Wall clock time and date at job start Tue Mar 31 2020 22:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47410 * 2 1 4 4 C 1.52996 * 109.47421 * 239.99915 * 2 1 3 5 5 S 1.81400 * 109.46972 * 65.00340 * 4 2 1 6 6 O 1.42103 * 110.54113 * 291.62479 * 5 4 2 7 7 O 1.42091 * 110.54430 * 68.37642 * 5 4 2 8 8 N 1.65606 * 104.44891 * 180.02562 * 5 4 2 9 9 C 1.46496 * 120.00346 * 64.99547 * 8 5 4 10 10 C 1.50698 * 109.47021 * 165.00165 * 9 8 5 11 11 C 1.38330 * 119.96333 * 269.72425 * 10 9 8 12 12 C 1.38279 * 120.13397 * 179.76666 * 11 10 9 13 13 C 1.38116 * 120.07395 * 0.51320 * 12 11 10 14 14 C 1.38862 * 119.92722 * 359.74385 * 13 12 11 15 15 O 1.35748 * 120.06957 * 179.97438 * 14 13 12 16 16 C 1.34835 * 117.00015 * 354.48104 * 15 14 13 17 17 H 1.08002 * 119.99742 * 5.06317 * 16 15 14 18 18 C 1.38653 * 119.99862 * 185.05836 * 16 15 14 19 19 N 1.31554 * 120.00415 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99646 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47261 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47235 * 120.00181 * 20 18 16 23 23 H 1.48511 * 109.46958 * 239.99939 * 20 18 16 24 24 C 1.38078 * 119.96646 * 90.00362 * 10 9 8 25 25 C 1.53001 * 109.47093 * 120.00081 * 2 1 3 26 26 C 1.52995 * 117.50173 * 180.02562 * 25 2 1 27 27 C 1.52999 * 60.03214 * 107.47733 * 26 25 2 28 28 H 1.09001 * 109.47296 * 299.99934 * 1 2 3 29 29 H 1.09005 * 109.46766 * 59.99771 * 1 2 3 30 30 H 1.08998 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47498 * 185.00179 * 4 2 1 32 32 H 1.08997 * 109.47387 * 305.00013 * 4 2 1 33 33 H 0.97008 * 119.99305 * 245.00014 * 8 5 4 34 34 H 1.08999 * 109.47437 * 285.00343 * 9 8 5 35 35 H 1.09005 * 109.47002 * 45.00256 * 9 8 5 36 36 H 1.07995 * 119.93399 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.96229 * 180.25699 * 12 11 10 38 38 H 1.07998 * 120.04150 * 179.76420 * 13 12 11 39 39 H 0.97003 * 119.99898 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.03583 * 359.95394 * 24 10 9 41 41 H 1.09006 * 115.55903 * 34.30836 * 25 2 1 42 42 H 1.08999 * 117.50199 * 214.98224 * 26 25 2 43 43 H 1.09005 * 117.50225 * 359.97438 * 26 25 2 44 44 H 1.08998 * 117.49457 * 107.50445 * 27 26 25 45 45 H 1.08997 * 117.49658 * 252.51441 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5602 0.2157 -2.7265 6 8 0.1521 0.1683 -2.9115 7 8 2.2660 1.4474 -2.7869 8 7 2.1673 -0.6659 -3.9902 9 6 1.6503 -2.0096 -4.2612 10 6 2.0784 -2.4440 -5.6392 11 6 1.2736 -2.1711 -6.7307 12 6 1.6652 -2.5639 -7.9974 13 6 2.8567 -3.2394 -8.1752 14 6 3.6643 -3.5194 -7.0808 15 8 4.8357 -4.1836 -7.2521 16 6 5.1029 -4.6439 -8.4910 17 1 4.4393 -4.4074 -9.3097 18 6 6.2296 -5.4206 -8.7139 19 7 7.0377 -5.7089 -7.7167 20 14 6.6001 -6.0575 -10.4305 21 1 5.5447 -5.5969 -11.3679 22 1 7.9189 -5.5406 -10.8763 23 1 6.6311 -7.5422 -10.4115 24 6 3.2707 -3.1190 -5.8103 25 6 2.0399 -0.7213 1.2492 26 6 3.5549 -0.8276 1.4346 27 6 2.7420 0.1231 2.3156 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 2.8654 -0.2926 -4.5508 34 1 2.0445 -2.7066 -3.5217 35 1 0.5618 -1.9981 -4.2056 36 1 0.3395 -1.6467 -6.5939 37 1 1.0367 -2.3457 -8.8482 38 1 3.1602 -3.5492 -9.1643 39 1 7.8257 -6.2526 -7.8727 40 1 3.8968 -3.3350 -4.9573 41 1 1.4309 -1.5584 1.5906 42 1 3.9429 -1.7349 1.8976 43 1 4.1884 -0.3841 0.6664 44 1 2.5952 -0.1588 3.3583 45 1 2.8404 1.1921 2.1268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434550481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:49 Heat of formation + Delta-G solvation = -82.819350 kcal Electronic energy + Delta-G solvation = -26575.702735 eV Core-core repulsion = 22685.661752 eV Total energy + Delta-G solvation = -3890.040982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81437 -39.18898 -38.64846 -38.15056 -37.03339 -35.98743 -34.46597 -34.26989 -31.86605 -30.64047 -28.64072 -27.48665 -26.39482 -24.37534 -23.24095 -23.17148 -22.46919 -21.14211 -20.21633 -19.64390 -18.96833 -18.49893 -17.46779 -17.34334 -16.74761 -16.54263 -16.39545 -16.10335 -15.78276 -15.53236 -15.45871 -15.23023 -15.00900 -14.39007 -14.23583 -14.16074 -13.83143 -13.68813 -13.47092 -13.32196 -13.10393 -13.00213 -12.93873 -12.69571 -12.49568 -12.46414 -12.40856 -12.25659 -12.24096 -12.11309 -12.07812 -11.47173 -11.20178 -11.06544 -10.93214 -10.81220 -10.37248 -9.73107 -9.00850 -8.46845 -6.14563 -0.73812 0.46413 0.72973 1.36005 1.43250 1.53440 1.81638 2.17523 2.70103 2.84244 2.91530 3.16296 3.23150 3.43708 3.61520 3.62919 3.80253 3.85033 4.05008 4.11802 4.20083 4.29589 4.32491 4.40608 4.44052 4.48439 4.57603 4.61943 4.67758 4.75288 4.82542 4.89616 4.95098 5.05114 5.08223 5.11549 5.13592 5.25173 5.27461 5.30380 5.40064 5.64002 5.72843 5.75542 5.98815 6.03347 6.20153 6.98673 7.78741 8.76298 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.002343 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.942874 B =11947.917849 C =13152.626055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.053 4.053 3 H 0.079 0.921 4 C -0.609 4.609 5 S 2.618 3.382 6 O -0.978 6.978 7 O -0.998 6.998 8 N -1.116 6.116 9 C 0.160 3.840 10 C -0.053 4.053 11 C -0.177 4.177 12 C -0.075 4.075 13 C -0.239 4.239 14 C 0.110 3.890 15 O -0.230 6.230 16 C -0.411 4.411 17 H 0.101 0.899 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.016 2.984 21 H -0.253 1.253 22 H -0.270 1.270 23 H -0.269 1.269 24 C -0.179 4.179 25 C -0.141 4.141 26 C -0.190 4.190 27 C -0.180 4.180 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.419 0.581 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 8.911 16.061 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.073 4.073 3 H 0.098 0.902 4 C -0.741 4.741 5 S 2.716 3.284 6 O -0.968 6.968 7 O -0.989 6.989 8 N -0.875 5.875 9 C 0.035 3.965 10 C -0.055 4.055 11 C -0.196 4.196 12 C -0.093 4.093 13 C -0.259 4.259 14 C 0.060 3.940 15 O -0.137 6.137 16 C -0.487 4.487 17 H 0.118 0.882 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.836 3.164 21 H -0.176 1.176 22 H -0.195 1.195 23 H -0.194 1.194 24 C -0.199 4.199 25 C -0.161 4.161 26 C -0.227 4.227 27 C -0.217 4.217 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.179 0.821 33 H 0.254 0.746 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.124 0.876 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.908 9.493 16.266 22.832 hybrid contribution 1.359 -0.816 -0.941 1.844 sum -11.549 8.677 15.324 21.059 Atomic orbital electron populations 1.22317 0.93268 1.04495 1.03759 1.20513 0.96782 0.98558 0.91470 0.90239 1.30585 1.13611 1.15548 1.14399 1.04586 0.73787 0.74021 0.76051 1.93548 1.31325 1.86924 1.85025 1.93554 1.75183 1.43317 1.86807 1.55501 1.55506 1.28565 1.47890 1.20331 1.00265 0.82582 0.93316 1.19526 0.93078 0.97030 0.95872 1.21061 1.01643 1.05094 0.91835 1.21136 0.94471 0.95329 0.98335 1.21349 0.98297 1.07584 0.98638 1.19920 0.86388 0.92533 0.95193 1.83938 1.32460 1.64229 1.33058 1.21822 1.10581 1.32079 0.84264 0.88212 1.26522 0.94796 0.96303 1.04319 1.70175 1.14235 1.37577 1.33757 0.84559 0.78934 0.78149 0.74771 1.17598 1.19477 1.19376 1.20307 0.99034 1.06317 0.94268 1.22249 0.95190 1.02326 0.96287 1.23084 0.93695 1.02399 1.03485 1.23163 1.03953 0.97756 0.96846 0.90098 0.92071 0.90218 0.83263 0.82118 0.74630 0.88525 0.87851 0.83927 0.83952 0.86505 0.91879 0.86073 0.86243 0.87966 0.88894 0.87642 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 8.86 71.98 0.64 -1.81 16 2 C -0.05 -0.72 2.54 -10.80 -0.03 -0.75 16 3 H 0.08 1.14 7.90 -2.39 -0.02 1.12 16 4 C -0.61 -7.97 5.43 71.98 0.39 -7.58 16 5 S 2.62 53.24 5.11 -56.49 -0.29 52.95 16 6 O -0.98 -24.17 15.24 -127.65 -1.95 -26.11 16 7 O -1.00 -27.73 18.08 -127.65 -2.31 -30.04 16 8 N -1.12 -23.46 5.88 -190.80 -1.12 -24.58 16 9 C 0.16 3.38 6.26 85.63 0.54 3.92 16 10 C -0.05 -1.60 5.27 -19.88 -0.10 -1.71 16 11 C -0.18 -5.23 9.70 22.30 0.22 -5.01 16 12 C -0.07 -2.46 10.04 22.25 0.22 -2.23 16 13 C -0.24 -10.02 9.17 22.39 0.21 -9.81 16 14 C 0.11 5.20 6.65 22.58 0.15 5.35 16 15 O -0.23 -13.36 9.76 -22.77 -0.22 -13.59 16 16 C -0.41 -23.39 9.49 67.92 0.64 -22.75 16 17 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 18 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 19 N -0.92 -55.27 13.67 21.61 0.30 -54.98 16 20 Si 1.02 42.18 29.55 68.60 2.03 44.21 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 24 C -0.18 -6.91 9.65 22.39 0.22 -6.69 16 25 C -0.14 -1.66 5.15 -10.77 -0.06 -1.71 16 26 C -0.19 -2.34 9.67 30.59 0.30 -2.04 16 27 C -0.18 -2.04 10.18 30.62 0.31 -1.73 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.04 5.61 -2.38 -0.01 1.02 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.15 1.64 7.13 -2.39 -0.02 1.63 16 32 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.42 9.41 8.61 -96.74 -0.83 8.57 16 34 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 35 H 0.10 1.88 7.63 -2.38 -0.02 1.86 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 39 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.12 1.18 8.11 -2.38 -0.02 1.16 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.09 1.20 7.59 -2.38 -0.02 1.18 16 44 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 1.08 8.05 -2.39 -0.02 1.06 16 Total: -1.00 -77.00 384.89 0.72 -76.29 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.17 Total: 31.18 kcal Atomic # 6 Polarization: -59.42 SS G_CDS: 4.11 Total: -55.32 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -0.83 Total: -79.56 kcal Atomic # 8 Polarization: -65.26 SS G_CDS: -4.48 Total: -69.74 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 53.24 SS G_CDS: -0.29 Total: 52.95 kcal Total: -77.00 0.72 -76.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434550481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.533 kcal (2) G-P(sol) polarization free energy of solvation -77.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds