Wall clock time and date at job start Tue Mar 31 2020 23:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00391 * 2 1 4 4 C 1.53000 * 110.01536 * 70.76250 * 3 2 1 5 5 O 1.42899 * 109.47219 * 55.22571 * 4 3 2 6 6 C 1.54266 * 110.03602 * 192.15300 * 3 2 1 7 7 C 1.54967 * 104.15914 * 95.75841 * 6 3 2 8 8 C 1.54888 * 102.77943 * 37.88647 * 7 6 3 9 9 C 1.53873 * 110.03413 * 309.37528 * 3 2 1 10 10 S 1.65603 * 120.00090 * 180.02562 * 2 1 3 11 11 O 1.42105 * 106.40233 * 225.31465 * 10 2 1 12 12 O 1.42101 * 106.39883 * 358.22894 * 10 2 1 13 13 C 1.76198 * 107.22234 * 111.76714 * 10 2 1 14 14 C 1.37636 * 120.12315 * 116.72845 * 13 10 2 15 15 C 1.38618 * 120.24594 * 179.72704 * 14 13 10 16 16 C 1.38657 * 120.49860 * 0.54887 * 15 14 13 17 17 C 1.37602 * 120.24927 * 359.73132 * 16 15 14 18 18 C 1.40694 * 120.13036 * 297.00529 * 13 10 2 19 19 C 1.41397 * 120.24220 * 359.97438 * 18 13 10 20 20 H 1.07999 * 120.00144 * 327.93801 * 19 18 13 21 21 C 1.39946 * 120.00077 * 147.94516 * 19 18 13 22 22 N 1.30820 * 119.99695 * 348.53493 * 21 19 18 23 23 Si 1.86801 * 119.99828 * 168.54059 * 21 19 18 24 24 H 1.48500 * 109.47398 * 4.91960 * 23 21 19 25 25 H 1.48503 * 109.47055 * 124.92448 * 23 21 19 26 26 H 1.48505 * 109.46765 * 244.91824 * 23 21 19 27 27 H 1.09009 * 109.46861 * 89.99588 * 1 2 3 28 28 H 1.08998 * 109.47376 * 209.99396 * 1 2 3 29 29 H 1.08997 * 109.47067 * 330.00103 * 1 2 3 30 30 H 1.09005 * 109.47521 * 175.22734 * 4 3 2 31 31 H 1.09000 * 109.47033 * 295.23136 * 4 3 2 32 32 H 0.96704 * 114.00283 * 179.97438 * 5 4 3 33 33 H 1.09001 * 110.48603 * 214.40416 * 6 3 2 34 34 H 1.08993 * 110.48465 * 337.04683 * 6 3 2 35 35 H 1.09006 * 110.71606 * 279.57651 * 7 6 3 36 36 H 1.08998 * 110.76795 * 156.22417 * 7 6 3 37 37 H 1.08995 * 110.48671 * 203.40807 * 8 7 6 38 38 H 1.08997 * 110.48555 * 80.75967 * 8 7 6 39 39 H 1.08999 * 110.03259 * 359.94689 * 9 3 2 40 40 H 1.08994 * 110.03743 * 121.37704 * 9 3 2 41 41 H 1.07997 * 119.88191 * 359.97438 * 14 13 10 42 42 H 1.08004 * 119.75381 * 180.25782 * 15 14 13 43 43 H 1.08002 * 119.87646 * 179.74570 * 16 15 14 44 44 H 1.08000 * 120.12591 * 179.97438 * 17 16 15 45 45 H 0.96999 * 119.99495 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.0492 1.9590 1.3573 5 8 2.4718 1.0696 2.3928 6 6 3.6888 1.0179 -0.3051 7 6 3.8098 1.2615 -1.8307 8 6 2.8544 2.4582 -2.0634 9 6 1.6670 2.1838 -1.1175 10 16 2.2930 -1.4342 -0.0006 11 8 3.3239 -1.3028 0.9686 12 8 1.3136 -2.4629 0.0410 13 6 3.0944 -1.5732 -1.5637 14 6 4.4685 -1.6065 -1.6349 15 6 5.1014 -1.7215 -2.8628 16 6 4.3604 -1.7928 -4.0325 17 6 2.9857 -1.7556 -3.9856 18 6 2.3322 -1.6447 -2.7442 19 6 0.9201 -1.6061 -2.6836 20 1 0.4043 -2.0270 -1.8332 21 6 0.1907 -1.0226 -3.7257 22 7 0.8061 -0.3185 -4.6405 23 14 -1.6616 -1.2491 -3.8104 24 1 -2.1267 -1.9793 -2.6038 25 1 -2.3207 0.0803 -3.8693 26 1 -2.0099 -2.0285 -5.0255 27 1 -0.3633 0.0001 -1.0278 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 2.6651 2.8582 1.3769 31 1 1.0053 2.2301 1.5149 32 1 2.4053 1.4421 3.2828 33 1 4.3142 1.7216 0.2442 34 1 3.9611 -0.0084 -0.0591 35 1 3.4759 0.3866 -2.3886 36 1 4.8324 1.5257 -2.1000 37 1 2.5186 2.4824 -3.1000 38 1 3.3446 3.3949 -1.7982 39 1 0.8650 1.6836 -1.6604 40 1 1.3038 3.1196 -0.6929 41 1 5.0557 -1.5468 -0.7305 42 1 6.1801 -1.7511 -2.9091 43 1 4.8641 -1.8781 -4.9841 44 1 2.4105 -1.8109 -4.8980 45 1 0.3005 0.0863 -5.3626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464232785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:02 Heat of formation + Delta-G solvation = -104.804741 kcal Electronic energy + Delta-G solvation = -31219.852598 eV Core-core repulsion = 27328.858257 eV Total energy + Delta-G solvation = -3890.994340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.59856 -39.32203 -38.09196 -36.84143 -36.58978 -35.65694 -34.95074 -32.01186 -31.43149 -30.17447 -29.59133 -27.27937 -26.59345 -24.90683 -23.34976 -22.86674 -21.78250 -20.81765 -19.46154 -19.24969 -18.24163 -18.08974 -17.61545 -17.24939 -17.00542 -16.33157 -15.94491 -15.78897 -15.32347 -15.14860 -14.91356 -14.82251 -14.42721 -14.36395 -14.08562 -13.60223 -13.40619 -13.35009 -13.16323 -13.05338 -12.95049 -12.82812 -12.77185 -12.54446 -12.32151 -12.13877 -12.10271 -11.87280 -11.79510 -11.58166 -11.53541 -11.23008 -11.11494 -11.07059 -10.90933 -10.66390 -9.71000 -9.54637 -9.30209 -8.71482 -6.52217 -0.05988 0.61967 1.03328 1.39464 1.48341 1.52258 2.19553 2.32255 2.69273 3.09505 3.34044 3.57805 3.76663 3.86771 3.88278 4.11106 4.26986 4.36627 4.47992 4.52725 4.55264 4.64910 4.67954 4.74336 4.77293 4.78775 4.87250 4.93770 5.05422 5.06569 5.12762 5.18048 5.22942 5.24322 5.29781 5.36220 5.48517 5.57771 5.60492 5.77651 5.84465 5.91960 6.07039 6.08218 6.21772 6.59146 6.80698 6.90338 7.13736 8.24943 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.007770 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.950634 B = 3602.759512 C = 4219.805340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.970 5.970 3 C 0.186 3.814 4 C 0.075 3.925 5 O -0.578 6.578 6 C -0.169 4.169 7 C -0.143 4.143 8 C -0.110 4.110 9 C -0.118 4.118 10 S 2.714 3.286 11 O -0.991 6.991 12 O -1.017 7.017 13 C -0.778 4.778 14 C -0.006 4.006 15 C -0.243 4.243 16 C -0.074 4.074 17 C -0.179 4.179 18 C 0.182 3.818 19 C -0.493 4.493 20 H 0.094 0.906 21 C 0.061 3.939 22 N -0.794 5.794 23 Si 0.949 3.051 24 H -0.259 1.259 25 H -0.253 1.253 26 H -0.267 1.267 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.388 0.612 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 9.748 4.834 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.808 5.808 3 C 0.099 3.901 4 C -0.004 4.004 5 O -0.384 6.384 6 C -0.206 4.206 7 C -0.180 4.180 8 C -0.148 4.148 9 C -0.156 4.156 10 S 2.813 3.187 11 O -0.982 6.982 12 O -1.008 7.008 13 C -0.873 4.873 14 C -0.026 4.026 15 C -0.263 4.263 16 C -0.093 4.093 17 C -0.198 4.198 18 C 0.177 3.823 19 C -0.521 4.521 20 H 0.112 0.888 21 C -0.159 4.159 22 N -0.418 5.418 23 Si 0.770 3.230 24 H -0.183 1.183 25 H -0.176 1.176 26 H -0.191 1.191 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.124 0.876 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.764 8.916 4.850 10.178 hybrid contribution -0.548 0.167 -0.725 0.924 sum -1.313 9.083 4.124 10.061 Atomic orbital electron populations 1.21559 0.78516 1.03264 1.02129 1.56907 1.14406 1.19766 1.89676 1.20981 0.90984 0.83560 0.94619 1.22681 0.99437 0.91746 0.86563 1.86719 1.89162 1.43978 1.18586 1.23405 0.94858 1.05235 0.97139 1.22914 0.99104 1.00355 0.95677 1.22209 0.95810 0.98112 0.98685 1.22418 0.98718 0.99147 0.95365 1.00594 0.72101 0.72004 0.73957 1.93404 1.58313 1.86402 1.60047 1.93381 1.61866 1.57099 1.88444 1.30039 1.04113 1.33882 1.19219 1.20397 0.92193 0.92355 0.97665 1.20770 0.98929 1.14416 0.92164 1.21159 0.94087 0.96267 0.97781 1.21416 0.93888 1.06555 0.97979 1.17115 0.92682 0.82516 0.89972 1.20332 0.91724 1.33527 1.06561 0.88785 1.26393 1.04538 0.91838 0.93112 1.69806 1.40022 1.21606 1.10331 0.85630 0.77664 0.79912 0.79803 1.18300 1.17645 1.19148 0.92997 0.92017 0.88467 0.90765 0.91804 0.76354 0.89108 0.89829 0.89869 0.92323 0.93197 0.90111 0.91605 0.88689 0.86961 0.86003 0.86441 0.87561 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 8.43 127.77 1.08 4.16 16 2 N -0.97 -37.03 2.64 -491.21 -1.30 -38.32 16 3 C 0.19 6.01 0.69 4.33 0.00 6.01 16 4 C 0.08 1.87 5.56 71.98 0.40 2.27 16 5 O -0.58 -16.65 12.57 -146.38 -1.84 -18.49 16 6 C -0.17 -5.99 4.80 31.70 0.15 -5.84 16 7 C -0.14 -5.21 5.73 31.91 0.18 -5.03 16 8 C -0.11 -3.41 6.83 31.67 0.22 -3.19 16 9 C -0.12 -3.45 5.89 31.32 0.18 -3.26 16 10 S 2.71 126.03 4.41 -56.49 -0.25 125.78 16 11 O -0.99 -47.31 13.77 -124.91 -1.72 -49.03 16 12 O -1.02 -52.94 14.33 -128.00 -1.83 -54.78 16 13 C -0.78 -36.99 3.51 22.73 0.08 -36.91 16 14 C -0.01 -0.28 6.70 22.22 0.15 -0.13 16 15 C -0.24 -10.00 9.79 22.46 0.22 -9.78 16 16 C -0.07 -3.17 9.94 22.22 0.22 -2.95 16 17 C -0.18 -8.61 8.39 22.73 0.19 -8.42 16 18 C 0.18 9.05 4.48 -21.29 -0.10 8.95 16 19 C -0.49 -24.42 6.72 23.46 0.16 -24.27 16 20 H 0.09 4.88 5.06 -2.91 -0.01 4.87 16 21 C 0.06 2.74 5.22 85.26 0.44 3.18 16 22 N -0.79 -36.03 11.12 21.83 0.24 -35.79 16 23 Si 0.95 35.25 29.57 68.60 2.03 37.28 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 26 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 27 H 0.05 1.86 6.65 -2.38 -0.02 1.85 16 28 H 0.06 2.20 7.17 -2.39 -0.02 2.18 16 29 H 0.10 2.47 7.17 -2.39 -0.02 2.45 16 30 H 0.07 1.46 8.05 -2.38 -0.02 1.44 16 31 H 0.06 1.30 7.35 -2.39 -0.02 1.28 16 32 H 0.39 6.89 9.12 -74.05 -0.68 6.22 16 33 H 0.09 2.83 7.79 -2.39 -0.02 2.81 16 34 H 0.08 3.45 1.82 -17.86 -0.03 3.42 16 35 H 0.08 3.61 3.53 -2.38 -0.01 3.60 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 2.24 6.77 -2.39 -0.02 2.22 16 40 H 0.09 2.07 7.67 -2.39 -0.02 2.05 16 41 H 0.11 4.75 6.85 -2.91 -0.02 4.73 16 42 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 44 H 0.11 5.28 6.51 -2.91 -0.02 5.26 16 45 H 0.29 11.99 8.30 -92.71 -0.77 11.22 16 Total: -1.00 -64.18 342.76 -0.75 -64.93 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: 0.34 Total: 43.64 kcal Atomic # 6 Polarization: -78.79 SS G_CDS: 3.58 Total: -75.21 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.05 Total: -74.12 kcal Atomic # 8 Polarization: -116.91 SS G_CDS: -5.39 Total: -122.30 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Atomic # 16 Polarization: 126.03 SS G_CDS: -0.25 Total: 125.78 kcal Total: -64.18 -0.75 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464232785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.880 kcal (2) G-P(sol) polarization free energy of solvation -64.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds