Wall clock time and date at job start Tue Mar 31 2020 22:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46725 * 2 1 4 4 C 1.52995 * 109.47229 * 240.00088 * 2 1 3 5 5 S 1.81403 * 109.47174 * 64.99718 * 4 2 1 6 6 O 1.42092 * 110.54452 * 291.62659 * 5 4 2 7 7 O 1.42108 * 110.54113 * 68.37784 * 5 4 2 8 8 N 1.65599 * 104.44957 * 180.02562 * 5 4 2 9 9 C 1.46496 * 120.00349 * 65.00241 * 8 5 4 10 10 C 1.50697 * 109.47428 * 164.99704 * 9 8 5 11 11 C 1.38295 * 119.93201 * 269.72928 * 10 9 8 12 12 C 1.38098 * 120.06743 * 179.72805 * 11 10 9 13 13 C 1.38875 * 119.93340 * 0.56298 * 12 11 10 14 14 O 1.35749 * 120.07352 * 179.68686 * 13 12 11 15 15 C 1.34836 * 117.00283 * 174.49117 * 14 13 12 16 16 H 1.08004 * 119.99549 * 5.05202 * 15 14 13 17 17 C 1.38648 * 120.00153 * 185.05383 * 15 14 13 18 18 N 1.31554 * 119.99929 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00020 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46896 * 60.00563 * 19 17 15 21 21 H 1.48498 * 109.47167 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47362 * 300.00181 * 19 17 15 23 23 C 1.38883 * 119.86007 * 359.71187 * 13 12 11 24 24 C 1.38099 * 119.92902 * 359.97438 * 23 13 12 25 25 C 1.52996 * 109.47141 * 119.99923 * 2 1 3 26 26 C 1.53002 * 117.50001 * 299.99859 * 25 2 1 27 27 C 1.52992 * 60.03236 * 252.49847 * 26 25 2 28 28 H 1.09002 * 109.46961 * 299.99587 * 1 2 3 29 29 H 1.09000 * 109.47639 * 59.99944 * 1 2 3 30 30 H 1.08996 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47236 * 184.99768 * 4 2 1 32 32 H 1.09001 * 109.47247 * 305.00011 * 4 2 1 33 33 H 0.97007 * 119.99860 * 244.99646 * 8 5 4 34 34 H 1.08998 * 109.47150 * 285.00030 * 9 8 5 35 35 H 1.09007 * 109.46790 * 44.99827 * 9 8 5 36 36 H 1.08000 * 119.96764 * 359.97438 * 11 10 9 37 37 H 1.08002 * 120.03397 * 180.27095 * 12 11 10 38 38 H 0.97002 * 120.00511 * 179.97438 * 18 17 15 39 39 H 1.07995 * 120.03688 * 179.97438 * 23 13 12 40 40 H 1.08006 * 119.96481 * 180.02562 * 24 23 13 41 41 H 1.09002 * 115.56254 * 85.68862 * 25 2 1 42 42 H 1.08994 * 117.49898 * 0.02562 * 26 25 2 43 43 H 1.09002 * 117.49593 * 144.99439 * 26 25 2 44 44 H 1.09001 * 117.50059 * 107.50524 * 27 26 25 45 45 H 1.09003 * 117.50148 * 252.51761 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5601 0.2156 -2.7266 6 8 0.1520 0.1683 -2.9115 7 8 2.2659 1.4475 -2.7870 8 7 2.1671 -0.6659 -3.9902 9 6 1.6501 -2.0096 -4.2612 10 6 2.0780 -2.4440 -5.6393 11 6 1.2728 -2.1708 -6.7300 12 6 1.6649 -2.5626 -7.9949 13 6 2.8634 -3.2420 -8.1695 14 8 3.2485 -3.6341 -9.4108 15 6 4.4731 -4.1865 -9.5259 16 1 5.0658 -4.3747 -8.6428 17 6 4.9716 -4.5128 -10.7778 18 7 4.2499 -4.2831 -11.8535 19 14 6.6684 -5.2775 -10.9373 20 1 6.7052 -6.5607 -10.1909 21 1 6.9653 -5.5292 -12.3704 22 1 7.6840 -4.3498 -10.3775 23 6 3.6671 -3.5199 -7.0714 24 6 3.2726 -3.1197 -5.8100 25 6 2.0400 -0.7212 1.2492 26 6 1.6357 -0.1495 2.6096 27 6 3.0743 0.0054 2.1125 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1263 -0.7994 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 2.8651 -0.2926 -4.5510 34 1 2.0443 -2.7066 -3.5218 35 1 0.5615 -1.9980 -4.2055 36 1 0.3384 -1.6469 -6.5930 37 1 1.0377 -2.3451 -8.8468 38 1 4.5987 -4.5110 -12.7294 39 1 4.5995 -4.0484 -7.2039 40 1 3.8973 -3.3351 -4.9557 41 1 2.1271 -1.8044 1.1643 42 1 1.0061 0.7402 2.6146 43 1 1.4564 -0.8566 3.4195 44 1 3.3916 0.9972 1.7905 45 1 3.8416 -0.6001 2.5952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463006414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:56 Heat of formation + Delta-G solvation = -83.673617 kcal Electronic energy + Delta-G solvation = -26318.669063 eV Core-core repulsion = 22428.591037 eV Total energy + Delta-G solvation = -3890.078026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80801 -39.16524 -38.67958 -38.11398 -36.98954 -35.83648 -34.47067 -34.24124 -31.79744 -30.91910 -28.55418 -27.57284 -25.86942 -24.50931 -23.61953 -23.10579 -22.18046 -20.97784 -20.24861 -19.85166 -18.95177 -18.55156 -17.60773 -17.38804 -16.46242 -16.45073 -16.37631 -16.05367 -15.57799 -15.49752 -15.44195 -15.11157 -14.87987 -14.44912 -14.33751 -14.14448 -13.93244 -13.68981 -13.44974 -13.42602 -13.07730 -13.00545 -12.90096 -12.65021 -12.53039 -12.40596 -12.36564 -12.31602 -12.16656 -12.08198 -12.01912 -11.49038 -11.18851 -11.03612 -10.86355 -10.79105 -10.29970 -9.77928 -8.97651 -8.47038 -6.15519 -0.69452 0.60402 0.62627 1.35880 1.46162 1.52222 1.87554 2.18038 2.77992 2.85212 2.93215 3.17107 3.29624 3.47891 3.51497 3.73411 3.86010 3.88261 4.08130 4.10577 4.20364 4.21813 4.33433 4.48403 4.51084 4.53207 4.60072 4.62025 4.70571 4.82391 4.83622 4.90058 5.04070 5.05614 5.07981 5.10240 5.15915 5.29125 5.31009 5.33468 5.39952 5.56999 5.71619 5.78550 6.02702 6.08823 6.21866 6.97453 7.78091 8.75800 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.002034 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.453602 B =13762.868992 C =14434.212836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.054 4.054 3 H 0.077 0.923 4 C -0.602 4.602 5 S 2.612 3.388 6 O -0.985 6.985 7 O -1.002 7.002 8 N -1.116 6.116 9 C 0.170 3.830 10 C -0.175 4.175 11 C -0.053 4.053 12 C -0.210 4.210 13 C 0.118 3.882 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.105 0.895 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.246 4.246 24 C -0.045 4.045 25 C -0.143 4.143 26 C -0.180 4.180 27 C -0.188 4.188 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.272 0.728 39 H 0.122 0.878 40 H 0.154 0.846 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 4.720 29.558 30.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.075 4.075 3 H 0.096 0.904 4 C -0.735 4.735 5 S 2.710 3.290 6 O -0.975 6.975 7 O -0.992 6.992 8 N -0.876 5.876 9 C 0.045 3.955 10 C -0.178 4.178 11 C -0.072 4.072 12 C -0.230 4.230 13 C 0.067 3.933 14 O -0.139 6.139 15 C -0.489 4.489 16 H 0.123 0.877 17 C -0.222 4.222 18 N -0.559 5.559 19 Si 0.839 3.161 20 H -0.179 1.179 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.265 4.265 24 C -0.064 4.064 25 C -0.162 4.162 26 C -0.217 4.217 27 C -0.225 4.225 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.176 0.824 32 H 0.181 0.819 33 H 0.254 0.746 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.159 0.841 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.172 0.828 41 H 0.139 0.861 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.111 0.889 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.557 5.451 29.125 29.844 hybrid contribution 1.192 -0.582 -0.987 1.653 sum -2.365 4.868 28.138 28.654 Atomic orbital electron populations 1.22338 0.93852 1.04426 1.03471 1.20498 0.96313 0.98735 0.91911 0.90440 1.30505 1.13994 1.15240 1.13715 1.04713 0.73739 0.74186 0.76399 1.93547 1.31829 1.86984 1.85161 1.93554 1.75152 1.43583 1.86939 1.55563 1.55461 1.28980 1.47574 1.20206 0.99634 0.82261 0.93410 1.19596 0.96884 1.06032 0.95256 1.20952 0.99370 0.96420 0.90477 1.20444 0.97071 1.06546 0.98910 1.20005 0.94586 0.92888 0.85834 1.83949 1.34516 1.69862 1.25583 1.21812 0.91515 1.40320 0.95261 0.87741 1.26627 1.04370 0.97769 0.93475 1.70183 1.39739 1.47033 0.98939 0.84633 0.74531 0.78865 0.78107 1.17941 1.19916 1.18142 1.21306 1.02570 1.09291 0.93309 1.21059 0.95235 0.94316 0.95792 1.22242 1.04102 0.99740 0.90141 1.23062 0.97950 1.03629 0.97022 1.23177 0.93005 1.02246 1.04082 0.90423 0.92314 0.90281 0.82373 0.81893 0.74623 0.87586 0.89341 0.84126 0.87325 0.91876 0.86029 0.82836 0.86148 0.88608 0.87759 0.88895 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.72 71.98 0.63 -1.72 16 2 C -0.05 -0.63 2.54 -10.80 -0.03 -0.66 16 3 H 0.08 0.99 7.90 -2.39 -0.02 0.97 16 4 C -0.60 -5.77 5.50 71.98 0.40 -5.38 16 5 S 2.61 48.49 5.11 -56.49 -0.29 48.21 16 6 O -0.99 -24.04 15.24 -127.65 -1.95 -25.99 16 7 O -1.00 -26.49 18.08 -127.65 -2.31 -28.79 16 8 N -1.12 -20.26 5.88 -190.80 -1.12 -21.38 16 9 C 0.17 3.00 6.25 85.63 0.54 3.54 16 10 C -0.18 -4.72 5.28 -19.84 -0.10 -4.82 16 11 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 12 C -0.21 -8.78 9.99 22.39 0.22 -8.56 16 13 C 0.12 5.68 6.65 22.58 0.15 5.83 16 14 O -0.23 -13.81 9.76 -22.78 -0.22 -14.03 16 15 C -0.41 -23.54 9.49 67.92 0.64 -22.89 16 16 H 0.11 5.36 5.20 -2.91 -0.02 5.35 16 17 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 18 N -0.92 -56.22 13.67 21.61 0.30 -55.93 16 19 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 C -0.25 -9.87 9.17 22.39 0.21 -9.67 16 24 C -0.05 -1.33 9.69 22.25 0.22 -1.11 16 25 C -0.14 -1.33 5.15 -10.77 -0.06 -1.38 16 26 C -0.18 -1.58 9.73 30.59 0.30 -1.28 16 27 C -0.19 -1.77 10.18 30.62 0.31 -1.45 16 28 H 0.08 0.83 7.29 -2.39 -0.02 0.81 16 29 H 0.06 0.98 5.61 -2.39 -0.01 0.97 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.42 8.07 8.61 -96.74 -0.83 7.24 16 34 H 0.11 1.05 8.08 -2.39 -0.02 1.03 16 35 H 0.09 1.51 7.63 -2.38 -0.02 1.49 16 36 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.12 4.96 5.64 -2.91 -0.02 4.94 16 40 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 41 H 0.12 0.86 8.11 -2.39 -0.02 0.84 16 42 H 0.10 0.84 7.61 -2.39 -0.02 0.82 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 0.93 8.05 -2.39 -0.02 0.91 16 45 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -79.89 385.07 0.71 -79.18 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.17 Total: 26.72 kcal Atomic # 6 Polarization: -56.10 SS G_CDS: 4.10 Total: -52.00 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -0.83 Total: -77.31 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -4.48 Total: -68.81 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 48.49 SS G_CDS: -0.29 Total: 48.21 kcal Total: -79.89 0.71 -79.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463006414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.492 kcal (2) G-P(sol) polarization free energy of solvation -79.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds