Wall clock time and date at job start Tue Mar 31 2020 23:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00391 * 2 1 4 4 C 1.53000 * 110.01536 * 70.76250 * 3 2 1 5 5 O 1.42899 * 109.47219 * 55.22571 * 4 3 2 6 6 C 1.54266 * 110.03602 * 192.15300 * 3 2 1 7 7 C 1.54967 * 104.15914 * 95.75841 * 6 3 2 8 8 C 1.54888 * 102.77943 * 37.88647 * 7 6 3 9 9 C 1.53873 * 110.03413 * 309.37528 * 3 2 1 10 10 S 1.65603 * 120.00090 * 180.02562 * 2 1 3 11 11 O 1.42105 * 106.40233 * 225.31465 * 10 2 1 12 12 O 1.42101 * 106.39883 * 358.22894 * 10 2 1 13 13 C 1.76198 * 107.22234 * 111.76714 * 10 2 1 14 14 C 1.37636 * 120.12315 * 116.72845 * 13 10 2 15 15 C 1.38618 * 120.24594 * 179.72704 * 14 13 10 16 16 C 1.38657 * 120.49860 * 0.54887 * 15 14 13 17 17 C 1.37602 * 120.24927 * 359.73132 * 16 15 14 18 18 C 1.40694 * 120.13036 * 297.00529 * 13 10 2 19 19 C 1.41397 * 120.24220 * 359.97438 * 18 13 10 20 20 H 1.07999 * 120.00144 * 327.93801 * 19 18 13 21 21 C 1.39946 * 120.00077 * 147.94516 * 19 18 13 22 22 N 1.30820 * 119.99695 * 348.53493 * 21 19 18 23 23 Si 1.86801 * 119.99828 * 168.54059 * 21 19 18 24 24 H 1.48500 * 109.47398 * 4.91960 * 23 21 19 25 25 H 1.48503 * 109.47055 * 124.92448 * 23 21 19 26 26 H 1.48505 * 109.46765 * 244.91824 * 23 21 19 27 27 H 1.09009 * 109.46861 * 89.99588 * 1 2 3 28 28 H 1.08998 * 109.47376 * 209.99396 * 1 2 3 29 29 H 1.08997 * 109.47067 * 330.00103 * 1 2 3 30 30 H 1.09005 * 109.47521 * 175.22734 * 4 3 2 31 31 H 1.09000 * 109.47033 * 295.23136 * 4 3 2 32 32 H 0.96704 * 114.00283 * 179.97438 * 5 4 3 33 33 H 1.09001 * 110.48603 * 214.40416 * 6 3 2 34 34 H 1.08993 * 110.48465 * 337.04683 * 6 3 2 35 35 H 1.09006 * 110.71606 * 279.57651 * 7 6 3 36 36 H 1.08998 * 110.76795 * 156.22417 * 7 6 3 37 37 H 1.08995 * 110.48671 * 203.40807 * 8 7 6 38 38 H 1.08997 * 110.48555 * 80.75967 * 8 7 6 39 39 H 1.08999 * 110.03259 * 359.94689 * 9 3 2 40 40 H 1.08994 * 110.03743 * 121.37704 * 9 3 2 41 41 H 1.07997 * 119.88191 * 359.97438 * 14 13 10 42 42 H 1.08004 * 119.75381 * 180.25782 * 15 14 13 43 43 H 1.08002 * 119.87646 * 179.74570 * 16 15 14 44 44 H 1.08000 * 120.12591 * 179.97438 * 17 16 15 45 45 H 0.96999 * 119.99495 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.0492 1.9590 1.3573 5 8 2.4718 1.0696 2.3928 6 6 3.6888 1.0179 -0.3051 7 6 3.8098 1.2615 -1.8307 8 6 2.8544 2.4582 -2.0634 9 6 1.6670 2.1838 -1.1175 10 16 2.2930 -1.4342 -0.0006 11 8 3.3239 -1.3028 0.9686 12 8 1.3136 -2.4629 0.0410 13 6 3.0944 -1.5732 -1.5637 14 6 4.4685 -1.6065 -1.6349 15 6 5.1014 -1.7215 -2.8628 16 6 4.3604 -1.7928 -4.0325 17 6 2.9857 -1.7556 -3.9856 18 6 2.3322 -1.6447 -2.7442 19 6 0.9201 -1.6061 -2.6836 20 1 0.4043 -2.0270 -1.8332 21 6 0.1907 -1.0226 -3.7257 22 7 0.8061 -0.3185 -4.6405 23 14 -1.6616 -1.2491 -3.8104 24 1 -2.1267 -1.9793 -2.6038 25 1 -2.3207 0.0803 -3.8693 26 1 -2.0099 -2.0285 -5.0255 27 1 -0.3633 0.0001 -1.0278 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 2.6651 2.8582 1.3769 31 1 1.0053 2.2301 1.5149 32 1 2.4053 1.4421 3.2828 33 1 4.3142 1.7216 0.2442 34 1 3.9611 -0.0084 -0.0591 35 1 3.4759 0.3866 -2.3886 36 1 4.8324 1.5257 -2.1000 37 1 2.5186 2.4824 -3.1000 38 1 3.3446 3.3949 -1.7982 39 1 0.8650 1.6836 -1.6604 40 1 1.3038 3.1196 -0.6929 41 1 5.0557 -1.5468 -0.7305 42 1 6.1801 -1.7511 -2.9091 43 1 4.8641 -1.8781 -4.9841 44 1 2.4105 -1.8109 -4.8980 45 1 0.3005 0.0863 -5.3626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464232785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:03 Heat of formation + Delta-G solvation = -85.210995 kcal Electronic energy + Delta-G solvation = -31219.002949 eV Core-core repulsion = 27328.858257 eV Total energy + Delta-G solvation = -3890.144692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.22344 -37.65458 -36.31722 -35.67253 -34.75844 -33.97507 -33.46841 -30.29534 -29.71531 -28.89339 -28.20242 -25.60140 -25.17020 -23.64292 -21.61622 -21.13858 -20.36289 -19.43975 -17.71984 -17.58208 -16.98952 -16.56448 -16.08022 -15.63685 -15.38543 -14.98732 -14.33094 -14.24047 -14.03475 -13.66838 -13.23710 -13.18450 -12.96997 -12.77560 -12.59598 -12.17614 -11.96180 -11.78512 -11.57942 -11.46488 -11.29637 -11.24499 -11.07504 -10.91769 -10.86550 -10.61561 -10.51612 -10.47184 -10.45308 -10.13807 -9.87333 -9.77077 -9.70641 -9.48555 -9.44064 -9.15160 -8.18712 -7.89995 -7.54473 -7.02742 -4.74112 1.63626 2.36202 2.71347 2.96809 3.05013 3.08045 3.77863 3.89030 4.40621 4.49623 4.83432 5.03244 5.13690 5.25055 5.41249 5.53072 5.58440 5.61195 5.66164 5.82220 6.00893 6.04374 6.06446 6.09685 6.18081 6.24266 6.28010 6.39134 6.42514 6.43804 6.51458 6.61076 6.71499 6.79967 6.85988 6.92740 6.98110 7.08061 7.29491 7.33855 7.44514 7.54595 7.71381 7.81704 7.96947 7.97137 8.37717 8.55798 8.66399 9.91608 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.007770 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.950634 B = 3602.759512 C = 4219.805340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.974 5.974 3 C 0.196 3.804 4 C 0.074 3.926 5 O -0.547 6.547 6 C -0.166 4.166 7 C -0.139 4.139 8 C -0.116 4.116 9 C -0.123 4.123 10 S 2.709 3.291 11 O -0.978 6.978 12 O -0.983 6.983 13 C -0.772 4.772 14 C 0.000 4.000 15 C -0.244 4.244 16 C -0.077 4.077 17 C -0.155 4.155 18 C 0.198 3.802 19 C -0.472 4.472 20 H 0.110 0.890 21 C 0.084 3.916 22 N -0.778 5.778 23 Si 0.899 3.101 24 H -0.250 1.250 25 H -0.271 1.271 26 H -0.269 1.269 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.366 0.634 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 7.447 4.362 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.809 5.809 3 C 0.108 3.892 4 C -0.006 4.006 5 O -0.350 6.350 6 C -0.203 4.203 7 C -0.176 4.176 8 C -0.154 4.154 9 C -0.162 4.162 10 S 2.808 3.192 11 O -0.968 6.968 12 O -0.974 6.974 13 C -0.866 4.866 14 C -0.020 4.020 15 C -0.265 4.265 16 C -0.096 4.096 17 C -0.175 4.175 18 C 0.193 3.807 19 C -0.501 4.501 20 H 0.128 0.872 21 C -0.136 4.136 22 N -0.402 5.402 23 Si 0.722 3.278 24 H -0.173 1.173 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.211 0.789 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.136 0.864 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.569 6.605 4.370 7.941 hybrid contribution -0.720 0.866 -0.586 1.269 sum -1.289 7.471 3.785 8.474 Atomic orbital electron populations 1.21424 0.79551 1.01809 1.02244 1.57134 1.13788 1.20102 1.89897 1.20663 0.92116 0.84347 0.92087 1.22660 0.97436 0.91823 0.88696 1.86778 1.88858 1.42542 1.16829 1.23418 0.93359 1.06262 0.97270 1.22985 0.98470 1.00481 0.95676 1.22241 0.95921 0.97792 0.99424 1.22455 0.99683 0.98033 0.96000 1.00974 0.72502 0.71518 0.74189 1.93421 1.57822 1.85926 1.59624 1.93433 1.60992 1.54934 1.88056 1.29923 1.03517 1.33863 1.19311 1.20219 0.92405 0.92466 0.96907 1.20458 0.97494 1.15687 0.92820 1.20878 0.94716 0.97652 0.96345 1.21426 0.92893 1.04616 0.98540 1.16926 0.92248 0.82076 0.89414 1.20373 0.91483 1.32147 1.06055 0.87214 1.25896 1.01458 0.92513 0.93766 1.69792 1.38642 1.21678 1.10081 0.86373 0.81714 0.79323 0.80391 1.17340 1.19585 1.19401 0.91998 0.91029 0.92459 0.93498 0.94091 0.78916 0.90835 0.87443 0.86857 0.92649 0.91461 0.93065 0.89466 0.92401 0.87508 0.88819 0.88995 0.86355 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 8.43 59.85 0.50 2.17 16 2 N -0.97 -18.89 2.64 -106.61 -0.28 -19.17 16 3 C 0.20 3.38 0.69 -130.70 -0.09 3.29 16 4 C 0.07 1.06 5.56 37.16 0.21 1.26 16 5 O -0.55 -8.58 12.57 -37.95 -0.48 -9.05 16 6 C -0.17 -3.06 4.80 -25.03 -0.12 -3.18 16 7 C -0.14 -2.59 5.73 -24.70 -0.14 -2.73 16 8 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 9 C -0.12 -1.96 5.89 -25.61 -0.15 -2.11 16 10 S 2.71 61.77 4.41 -107.50 -0.47 61.29 16 11 O -0.98 -23.08 13.77 -60.40 -0.83 -23.91 16 12 O -0.98 -24.69 14.33 -57.17 -0.82 -25.51 16 13 C -0.77 -17.95 3.51 -38.87 -0.14 -18.08 16 14 C 0.00 0.00 6.70 -39.66 -0.27 -0.27 16 15 C -0.24 -5.12 9.79 -39.29 -0.38 -5.50 16 16 C -0.08 -1.65 9.94 -39.66 -0.39 -2.05 16 17 C -0.16 -3.66 8.39 -38.87 -0.33 -3.98 16 18 C 0.20 4.80 4.48 -106.83 -0.48 4.32 16 19 C -0.47 -11.35 6.72 -37.74 -0.25 -11.60 16 20 H 0.11 2.73 5.06 -52.49 -0.27 2.46 16 21 C 0.08 1.88 5.22 -17.34 -0.09 1.79 16 22 N -0.78 -17.48 11.12 55.55 0.62 -16.86 16 23 Si 0.90 17.21 29.57 -169.99 -5.03 12.19 16 24 H -0.25 -4.87 7.11 56.52 0.40 -4.46 16 25 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 26 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 27 H 0.06 1.11 6.65 -51.92 -0.35 0.77 16 28 H 0.07 1.26 7.17 -51.93 -0.37 0.89 16 29 H 0.06 0.80 7.17 -51.93 -0.37 0.43 16 30 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.04 0.51 7.35 -51.93 -0.38 0.13 16 32 H 0.37 3.77 9.12 45.56 0.42 4.18 16 33 H 0.07 1.23 7.79 -51.93 -0.40 0.83 16 34 H 0.11 2.24 1.82 -36.40 -0.07 2.17 16 35 H 0.11 2.44 3.53 -51.93 -0.18 2.26 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.54 6.77 -51.93 -0.35 1.19 16 40 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 41 H 0.11 2.24 6.85 -52.49 -0.36 1.88 16 42 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.12 2.85 6.51 -52.49 -0.34 2.51 16 45 H 0.28 5.84 8.30 -40.82 -0.34 5.50 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -28.94 342.76 -9.51 -38.45 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.09 Total: 16.16 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: -2.29 Total: -38.76 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.34 Total: -36.03 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -2.13 Total: -58.47 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.19 kcal Atomic # 16 Polarization: 61.77 SS G_CDS: -0.47 Total: 61.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.94 -9.51 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464232785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.758 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds