Wall clock time and date at job start Tue Mar 31 2020 22:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46905 * 109.47028 * 64.99820 * 4 2 1 6 6 C 1.47472 * 111.00476 * 265.97517 * 5 4 2 7 7 C 1.53508 * 87.93380 * 221.29519 * 6 5 4 8 8 O 1.42900 * 114.17141 * 272.37416 * 7 6 5 9 9 C 1.50696 * 114.17103 * 139.66898 * 7 6 5 10 10 H 1.08004 * 120.00430 * 266.15635 * 9 7 6 11 11 C 1.37886 * 120.00209 * 86.16059 * 9 7 6 12 12 N 1.31517 * 119.99427 * 359.97438 * 11 9 7 13 13 Si 1.86794 * 120.00053 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47483 * 60.00112 * 13 11 9 15 15 H 1.48500 * 109.46832 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47267 * 299.99654 * 13 11 9 17 17 C 1.47478 * 111.00174 * 169.99782 * 5 4 2 18 18 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 19 19 C 1.38232 * 120.00143 * 59.72224 * 18 2 1 20 20 C 1.38231 * 120.00114 * 179.81162 * 19 18 2 21 21 C 1.38236 * 119.99993 * 0.42040 * 20 19 18 22 22 S 1.76198 * 120.00142 * 179.78746 * 21 20 19 23 23 C 1.81403 * 104.45087 * 270.02315 * 22 21 20 24 24 O 1.42102 * 104.27778 * 26.09807 * 22 21 20 25 25 O 1.42097 * 104.27778 * 153.95129 * 22 21 20 26 26 C 1.38239 * 120.00119 * 359.81528 * 21 20 19 27 27 C 1.38233 * 120.00058 * 239.99939 * 18 2 1 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 1.09001 * 113.47571 * 336.06257 * 6 5 4 34 34 H 1.09006 * 113.47827 * 106.52637 * 6 5 4 35 35 H 0.96697 * 114.00114 * 273.84113 * 8 7 6 36 36 H 0.97003 * 119.99243 * 180.02562 * 12 11 9 37 37 H 1.08994 * 113.47980 * 253.47171 * 17 5 4 38 38 H 1.09000 * 113.47151 * 23.94328 * 17 5 4 39 39 H 1.08002 * 119.99951 * 359.97438 * 19 18 2 40 40 H 1.08002 * 120.00399 * 180.20745 * 20 19 18 41 41 H 1.08998 * 109.46603 * 60.00085 * 23 22 21 42 42 H 1.09004 * 109.46804 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47235 * 300.00342 * 23 22 21 44 44 H 1.07988 * 120.00208 * 179.97438 * 26 21 20 45 45 H 1.08004 * 119.99547 * 359.97438 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6514 0.0373 -2.4456 6 6 0.3813 -0.4658 -3.0011 7 6 0.9957 -0.3110 -4.3993 8 8 0.8211 0.9852 -4.9749 9 6 0.6651 -1.4355 -5.3465 10 1 1.3403 -2.2723 -5.4481 11 6 -0.4995 -1.3960 -6.0838 12 7 -1.3219 -0.3772 -5.9598 13 14 -0.9089 -2.7895 -7.2584 14 1 -1.0069 -4.0629 -6.5009 15 1 -2.2059 -2.5098 -7.9253 16 1 0.1603 -2.9039 -8.2826 17 6 2.3221 -0.4916 -3.6479 18 6 2.0324 -0.7105 1.2305 19 6 1.6937 -2.0322 1.4521 20 6 2.1577 -2.6850 2.5788 21 6 2.9532 -2.0135 3.4883 22 16 3.5401 -2.8439 4.9272 23 6 2.2569 -2.5490 6.1750 24 8 3.5672 -4.2148 4.5541 25 8 4.7346 -2.1536 5.2676 26 6 3.2879 -0.6903 3.2691 27 6 2.8271 -0.0387 2.1404 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 0.1693 -1.5006 -2.7321 34 1 -0.4643 0.1985 -2.8224 35 1 -0.0151 1.0963 -5.4476 36 1 -2.1413 -0.3497 -6.4782 37 1 3.1214 0.1508 -4.0173 38 1 2.6281 -1.5333 -3.5514 39 1 1.0688 -2.5556 0.7437 40 1 1.8959 -3.7187 2.7503 41 1 1.3096 -2.9599 5.8260 42 1 2.5409 -3.0328 7.1096 43 1 2.1494 -1.4769 6.3393 44 1 3.9090 -0.1656 3.9798 45 1 3.0883 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434525411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:31 Heat of formation + Delta-G solvation = -56.479152 kcal Electronic energy + Delta-G solvation = -27019.085364 eV Core-core repulsion = 23130.186579 eV Total energy + Delta-G solvation = -3888.898786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00887 -39.05573 -37.39546 -36.24564 -35.51031 -33.75554 -32.08365 -31.28101 -30.29990 -29.77161 -28.16865 -26.05333 -24.88187 -24.10220 -23.12329 -22.14378 -20.03727 -19.30773 -18.66171 -18.07490 -17.27157 -16.53238 -16.39083 -15.89143 -15.37453 -15.07859 -14.97177 -14.60943 -14.50597 -14.19424 -13.86704 -13.73968 -13.62668 -13.58347 -13.22294 -12.92940 -12.55262 -12.40928 -12.37630 -12.27380 -11.97650 -11.81173 -11.58605 -11.48632 -11.42411 -11.25333 -11.16832 -10.94340 -10.77176 -10.59683 -10.44096 -10.22845 -9.96705 -9.33342 -9.24659 -9.20427 -8.68543 -8.23380 -7.92544 -6.30962 -4.40504 -0.26777 0.62842 1.11704 2.56037 3.18034 3.20585 3.23731 3.26295 3.65362 3.78441 4.21293 4.34705 4.40136 4.47268 4.62844 4.68791 4.90101 4.95572 5.14116 5.14462 5.19696 5.21004 5.28476 5.41902 5.62910 5.69982 5.79747 5.81158 5.86517 5.89926 5.99205 6.06710 6.08456 6.19116 6.30087 6.35416 6.39341 6.52791 6.64589 6.68638 7.01159 7.10876 7.31442 7.72664 7.90625 7.98650 8.61411 9.29650 9.64734 10.74982 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.002205 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.635424 B =12697.102140 C =13208.930295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 H 0.088 0.912 4 C 0.027 3.973 5 N -0.470 5.470 6 C -0.018 4.018 7 C 0.247 3.753 8 O -0.570 6.570 9 C -0.535 4.535 10 H 0.065 0.935 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.274 1.274 17 C 0.003 3.997 18 C -0.009 4.009 19 C -0.135 4.135 20 C -0.023 4.023 21 C -0.671 4.671 22 S 2.502 3.498 23 C -0.651 4.651 24 O -0.940 6.940 25 O -0.941 6.941 26 C -0.023 4.023 27 C -0.138 4.138 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.390 0.610 36 H 0.272 0.728 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -2.094 22.330 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 H 0.107 0.893 4 C -0.103 4.103 5 N -0.192 5.192 6 C -0.148 4.148 7 C 0.205 3.795 8 O -0.383 6.383 9 C -0.573 4.573 10 H 0.083 0.917 11 C -0.131 4.131 12 N -0.539 5.539 13 Si 0.732 3.268 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.125 4.125 18 C -0.010 4.010 19 C -0.154 4.154 20 C -0.042 4.042 21 C -0.758 4.758 22 S 2.683 3.317 23 C -0.800 4.800 24 O -0.937 6.937 25 O -0.938 6.938 26 C -0.042 4.042 27 C -0.157 4.157 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.461 -1.676 22.824 23.316 hybrid contribution -1.643 -1.280 -1.083 2.348 sum 2.818 -2.956 21.741 22.121 Atomic orbital electron populations 1.21905 0.93576 1.02025 1.02596 1.20251 0.96723 0.99736 0.90408 0.89319 1.22689 0.99882 0.95607 0.92077 1.68846 1.06067 1.44268 1.00004 1.24773 0.92973 0.97481 0.99532 1.19360 0.88989 0.82993 0.88173 1.86031 1.46035 1.32159 1.74037 1.21547 1.05871 1.05638 1.24271 0.91662 1.25064 0.95442 0.96329 0.96285 1.69286 1.12394 1.30475 1.41738 0.86452 0.77739 0.81844 0.80814 1.20064 1.20986 1.19917 1.24054 0.99680 0.97767 0.91031 1.20447 0.92039 0.93795 0.94681 1.21227 1.01413 0.94726 0.98056 1.20911 0.91719 0.99100 0.92429 1.30361 1.16594 1.07146 1.21714 1.05023 0.76197 0.74666 0.75862 1.30232 1.19479 1.12467 1.17857 1.93587 1.86511 1.31824 1.81772 1.93579 1.41319 1.74986 1.83907 1.20893 0.94343 0.91993 0.96996 1.21257 0.99096 1.00720 0.94657 0.90365 0.93210 0.92856 0.91831 0.93881 0.92399 0.91240 0.75434 0.91758 0.91092 0.91903 0.84927 0.84277 0.84979 0.85146 0.85008 0.84300 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.38 37.16 0.31 -1.62 16 2 C -0.05 -0.71 2.77 -91.77 -0.25 -0.96 16 3 H 0.09 1.21 7.88 -51.93 -0.41 0.80 16 4 C 0.03 0.43 4.13 -3.82 -0.02 0.41 16 5 N -0.47 -9.28 6.15 -244.65 -1.51 -10.79 16 6 C -0.02 -0.40 5.58 -7.55 -0.04 -0.44 16 7 C 0.25 6.10 1.57 -91.25 -0.14 5.96 16 8 O -0.57 -15.22 13.54 -35.23 -0.48 -15.70 16 9 C -0.54 -13.98 8.69 -34.44 -0.30 -14.28 16 10 H 0.07 1.67 7.81 -52.48 -0.41 1.26 16 11 C 0.07 1.83 5.40 -17.82 -0.10 1.73 16 12 N -0.90 -23.59 11.02 55.43 0.61 -22.98 16 13 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 17 C 0.00 0.07 7.10 -7.55 -0.05 0.02 16 18 C -0.01 -0.11 4.78 -104.62 -0.50 -0.61 16 19 C -0.14 -1.54 8.76 -39.59 -0.35 -1.89 16 20 C -0.02 -0.23 9.47 -39.58 -0.37 -0.61 16 21 C -0.67 -6.43 5.66 -39.58 -0.22 -6.65 16 22 S 2.50 20.02 5.80 -107.50 -0.62 19.39 16 23 C -0.65 -2.40 10.80 101.05 1.09 -1.31 16 24 O -0.94 -10.66 17.13 -57.54 -0.99 -11.65 16 25 O -0.94 -10.43 17.13 -57.54 -0.99 -11.42 16 26 C -0.02 -0.23 9.47 -39.58 -0.37 -0.60 16 27 C -0.14 -1.47 9.67 -39.58 -0.38 -1.86 16 28 H 0.08 1.23 5.86 -51.93 -0.30 0.92 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.69 7.37 -51.93 -0.38 0.30 16 31 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.04 0.69 6.75 -51.93 -0.35 0.34 16 33 H 0.06 1.25 7.37 -51.93 -0.38 0.87 16 34 H 0.07 1.58 7.12 -51.93 -0.37 1.21 16 35 H 0.39 10.57 6.34 45.56 0.29 10.86 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.06 1.27 7.87 -51.93 -0.41 0.86 16 39 H 0.13 1.43 7.16 -52.49 -0.38 1.06 16 40 H 0.14 1.18 7.57 -52.49 -0.40 0.78 16 41 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 43 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 44 H 0.14 1.07 7.57 -52.49 -0.40 0.67 16 45 H 0.13 1.19 7.95 -52.48 -0.42 0.78 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -32.63 375.56 -11.02 -43.65 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.98 Total: 11.51 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -1.71 Total: -22.70 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: -0.89 Total: -33.77 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -2.45 Total: -38.77 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 20.02 SS G_CDS: -0.62 Total: 19.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.63 -11.02 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434525411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.833 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds