 * 120.00083 * 180.26862 * 25 24 23 43 43 H 1.07997 * 119.99756 * 179.83087 * 26 25 24 44 44 H 1.08000 * 120.00287 * 180.02562 * 27 26 25 45 45 H 1.07997 * 119.99889 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3233 1.2257 5 8 1.7593 2.3231 -1.2258 6 6 3.9330 1.4719 0.0008 7 6 4.6281 2.8348 0.0015 8 1 4.2685 3.4265 -0.8403 9 6 6.1400 2.6363 -0.1235 10 7 4.3293 3.5347 1.2533 11 6 4.3798 4.8807 1.3015 12 8 4.6721 5.5125 0.3084 13 6 4.0731 5.6006 2.5894 14 1 3.0570 5.3638 2.9050 15 6 5.0449 5.1615 3.6541 16 1 6.0625 4.9161 3.3884 17 6 4.6350 5.0733 4.9676 18 7 3.3683 5.2494 5.2745 19 14 5.8788 4.7034 6.3113 20 1 6.9174 5.7646 6.3302 21 1 5.1895 4.6613 7.6259 22 1 6.5183 3.3897 6.0460 23 6 4.1986 7.0871 2.3761 24 6 5.4326 7.6433 2.0948 25 6 5.5471 9.0062 1.8948 26 6 4.4292 9.8144 1.9852 27 6 3.1961 9.2590 2.2717 28 6 3.0809 7.8954 2.4674 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 4.2260 0.9146 -0.8889 35 1 4.2252 0.9149 0.8911 36 1 6.4995 2.0446 0.7183 37 1 6.3623 2.1155 -1.0549 38 1 6.6352 3.6073 -0.1234 39 1 4.0952 3.0294 2.0476 40 1 3.0801 5.1877 6.1985 41 1 6.3066 7.0124 2.0282 42 1 6.5104 9.4401 1.6707 43 1 4.5191 10.8796 1.8316 44 1 2.3227 9.8903 2.3419 45 1 2.1176 7.4615 2.6911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411286114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:45 Heat of formation + Delta-G solvation = -92.989276 kcal Electronic energy + Delta-G solvation = -28189.236034 eV Core-core repulsion = 24298.754051 eV Total energy + Delta-G solvation = -3890.481983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.27260 -37.87538 -36.90738 -35.97708 -35.53767 -33.58328 -33.35264 -31.20149 -30.75188 -29.87740 -27.89793 -27.18242 -24.33304 -23.86945 -21.84795 -21.50039 -20.41597 -19.37681 -18.83029 -17.05074 -16.78340 -16.43794 -16.29748 -15.85426 -15.70404 -15.36702 -14.49876 -14.47037 -14.11982 -14.07825 -13.62473 -13.41043 -13.30961 -13.02068 -12.71762 -12.70296 -12.57468 -12.35341 -12.25462 -11.97342 -11.91604 -11.87686 -11.77056 -11.56878 -11.45732 -11.06712 -11.00985 -10.97594 -10.80145 -10.36862 -10.32758 -10.21828 -9.92194 -9.39881 -8.73292 -8.54514 -8.44386 -7.88831 -7.55634 -6.20402 -4.26244 -0.09847 2.43406 2.46023 2.71380 3.23131 3.29496 3.31458 3.57817 3.72849 3.77000 4.02417 4.32349 4.38019 4.46043 4.50697 4.85009 4.89579 4.96170 5.15913 5.20282 5.37034 5.40251 5.46729 5.49306 5.70807 5.76769 5.77568 5.85610 5.95018 6.03461 6.27965 6.34666 6.42086 6.55748 6.66570 6.95428 7.03690 7.14486 7.30553 7.42716 7.50590 7.68082 7.83321 8.02538 8.13432 8.37035 8.77166 9.25313 9.38573 10.88078 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.004204 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.292563 B = 6658.212916 C = 7564.777271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.622 4.622 3 S 2.411 3.589 4 O -0.911 6.911 5 O -0.936 6.936 6 C -0.625 4.625 7 C 0.155 3.845 8 H 0.097 0.903 9 C -0.153 4.153 10 N -0.734 5.734 11 C 0.534 3.466 12 O -0.565 6.565 13 C 0.047 3.953 14 H 0.098 0.902 15 C -0.516 4.516 16 H 0.061 0.939 17 C 0.076 3.924 18 N -0.874 5.874 19 Si 0.897 3.103 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.011 4.011 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.119 4.119 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.267 0.733 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 -11.087 -8.403 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.750 4.750 3 S 2.592 3.408 4 O -0.907 6.907 5 O -0.933 6.933 6 C -0.753 4.753 7 C 0.048 3.952 8 H 0.115 0.885 9 C -0.212 4.212 10 N -0.389 5.389 11 C 0.325 3.675 12 O -0.444 6.444 13 C 0.026 3.974 14 H 0.116 0.884 15 C -0.554 4.554 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.724 3.276 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.013 4.013 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.138 4.138 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.249 0.751 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.742 -9.866 -8.941 13.428 hybrid contribution 1.128 -1.378 1.262 2.183 sum -0.614 -11.244 -7.679 13.630 Atomic orbital electron populations 1.21503 0.90429 1.04600 1.03962 1.30311 1.07651 1.25853 1.11158 1.08482 0.78291 0.77994 0.76070 1.93675 1.80438 1.71962 1.44674 1.93587 1.80967 1.72805 1.45953 1.30692 1.25630 1.06990 1.12037 1.20380 0.96121 0.88173 0.90507 0.88480 1.22112 0.94551 1.03043 1.01493 1.46202 1.72753 1.07806 1.12097 1.21676 0.73623 0.81167 0.91072 1.90581 1.49213 1.66715 1.37861 1.18155 1.02367 0.87413 0.89425 0.88425 1.20598 0.96425 1.47408 0.90939 0.92054 1.24959 0.95180 0.94054 0.98782 1.69888 1.14316 1.47407 1.19350 0.86581 0.81353 0.78917 0.80752 1.19966 1.21128 1.20117 1.20079 0.92161 0.96805 0.92210 1.20819 0.97633 0.93835 0.98008 1.20946 0.97635 0.94274 1.02480 1.20792 0.93364 0.98469 1.04107 1.20904 0.96844 0.95162 1.02058 1.21035 0.98550 0.93336 1.00841 0.90319 0.90533 0.90929 0.85411 0.85021 0.84111 0.84320 0.92065 0.92196 0.91115 0.75140 0.92266 0.87133 0.87648 0.87748 0.87542 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.92 37.15 0.37 -0.84 16 2 C -0.62 -4.63 6.52 37.15 0.24 -4.39 16 3 S 2.41 29.34 4.64 -107.50 -0.50 28.85 16 4 O -0.91 -15.14 16.90 -57.83 -0.98 -16.12 16 5 O -0.94 -14.72 18.10 -57.83 -1.05 -15.77 16 6 C -0.62 -6.15 5.33 37.16 0.20 -5.95 16 7 C 0.15 2.32 2.57 -67.93 -0.17 2.15 16 8 H 0.10 1.61 7.58 -51.93 -0.39 1.22 16 9 C -0.15 -2.03 9.48 37.16 0.35 -1.68 16 10 N -0.73 -13.88 4.05 -53.81 -0.22 -14.10 16 11 C 0.53 12.30 7.01 -10.99 -0.08 12.23 16 12 O -0.57 -13.97 15.08 5.56 0.08 -13.88 16 13 C 0.05 1.18 2.44 -94.08 -0.23 0.95 16 14 H 0.10 2.62 7.00 -51.93 -0.36 2.26 16 15 C -0.52 -13.11 7.46 -34.44 -0.26 -13.37 16 16 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 17 C 0.08 1.95 5.45 -17.82 -0.10 1.85 16 18 N -0.87 -23.63 12.78 55.43 0.71 -22.92 16 19 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C -0.01 -0.28 4.30 -104.62 -0.45 -0.73 16 24 C -0.08 -1.96 8.31 -39.58 -0.33 -2.29 16 25 C -0.14 -2.75 10.05 -39.58 -0.40 -3.14 16 26 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 27 C -0.13 -2.65 10.05 -39.58 -0.40 -3.04 16 28 C -0.12 -2.73 9.67 -39.58 -0.38 -3.12 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.13 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.14 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.41 7.56 8.09 -40.82 -0.33 7.23 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.11 2.55 7.89 -52.49 -0.41 2.14 16 42 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 43 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.11 2.53 7.95 -52.49 -0.42 2.11 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -35.06 391.27 -10.06 -45.13 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -6.96 Total: 12.44 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -2.03 Total: -24.64 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.49 Total: -37.01 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.94 Total: -45.77 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 29.34 SS G_CDS: -0.50 Total: 28.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.06 -10.06 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411286114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.864 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds