Wall clock time and date at job start Tue Mar 31 2020 22:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47410 * 2 1 4 4 C 1.52996 * 109.47421 * 239.99915 * 2 1 3 5 5 S 1.81400 * 109.46972 * 65.00340 * 4 2 1 6 6 O 1.42103 * 110.54113 * 291.62479 * 5 4 2 7 7 O 1.42091 * 110.54430 * 68.37642 * 5 4 2 8 8 N 1.65606 * 104.44891 * 180.02562 * 5 4 2 9 9 C 1.46496 * 120.00346 * 64.99547 * 8 5 4 10 10 C 1.50698 * 109.47021 * 165.00165 * 9 8 5 11 11 C 1.38330 * 119.96333 * 269.72425 * 10 9 8 12 12 C 1.38279 * 120.13397 * 179.76666 * 11 10 9 13 13 C 1.38116 * 120.07395 * 0.51320 * 12 11 10 14 14 C 1.38862 * 119.92722 * 359.74385 * 13 12 11 15 15 O 1.35748 * 120.06957 * 179.97438 * 14 13 12 16 16 C 1.34835 * 117.00015 * 354.48104 * 15 14 13 17 17 H 1.08002 * 119.99742 * 5.06317 * 16 15 14 18 18 C 1.38653 * 119.99862 * 185.05836 * 16 15 14 19 19 N 1.31554 * 120.00415 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99646 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47261 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47235 * 120.00181 * 20 18 16 23 23 H 1.48511 * 109.46958 * 239.99939 * 20 18 16 24 24 C 1.38078 * 119.96646 * 90.00362 * 10 9 8 25 25 C 1.53001 * 109.47093 * 120.00081 * 2 1 3 26 26 C 1.52995 * 117.50173 * 180.02562 * 25 2 1 27 27 C 1.52999 * 60.03214 * 107.47733 * 26 25 2 28 28 H 1.09001 * 109.47296 * 299.99934 * 1 2 3 29 29 H 1.09005 * 109.46766 * 59.99771 * 1 2 3 30 30 H 1.08998 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47498 * 185.00179 * 4 2 1 32 32 H 1.08997 * 109.47387 * 305.00013 * 4 2 1 33 33 H 0.97008 * 119.99305 * 245.00014 * 8 5 4 34 34 H 1.08999 * 109.47437 * 285.00343 * 9 8 5 35 35 H 1.09005 * 109.47002 * 45.00256 * 9 8 5 36 36 H 1.07995 * 119.93399 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.96229 * 180.25699 * 12 11 10 38 38 H 1.07998 * 120.04150 * 179.76420 * 13 12 11 39 39 H 0.97003 * 119.99898 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.03583 * 359.95394 * 24 10 9 41 41 H 1.09006 * 115.55903 * 34.30836 * 25 2 1 42 42 H 1.08999 * 117.50199 * 214.98224 * 26 25 2 43 43 H 1.09005 * 117.50225 * 359.97438 * 26 25 2 44 44 H 1.08998 * 117.49457 * 107.50445 * 27 26 25 45 45 H 1.08997 * 117.49658 * 252.51441 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5602 0.2157 -2.7265 6 8 0.1521 0.1683 -2.9115 7 8 2.2660 1.4474 -2.7869 8 7 2.1673 -0.6659 -3.9902 9 6 1.6503 -2.0096 -4.2612 10 6 2.0784 -2.4440 -5.6392 11 6 1.2736 -2.1711 -6.7307 12 6 1.6652 -2.5639 -7.9974 13 6 2.8567 -3.2394 -8.1752 14 6 3.6643 -3.5194 -7.0808 15 8 4.8357 -4.1836 -7.2521 16 6 5.1029 -4.6439 -8.4910 17 1 4.4393 -4.4074 -9.3097 18 6 6.2296 -5.4206 -8.7139 19 7 7.0377 -5.7089 -7.7167 20 14 6.6001 -6.0575 -10.4305 21 1 5.5447 -5.5969 -11.3679 22 1 7.9189 -5.5406 -10.8763 23 1 6.6311 -7.5422 -10.4115 24 6 3.2707 -3.1190 -5.8103 25 6 2.0399 -0.7213 1.2492 26 6 3.5549 -0.8276 1.4346 27 6 2.7420 0.1231 2.3156 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 2.8654 -0.2926 -4.5508 34 1 2.0445 -2.7066 -3.5217 35 1 0.5618 -1.9981 -4.2056 36 1 0.3395 -1.6467 -6.5939 37 1 1.0367 -2.3457 -8.8482 38 1 3.1602 -3.5492 -9.1643 39 1 7.8257 -6.2526 -7.8727 40 1 3.8968 -3.3350 -4.9573 41 1 1.4309 -1.5584 1.5906 42 1 3.9429 -1.7349 1.8976 43 1 4.1884 -0.3841 0.6664 44 1 2.5952 -0.1588 3.3583 45 1 2.8404 1.1921 2.1268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434550481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:50 Heat of formation + Delta-G solvation = -60.424062 kcal Electronic energy + Delta-G solvation = -26574.731602 eV Core-core repulsion = 22685.661752 eV Total energy + Delta-G solvation = -3889.069850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.19868 -38.62721 -37.27103 -36.97592 -36.05800 -34.81252 -33.86692 -32.34398 -30.48378 -29.07451 -27.98691 -25.78843 -24.95762 -23.78273 -22.65903 -21.73074 -20.93898 -20.50198 -19.35503 -18.09869 -17.59623 -17.14305 -16.61999 -16.31982 -15.89026 -15.23988 -14.97285 -14.89390 -14.66567 -14.45453 -14.31006 -13.88633 -13.69283 -13.52770 -13.08702 -12.90410 -12.75309 -12.42810 -12.27652 -12.10674 -12.05931 -12.00306 -11.91108 -11.76893 -11.70582 -11.51133 -11.34429 -10.91359 -10.84902 -10.77433 -10.71725 -10.49121 -10.46302 -10.33665 -9.51830 -9.38678 -8.91012 -8.25843 -7.33505 -6.51065 -4.10319 0.13141 1.90461 2.26653 2.75908 3.08762 3.10340 3.15734 3.33961 3.67389 3.91166 4.00566 4.21072 4.26893 4.43349 4.48978 4.62617 4.73653 4.81046 4.86973 5.00927 5.03097 5.11956 5.18856 5.25853 5.32940 5.33684 5.49571 5.59478 5.61653 5.66230 5.69898 5.77173 5.80121 5.83806 5.90781 5.97213 6.08577 6.23707 6.54806 6.80088 6.93554 7.01853 7.16948 7.27879 7.34578 7.70474 7.93525 8.94850 9.63258 10.66863 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.002343 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.942874 B =11947.917849 C =13152.626055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.047 4.047 3 H 0.083 0.917 4 C -0.627 4.627 5 S 2.610 3.390 6 O -0.954 6.954 7 O -0.962 6.962 8 N -1.112 6.112 9 C 0.163 3.837 10 C -0.065 4.065 11 C -0.193 4.193 12 C -0.076 4.076 13 C -0.226 4.226 14 C 0.150 3.850 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.174 4.174 25 C -0.142 4.142 26 C -0.181 4.181 27 C -0.180 4.180 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.421 0.579 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 8.589 15.272 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.067 4.067 3 H 0.101 0.899 4 C -0.756 4.756 5 S 2.703 3.297 6 O -0.944 6.944 7 O -0.952 6.952 8 N -0.872 5.872 9 C 0.037 3.963 10 C -0.067 4.067 11 C -0.213 4.213 12 C -0.094 4.094 13 C -0.245 4.245 14 C 0.096 3.904 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.194 4.194 25 C -0.161 4.161 26 C -0.218 4.218 27 C -0.217 4.217 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.256 0.744 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.652 9.119 15.504 20.904 hybrid contribution 0.961 -0.911 -0.900 1.601 sum -9.691 8.208 14.604 19.354 Atomic orbital electron populations 1.22276 0.93390 1.03842 1.03958 1.20432 0.96580 0.98518 0.91185 0.89855 1.30732 1.12504 1.15247 1.17091 1.04955 0.74771 0.74457 0.75524 1.93582 1.29965 1.86605 1.84253 1.93601 1.74673 1.40918 1.86005 1.55589 1.55622 1.28888 1.47141 1.20173 0.98991 0.81894 0.95207 1.19132 0.94847 0.99160 0.93516 1.20527 1.00992 1.07313 0.92453 1.20763 0.95572 0.96694 0.96411 1.21250 0.97081 1.06621 0.99565 1.19322 0.86462 0.91568 0.93043 1.83976 1.29784 1.61542 1.32776 1.21373 1.10033 1.31754 0.83684 0.88986 1.25292 0.95221 0.96217 0.99764 1.70041 1.13094 1.35444 1.31092 0.85642 0.78829 0.78741 0.80183 1.19087 1.20119 1.20114 1.20056 0.97809 1.06202 0.95374 1.22248 0.95209 1.02006 0.96648 1.23010 0.93663 1.01927 1.03213 1.23074 1.04475 0.97782 0.96332 0.91180 0.90510 0.91281 0.84638 0.84598 0.74351 0.91291 0.89676 0.87255 0.87245 0.85466 0.92024 0.86359 0.87267 0.88534 0.88516 0.88687 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 8.86 37.15 0.33 -1.07 16 2 C -0.05 -0.38 2.54 -90.62 -0.23 -0.61 16 3 H 0.08 0.66 7.90 -51.93 -0.41 0.25 16 4 C -0.63 -4.99 5.43 37.16 0.20 -4.78 16 5 S 2.61 28.92 5.11 -107.50 -0.55 28.37 16 6 O -0.95 -12.74 15.24 -57.54 -0.88 -13.62 16 7 O -0.96 -13.69 18.08 -57.54 -1.04 -14.73 16 8 N -1.11 -12.99 5.88 -11.66 -0.07 -13.06 16 9 C 0.16 2.00 6.26 -5.20 -0.03 1.96 16 10 C -0.06 -1.05 5.27 -104.65 -0.55 -1.60 16 11 C -0.19 -3.18 9.70 -39.53 -0.38 -3.57 16 12 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 13 C -0.23 -4.70 9.17 -39.40 -0.36 -5.06 16 14 C 0.15 3.44 6.65 -39.11 -0.26 3.18 16 15 O -0.18 -4.87 9.76 0.04 0.00 -4.87 16 16 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 20 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.17 -3.38 9.65 -39.39 -0.38 -3.76 16 25 C -0.14 -1.02 5.15 -90.59 -0.47 -1.49 16 26 C -0.18 -1.31 9.67 -26.73 -0.26 -1.57 16 27 C -0.18 -1.21 10.18 -26.69 -0.27 -1.48 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.71 5.61 -51.93 -0.29 0.42 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 0.94 7.13 -51.92 -0.37 0.57 16 32 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.42 5.04 8.61 -34.47 -0.30 4.75 16 34 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.09 0.96 7.63 -51.93 -0.40 0.57 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 38 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 41 H 0.11 0.72 8.11 -51.93 -0.42 0.30 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.71 7.59 -51.93 -0.39 0.31 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -33.58 384.89 -10.37 -43.95 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.50 Total: 8.01 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: -2.87 Total: -30.98 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.69 Total: -36.99 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -1.92 Total: -33.22 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 28.92 SS G_CDS: -0.55 Total: 28.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.58 -10.37 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434550481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.477 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds