Wall clock time and date at job start Tue Mar 31 2020 22:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81400 * 109.47476 * 2 1 4 4 O 1.42101 * 108.57960 * 65.50575 * 3 2 1 5 5 O 1.42096 * 108.57559 * 294.48581 * 3 2 1 6 6 C 1.81398 * 101.92416 * 179.97438 * 3 2 1 7 7 C 1.52996 * 109.47155 * 180.02562 * 6 3 2 8 8 H 1.09005 * 109.47123 * 304.99924 * 7 6 3 9 9 C 1.53003 * 109.47254 * 184.99736 * 7 6 3 10 10 N 1.46499 * 109.47395 * 64.99800 * 7 6 3 11 11 C 1.34776 * 120.00153 * 204.99964 * 10 7 6 12 12 O 1.21278 * 120.00137 * 0.02562 * 11 10 7 13 13 C 1.50700 * 119.99966 * 180.02562 * 11 10 7 14 14 H 1.09001 * 109.47313 * 299.99881 * 13 11 10 15 15 C 1.50698 * 109.47194 * 60.00005 * 13 11 10 16 16 H 1.07994 * 119.99964 * 33.94740 * 15 13 11 17 17 C 1.37879 * 119.99827 * 213.93875 * 15 13 11 18 18 N 1.31516 * 120.00337 * 6.39596 * 17 15 13 19 19 Si 1.86801 * 119.99672 * 186.38912 * 17 15 13 20 20 H 1.48501 * 109.47114 * 60.00387 * 19 17 15 21 21 H 1.48501 * 109.46888 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47315 * 300.00279 * 19 17 15 23 23 C 1.50699 * 109.47072 * 180.02562 * 13 11 10 24 24 C 1.38240 * 120.00025 * 293.84631 * 23 13 11 25 25 C 1.38230 * 120.00211 * 179.78763 * 24 23 13 26 26 C 1.38238 * 119.99959 * 0.44433 * 25 24 23 27 27 C 1.38236 * 120.00033 * 359.80894 * 26 25 24 28 28 C 1.38235 * 120.00372 * 114.12023 * 23 13 11 29 29 H 1.09000 * 109.47667 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47552 * 300.00605 * 1 2 3 31 31 H 1.09007 * 109.46892 * 60.00025 * 1 2 3 32 32 H 1.09002 * 109.47552 * 239.99395 * 2 1 3 33 33 H 1.09007 * 109.46892 * 119.99975 * 2 1 3 34 34 H 1.08994 * 109.47258 * 59.99576 * 6 3 2 35 35 H 1.09010 * 109.46930 * 299.99767 * 6 3 2 36 36 H 1.08993 * 109.46861 * 299.99942 * 9 7 6 37 37 H 1.09007 * 109.46653 * 59.99899 * 9 7 6 38 38 H 1.09002 * 109.47222 * 179.97438 * 9 7 6 39 39 H 0.97001 * 119.99774 * 24.99726 * 10 7 6 40 40 H 0.96996 * 119.99982 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99493 * 359.97438 * 24 23 13 42 42 H 1.08005 * 120.00083 * 180.26862 * 25 24 23 43 43 H 1.07997 * 119.99756 * 179.83087 * 26 25 24 44 44 H 1.08000 * 120.00287 * 180.02562 * 27 26 25 45 45 H 1.07997 * 119.99889 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3233 1.2257 5 8 1.7593 2.3231 -1.2258 6 6 3.9330 1.4719 0.0008 7 6 4.6281 2.8348 0.0015 8 1 4.2685 3.4265 -0.8403 9 6 6.1400 2.6363 -0.1235 10 7 4.3293 3.5347 1.2533 11 6 4.3798 4.8807 1.3015 12 8 4.6721 5.5125 0.3084 13 6 4.0731 5.6006 2.5894 14 1 3.0570 5.3638 2.9050 15 6 5.0449 5.1615 3.6541 16 1 6.0625 4.9161 3.3884 17 6 4.6350 5.0733 4.9676 18 7 3.3683 5.2494 5.2745 19 14 5.8788 4.7034 6.3113 20 1 6.9174 5.7646 6.3302 21 1 5.1895 4.6613 7.6259 22 1 6.5183 3.3897 6.0460 23 6 4.1986 7.0871 2.3761 24 6 5.4326 7.6433 2.0948 25 6 5.5471 9.0062 1.8948 26 6 4.4292 9.8144 1.9852 27 6 3.1961 9.2590 2.2717 28 6 3.0809 7.8954 2.4674 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 4.2260 0.9146 -0.8889 35 1 4.2252 0.9149 0.8911 36 1 6.4995 2.0446 0.7183 37 1 6.3623 2.1155 -1.0549 38 1 6.6352 3.6073 -0.1234 39 1 4.0952 3.0294 2.0476 40 1 3.0801 5.1877 6.1985 41 1 6.3066 7.0124 2.0282 42 1 6.5104 9.4401 1.6707 43 1 4.5191 10.8796 1.8316 44 1 2.3227 9.8903 2.3419 45 1 2.1176 7.4615 2.6911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411286114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:45 Heat of formation + Delta-G solvation = -118.207960 kcal Electronic energy + Delta-G solvation = -28190.329599 eV Core-core repulsion = 24298.754051 eV Total energy + Delta-G solvation = -3891.575548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98370 -39.50227 -37.97478 -37.15573 -36.84531 -35.50746 -34.00016 -32.99840 -32.23860 -31.55922 -29.04217 -28.80340 -25.87231 -24.99283 -23.32352 -23.12155 -21.86650 -21.07725 -19.80613 -18.68321 -18.06457 -17.79366 -17.74456 -17.28711 -16.89780 -16.65310 -16.23992 -15.85302 -15.69443 -15.22955 -15.16531 -14.70326 -14.50346 -14.19423 -14.06066 -13.99418 -13.79626 -13.63316 -13.39698 -13.33815 -13.29925 -13.05728 -12.99523 -12.96889 -12.83882 -12.75969 -12.37019 -12.20161 -12.17084 -11.97201 -11.76699 -11.66315 -11.28750 -11.15815 -10.69256 -10.43164 -9.99731 -9.58385 -9.28302 -8.18342 -6.30608 -0.98472 0.72939 0.78225 1.42712 1.46498 1.53144 1.86368 1.92106 2.40267 2.45384 2.68858 3.08610 3.11758 3.26020 3.44885 3.76998 3.87467 3.99694 4.18501 4.19992 4.28315 4.30747 4.40028 4.41913 4.49439 4.57412 4.62594 4.73494 4.78656 4.84295 4.86473 4.95430 4.99120 5.11116 5.13973 5.26470 5.34859 5.44303 5.63352 5.65367 5.76047 5.81227 5.95450 6.22836 6.38453 6.68032 6.77830 7.35519 7.50169 8.90339 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.004204 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.292563 B = 6658.212916 C = 7564.777271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.585 4.585 3 S 2.381 3.619 4 O -0.976 6.976 5 O -0.989 6.989 6 C -0.606 4.606 7 C 0.139 3.861 8 H 0.072 0.928 9 C -0.147 4.147 10 N -0.725 5.725 11 C 0.529 3.471 12 O -0.591 6.591 13 C 0.046 3.954 14 H 0.063 0.937 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.031 3.969 18 N -0.908 5.908 19 Si 0.958 3.042 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.041 4.041 24 C -0.108 4.108 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.129 4.129 28 C -0.149 4.149 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.193 0.807 35 H 0.174 0.826 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.413 0.587 40 H 0.267 0.733 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.150 0.850 44 H 0.140 0.860 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 -12.984 -8.880 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.718 4.718 3 S 2.569 3.431 4 O -0.973 6.973 5 O -0.986 6.986 6 C -0.736 4.736 7 C 0.033 3.967 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.378 5.378 11 C 0.318 3.682 12 O -0.472 6.472 13 C 0.025 3.975 14 H 0.081 0.919 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.171 4.171 18 N -0.544 5.544 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.184 1.184 23 C -0.042 4.042 24 C -0.127 4.127 25 C -0.151 4.151 26 C -0.160 4.160 27 C -0.146 4.146 28 C -0.167 4.167 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.188 0.812 33 H 0.183 0.817 34 H 0.211 0.789 35 H 0.192 0.808 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.157 0.843 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.084 -11.750 -9.431 15.067 hybrid contribution 0.560 -0.841 1.312 1.656 sum 0.476 -12.591 -8.119 14.989 Atomic orbital electron populations 1.21704 0.91194 1.06234 1.03119 1.30009 1.06800 1.20026 1.14919 1.08843 0.79608 0.80584 0.74018 1.93609 1.81939 1.75417 1.46366 1.93519 1.82222 1.75901 1.47000 1.30552 1.22185 1.04516 1.16375 1.20697 0.98200 0.90255 0.87514 0.91016 1.22082 0.92420 1.01931 1.04207 1.46148 1.71247 1.06627 1.13776 1.21402 0.73880 0.82703 0.90170 1.90536 1.50772 1.67638 1.38261 1.18048 1.00250 0.88765 0.90411 0.91945 1.20688 0.96150 1.47110 0.91429 0.92364 1.25692 0.96705 0.93987 1.00726 1.70030 1.16049 1.48788 1.19575 0.85608 0.78923 0.79204 0.77945 1.20280 1.20952 1.18390 1.20178 0.93420 0.96629 0.94000 1.20855 0.96648 0.95421 0.99744 1.21356 0.99787 0.93073 1.00889 1.21290 0.92187 1.00576 1.01929 1.21295 0.98849 0.94053 1.00449 1.21157 0.97812 0.95098 1.02656 0.87174 0.91994 0.91606 0.81228 0.81704 0.78909 0.80820 0.90548 0.88323 0.94523 0.75024 0.92388 0.88328 0.84282 0.83247 0.84253 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.92 71.98 0.71 -1.69 16 2 C -0.58 -6.62 6.52 71.98 0.47 -6.15 16 3 S 2.38 57.88 4.64 -56.49 -0.26 57.62 16 4 O -0.98 -34.84 16.90 -127.37 -2.15 -37.00 16 5 O -0.99 -32.61 18.10 -127.37 -2.31 -34.92 16 6 C -0.61 -10.33 5.33 71.98 0.38 -9.95 16 7 C 0.14 4.15 2.57 44.99 0.12 4.26 16 8 H 0.07 2.51 7.58 -2.38 -0.02 2.49 16 9 C -0.15 -3.71 9.48 71.98 0.68 -3.03 16 10 N -0.72 -28.80 4.05 -442.54 -1.79 -30.59 16 11 C 0.53 26.12 7.01 87.66 0.61 26.73 16 12 O -0.59 -31.24 15.08 -3.02 -0.05 -31.29 16 13 C 0.05 2.48 2.44 -13.03 -0.03 2.45 16 14 H 0.06 3.70 7.00 -2.39 -0.02 3.69 16 15 C -0.52 -27.48 7.46 25.60 0.19 -27.29 16 16 H 0.06 3.06 7.82 -2.91 -0.02 3.03 16 17 C 0.03 1.63 5.45 84.65 0.46 2.09 16 18 N -0.91 -51.39 12.78 21.45 0.27 -51.11 16 19 Si 0.96 41.88 29.54 68.60 2.03 43.91 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 23 C -0.04 -2.13 4.30 -19.86 -0.09 -2.21 16 24 C -0.11 -5.17 8.31 22.27 0.19 -4.98 16 25 C -0.13 -5.26 10.05 22.27 0.22 -5.04 16 26 C -0.14 -5.14 10.05 22.27 0.22 -4.91 16 27 C -0.13 -5.10 10.05 22.27 0.22 -4.87 16 28 C -0.15 -7.18 9.67 22.27 0.22 -6.97 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.17 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.17 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.19 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.17 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.41 15.97 8.09 -92.71 -0.75 15.22 16 40 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.10 4.79 7.89 -2.91 -0.02 4.76 16 42 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 44 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 45 H 0.10 4.91 7.95 -2.91 -0.02 4.89 16 Total: -1.00 -85.62 391.27 0.56 -85.06 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: 0.23 Total: 39.88 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 4.59 Total: -41.56 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.52 Total: -81.71 kcal Atomic # 8 Polarization: -98.70 SS G_CDS: -4.50 Total: -103.20 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.26 Total: 57.62 kcal Total: -85.62 0.56 -85.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411286114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.143 kcal (2) G-P(sol) polarization free energy of solvation -85.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds