Wall clock time and date at job start Tue Mar 31 2020 23:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00008 * 2 1 4 4 C 1.52999 * 110.43307 * 111.60473 * 3 2 1 5 5 O 1.42901 * 109.47064 * 305.70256 * 4 3 2 6 6 C 1.54890 * 110.48817 * 348.92238 * 3 2 1 7 7 C 1.54887 * 102.74607 * 279.26311 * 6 3 2 8 8 C 1.54264 * 104.19690 * 322.05488 * 7 6 3 9 9 C 1.53875 * 106.59726 * 23.61259 * 8 7 6 10 10 S 1.65609 * 119.99993 * 180.02562 * 2 1 3 11 11 O 1.42102 * 106.39923 * 329.33207 * 10 2 1 12 12 O 1.42091 * 106.39761 * 196.41376 * 10 2 1 13 13 C 1.76199 * 107.21935 * 82.87351 * 10 2 1 14 14 C 1.38634 * 119.74987 * 276.88161 * 13 10 2 15 15 C 1.37616 * 120.25171 * 180.30359 * 14 13 10 16 16 C 1.40723 * 119.74011 * 359.42262 * 15 14 13 17 17 C 1.41394 * 120.24397 * 180.29798 * 16 15 14 18 18 H 1.07994 * 119.99821 * 208.10372 * 17 16 15 19 19 C 1.39947 * 119.99842 * 28.10385 * 17 16 15 20 20 N 1.30822 * 120.00212 * 8.82790 * 19 17 16 21 21 Si 1.86808 * 119.99943 * 188.82536 * 19 17 16 22 22 H 1.48498 * 109.47048 * 59.99921 * 21 19 17 23 23 H 1.48498 * 109.46836 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46670 * 299.99873 * 21 19 17 25 25 C 1.40710 * 119.51149 * 0.27875 * 16 15 14 26 26 C 1.37622 * 119.74694 * 359.97438 * 25 16 15 27 27 H 1.09008 * 109.46786 * 269.99359 * 1 2 3 28 28 H 1.08992 * 109.47545 * 29.99117 * 1 2 3 29 29 H 1.09005 * 109.47250 * 149.99835 * 1 2 3 30 30 H 1.09005 * 109.46909 * 65.69984 * 4 3 2 31 31 H 1.08997 * 109.47447 * 185.70001 * 4 3 2 32 32 H 0.96707 * 113.99804 * 179.97438 * 5 4 3 33 33 H 1.09001 * 110.75058 * 37.57270 * 6 3 2 34 34 H 1.09000 * 110.75623 * 160.94550 * 6 3 2 35 35 H 1.09009 * 110.48108 * 203.37684 * 7 6 3 36 36 H 1.09000 * 110.48804 * 80.73868 * 7 6 3 37 37 H 1.09003 * 110.03287 * 264.32983 * 8 7 6 38 38 H 1.08998 * 110.03349 * 142.89791 * 8 7 6 39 39 H 1.08999 * 110.03245 * 240.71274 * 9 8 7 40 40 H 1.09004 * 110.03058 * 119.28525 * 9 8 7 41 41 H 1.08007 * 119.87738 * 0.02562 * 14 13 10 42 42 H 1.08000 * 120.13113 * 179.69749 * 15 14 13 43 43 H 0.96995 * 120.00482 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.12620 * 180.02562 * 25 16 15 45 45 H 1.07999 * 119.87353 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.9217 1.4673 1.3330 5 8 1.9854 1.3492 2.4060 6 6 1.2354 2.4502 -0.2788 7 6 1.0850 2.4121 -1.8199 8 6 2.4931 2.0401 -2.3283 9 6 3.2005 1.3131 -1.1712 10 16 2.2930 -1.4342 -0.0006 11 8 1.4782 -2.3682 0.6943 12 8 3.6260 -1.1280 0.3847 13 6 2.3730 -1.9896 -1.6709 14 6 1.3039 -2.6827 -2.2173 15 6 1.3579 -3.1266 -3.5188 16 6 2.4990 -2.8640 -4.2992 17 6 2.5632 -3.3096 -5.6395 18 1 3.5197 -3.5292 -6.0903 19 6 1.3873 -3.4663 -6.3819 20 7 0.2481 -3.0396 -5.9006 21 14 1.4442 -4.2846 -8.0603 22 1 1.9664 -5.6676 -7.9192 23 1 0.0761 -4.3288 -8.6360 24 1 2.3354 -3.5083 -8.9593 25 6 3.5756 -2.1541 -3.7360 26 6 3.5018 -1.7243 -2.4307 27 1 -0.3633 -0.0001 1.0278 28 1 -0.3634 0.8900 -0.5136 29 1 -0.3634 -0.8900 -0.5139 30 1 3.6968 0.7087 1.4419 31 1 3.3768 2.4575 1.3553 32 1 2.3760 1.4637 3.2833 33 1 0.2734 2.2878 0.2073 34 1 1.6779 3.3929 0.0430 35 1 0.7888 3.3904 -2.1985 36 1 0.3603 1.6528 -2.1138 37 1 3.0442 2.9420 -2.5950 38 1 2.4159 1.3800 -3.1923 39 1 4.0947 1.8621 -0.8764 40 1 3.4664 0.3002 -1.4737 41 1 0.4271 -2.8789 -1.6180 42 1 0.5259 -3.6706 -3.9410 43 1 -0.5670 -3.1485 -6.4149 44 1 4.4560 -1.9467 -4.3261 45 1 4.3267 -1.1790 -1.9965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414319460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:59 Heat of formation + Delta-G solvation = -104.778545 kcal Electronic energy + Delta-G solvation = -29384.899862 eV Core-core repulsion = 25493.906658 eV Total energy + Delta-G solvation = -3890.993204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.45790 -37.60334 -36.51370 -36.06948 -35.07339 -34.01343 -33.69468 -30.26395 -29.93604 -29.49674 -28.57154 -25.80932 -25.22642 -24.22676 -21.49911 -21.20254 -20.40932 -20.12314 -17.96743 -17.63924 -17.20739 -16.81005 -16.36197 -16.13022 -15.51081 -15.31241 -14.69927 -14.52788 -14.18473 -13.70408 -13.43108 -13.34308 -13.29034 -13.01212 -12.48438 -12.39890 -12.22605 -12.01784 -11.86930 -11.59260 -11.41546 -11.34424 -11.30907 -11.24958 -11.19561 -11.01927 -10.92128 -10.88314 -10.75908 -10.46397 -10.37339 -10.22929 -9.76658 -9.69681 -9.57618 -9.47057 -8.51600 -7.90196 -7.68314 -7.05229 -4.80781 1.25487 2.25117 2.88683 2.89631 2.91840 2.93950 3.62579 3.68392 4.16403 4.28943 4.55770 4.71117 4.73691 4.98378 5.10543 5.25484 5.38021 5.39974 5.52073 5.55344 5.59406 5.66249 5.79928 5.88939 5.92492 6.01086 6.01719 6.05283 6.06996 6.11907 6.20590 6.29902 6.38663 6.56133 6.59123 6.66728 6.71787 6.89829 7.03998 7.12683 7.34598 7.40807 7.63780 7.70995 7.78381 7.98179 8.33989 8.53065 8.65200 9.83712 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018031 B = 0.003917 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.513695 B = 7147.310822 C = 7602.448607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.984 5.984 3 C 0.191 3.809 4 C 0.052 3.948 5 O -0.565 6.565 6 C -0.117 4.117 7 C -0.126 4.126 8 C -0.120 4.120 9 C -0.144 4.144 10 S 2.694 3.306 11 O -0.982 6.982 12 O -0.985 6.985 13 C -0.782 4.782 14 C -0.018 4.018 15 C -0.176 4.176 16 C 0.140 3.860 17 C -0.438 4.438 18 H 0.085 0.915 19 C 0.070 3.930 20 N -0.777 5.777 21 Si 0.920 3.080 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.262 1.262 25 C -0.233 4.233 26 C -0.003 4.003 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.373 0.627 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.128 0.872 43 H 0.288 0.712 44 H 0.100 0.900 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 10.264 6.325 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.819 5.819 3 C 0.102 3.898 4 C -0.027 4.027 5 O -0.370 6.370 6 C -0.156 4.156 7 C -0.164 4.164 8 C -0.157 4.157 9 C -0.183 4.183 10 S 2.794 3.206 11 O -0.973 6.973 12 O -0.976 6.976 13 C -0.877 4.877 14 C -0.038 4.038 15 C -0.196 4.196 16 C 0.136 3.864 17 C -0.466 4.466 18 H 0.103 0.897 19 C -0.150 4.150 20 N -0.401 5.401 21 Si 0.743 3.257 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.187 1.187 25 C -0.254 4.254 26 C -0.023 4.023 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.219 0.781 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.146 0.854 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.017 9.798 6.549 11.785 hybrid contribution 0.214 -0.142 -1.141 1.170 sum 0.198 9.656 5.408 11.069 Atomic orbital electron populations 1.21490 0.79218 1.02851 1.01603 1.57431 1.14584 1.19846 1.90026 1.20845 0.91817 0.84640 0.92477 1.23002 0.92074 1.00807 0.86848 1.86506 1.37843 1.95792 1.16811 1.22771 0.99949 0.96548 0.96301 1.22441 0.97801 1.01253 0.94887 1.22058 0.95448 0.99873 0.98349 1.22802 0.97808 1.03361 0.94321 1.01344 0.72362 0.71717 0.75179 1.93479 1.70023 1.60800 1.72963 1.93409 1.36626 1.84300 1.83277 1.29346 1.05561 1.28678 1.24124 1.20258 0.94374 0.93904 0.95274 1.21467 1.00830 1.04941 0.92363 1.17862 0.90697 0.85484 0.92317 1.19883 0.94124 1.36342 0.96274 0.89674 1.26094 0.94675 0.93139 1.01106 1.69767 0.99965 1.32278 1.38046 0.86155 0.78613 0.80589 0.80296 1.18489 1.19945 1.18651 1.21097 1.01116 1.07559 0.95633 1.20162 0.93943 0.94659 0.93550 0.92780 0.90639 0.91576 0.90441 0.93110 0.78108 0.90016 0.90795 0.91828 0.90905 0.92009 0.90872 0.90483 0.89675 0.88249 0.85428 0.90121 0.88197 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 9.30 59.85 0.56 1.97 16 2 N -0.98 -16.53 2.86 -106.06 -0.30 -16.83 16 3 C 0.19 2.78 0.48 -130.16 -0.06 2.71 16 4 C 0.05 0.70 5.71 37.16 0.21 0.91 16 5 O -0.57 -7.40 13.32 -35.23 -0.47 -7.87 16 6 C -0.12 -1.42 5.20 -24.74 -0.13 -1.55 16 7 C -0.13 -1.56 6.48 -25.07 -0.16 -1.73 16 8 C -0.12 -1.62 6.80 -25.61 -0.17 -1.80 16 9 C -0.14 -2.13 5.57 -25.61 -0.14 -2.27 16 10 S 2.69 54.76 4.83 -107.50 -0.52 54.24 16 11 O -0.98 -22.44 16.78 -57.17 -0.96 -23.40 16 12 O -0.99 -20.43 13.01 -57.17 -0.74 -21.18 16 13 C -0.78 -17.34 5.75 -39.29 -0.23 -17.56 16 14 C -0.02 -0.42 9.49 -39.66 -0.38 -0.79 16 15 C -0.18 -4.38 8.67 -38.87 -0.34 -4.71 16 16 C 0.14 3.51 5.57 -106.82 -0.59 2.92 16 17 C -0.44 -10.70 9.07 -37.74 -0.34 -11.04 16 18 H 0.09 1.97 7.86 -52.49 -0.41 1.55 16 19 C 0.07 1.61 5.29 -17.34 -0.09 1.52 16 20 N -0.78 -18.37 10.70 55.55 0.59 -17.78 16 21 Si 0.92 17.10 29.57 -169.99 -5.03 12.07 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.23 -5.43 9.80 -38.87 -0.38 -5.81 16 26 C 0.00 -0.07 8.02 -39.66 -0.32 -0.39 16 27 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.08 0.96 4.33 -51.93 -0.23 0.74 16 29 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 30 H 0.08 1.18 5.97 -51.93 -0.31 0.87 16 31 H 0.05 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.37 3.17 9.12 45.56 0.42 3.58 16 33 H 0.08 0.98 6.03 -51.93 -0.31 0.66 16 34 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 35 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 40 H 0.08 1.45 2.66 -51.93 -0.14 1.32 16 41 H 0.10 2.15 7.77 -52.48 -0.41 1.75 16 42 H 0.13 3.24 6.10 -52.49 -0.32 2.92 16 43 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 44 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 45 H 0.11 2.14 6.25 -52.49 -0.33 1.81 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -29.86 357.28 -9.91 -39.76 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -5.30 Total: 13.21 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: -2.57 Total: -37.62 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.29 Total: -34.61 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -2.17 Total: -52.45 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.52 Total: 54.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.86 -9.91 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414319460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.015 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds