Wall clock time and date at job start Tue Mar 31 2020 23:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35911 * 117.00378 * 2 1 4 4 C 1.38893 * 119.97174 * 0.02562 * 3 2 1 5 5 C 1.38290 * 120.29666 * 179.97438 * 4 3 2 6 6 C 1.37936 * 120.23185 * 359.97438 * 5 4 3 7 7 C 1.39841 * 119.94106 * 0.02562 * 6 5 4 8 8 C 1.47176 * 120.14754 * 180.02562 * 7 6 5 9 9 O 1.21248 * 120.00329 * 179.97438 * 8 7 6 10 10 C 1.50700 * 119.99956 * 359.95695 * 8 7 6 11 11 N 1.46497 * 109.47491 * 179.97438 * 10 8 7 12 12 C 1.34774 * 120.00242 * 180.02562 * 11 10 8 13 13 O 1.21547 * 120.00103 * 0.02562 * 12 11 10 14 14 C 1.47891 * 119.99964 * 180.02562 * 12 11 10 15 15 C 1.39926 * 120.02223 * 359.71726 * 14 12 11 16 16 C 1.38333 * 120.35255 * 179.74192 * 15 14 12 17 17 C 1.37751 * 120.41553 * 0.57035 * 16 15 14 18 18 C 1.40752 * 120.03436 * 359.68981 * 17 16 15 19 19 C 1.41439 * 120.17502 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00086 * 24.43125 * 19 18 17 21 21 C 1.39935 * 120.00106 * 204.44007 * 19 18 17 22 22 N 1.30834 * 120.00080 * 17.87837 * 21 19 18 23 23 Si 1.86797 * 119.99973 * 197.87860 * 21 19 18 24 24 H 1.48497 * 109.47140 * 89.99981 * 23 21 19 25 25 H 1.48507 * 109.47245 * 210.00027 * 23 21 19 26 26 H 1.48499 * 109.47115 * 329.99616 * 23 21 19 27 27 C 1.38990 * 120.02330 * 180.02562 * 14 12 11 28 28 C 1.38384 * 119.96957 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46876 * 59.99569 * 1 2 3 30 30 H 1.08995 * 109.47653 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47224 * 299.99983 * 1 2 3 32 32 H 1.08005 * 119.85138 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.88029 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.02729 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47649 * 300.00422 * 10 8 7 36 36 H 1.09001 * 109.46970 * 60.00004 * 10 8 7 37 37 H 0.97002 * 119.99901 * 0.02562 * 11 10 8 38 38 H 1.07994 * 119.82260 * 0.02562 * 15 14 12 39 39 H 1.07996 * 119.78752 * 180.27976 * 16 15 14 40 40 H 1.07996 * 119.98019 * 179.71613 * 17 16 15 41 41 H 0.96992 * 119.99700 * 180.02562 * 22 21 19 42 42 H 1.07991 * 120.20536 * 359.94414 * 27 14 12 43 43 H 1.08000 * 120.12343 * 359.72289 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2891 2.3755 0.0005 5 6 1.9100 3.6111 0.0011 6 6 3.2867 3.6966 0.0016 7 6 4.0584 2.5304 0.0011 8 6 5.5276 2.6163 0.0022 9 8 6.1942 1.6035 0.0022 10 6 6.2037 3.9632 0.0030 11 7 7.6572 3.7801 0.0047 12 6 8.4716 4.8539 0.0061 13 8 8.0003 5.9743 0.0065 14 6 9.9389 4.6691 0.0073 15 6 10.4821 3.3795 0.0128 16 6 11.8536 3.1987 0.0085 17 6 12.7003 4.2852 0.0106 18 6 12.1722 5.5899 0.0105 19 6 13.0388 6.7077 0.0121 20 1 14.0432 6.6129 -0.3736 21 6 12.5950 7.9365 0.5134 22 7 11.5405 7.9853 1.2863 23 14 13.5082 9.5071 0.0793 24 1 12.9333 10.0873 -1.1609 25 1 13.3725 10.4821 1.1911 26 1 14.9450 9.2005 -0.1375 27 6 10.7794 5.7761 0.0093 28 6 3.4280 1.2825 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2107 2.3157 0.0005 33 1 1.3148 4.5123 0.0019 34 1 3.7681 4.6633 0.0016 35 1 5.9081 4.5187 -0.8871 36 1 5.9067 4.5182 0.8929 37 1 8.0334 2.8861 0.0048 38 1 9.8271 2.5209 0.0158 39 1 12.2629 2.1993 0.0083 40 1 13.7699 4.1359 0.0119 41 1 11.2327 8.8370 1.6335 42 1 10.3645 6.7732 0.0092 43 1 4.0176 0.3777 0.0036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471458560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:24 Heat of formation + Delta-G solvation = -62.301616 kcal Electronic energy + Delta-G solvation = -27002.671731 eV Core-core repulsion = 22978.076513 eV Total energy + Delta-G solvation = -4024.595218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80295 -39.82952 -38.84202 -37.46176 -36.95980 -34.16040 -33.65824 -31.83010 -31.14644 -30.25040 -29.42267 -27.78573 -27.76992 -25.27371 -23.93388 -22.83155 -22.12806 -20.94669 -20.25268 -19.67874 -18.36628 -17.65289 -16.86357 -16.62056 -16.21582 -16.09294 -15.99003 -15.65109 -15.20581 -15.07732 -14.75193 -14.38499 -14.09905 -14.07007 -13.82441 -13.39325 -13.14512 -13.03513 -12.71584 -12.61514 -12.47108 -12.41938 -12.21603 -11.62254 -11.56132 -11.39263 -11.16028 -11.07214 -10.71097 -10.48598 -10.10707 -10.01979 -9.66975 -9.47051 -9.20717 -9.08287 -8.80271 -8.68335 -7.62204 -7.50092 -6.78799 -4.39735 0.23892 0.99637 2.05476 2.20350 2.72789 2.82964 3.08684 3.11895 3.17257 3.38093 3.38613 3.84622 3.91242 3.93164 4.30579 4.46221 4.58673 4.64494 4.66669 4.67367 4.82775 4.98586 5.01905 5.19460 5.33685 5.34781 5.48738 5.62544 5.75903 5.79186 5.90951 5.94012 6.12930 6.18388 6.32685 6.71475 6.73917 6.90649 6.99825 7.03022 7.18161 7.22991 7.39812 7.71662 7.76987 7.93986 8.07410 8.19745 8.51809 8.81227 8.84533 8.89573 10.16068 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.001962 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.661929 B =14266.984616 C =15321.104490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.114 3.886 4 C -0.179 4.179 5 C -0.091 4.091 6 C -0.107 4.107 7 C -0.125 4.125 8 C 0.393 3.607 9 O -0.440 6.440 10 C 0.078 3.922 11 N -0.733 5.733 12 C 0.568 3.432 13 O -0.546 6.546 14 C -0.129 4.129 15 C -0.215 4.215 16 C -0.098 4.098 17 C -0.210 4.210 18 C 0.097 3.903 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.784 5.784 23 Si 0.911 3.089 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.091 4.091 28 C -0.092 4.092 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.409 0.591 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.284 0.716 42 H 0.135 0.865 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.059 -9.461 -1.787 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.069 3.931 4 C -0.197 4.197 5 C -0.109 4.109 6 C -0.126 4.126 7 C -0.127 4.127 8 C 0.270 3.730 9 O -0.314 6.314 10 C -0.047 4.047 11 N -0.390 5.390 12 C 0.359 3.641 13 O -0.424 6.424 14 C -0.132 4.132 15 C -0.236 4.236 16 C -0.116 4.116 17 C -0.230 4.230 18 C 0.095 3.905 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.146 4.146 22 N -0.408 5.408 23 Si 0.735 3.265 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.111 4.111 28 C -0.111 4.111 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.247 0.753 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.152 0.848 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.107 -9.225 -1.630 24.010 hybrid contribution 0.041 0.417 -0.039 0.421 sum -22.066 -8.808 -1.669 23.818 Atomic orbital electron populations 1.23094 0.78136 1.04239 1.01398 1.86109 1.21544 1.26493 1.88778 1.18866 0.92047 0.84522 0.97709 1.21518 1.00394 0.92388 1.05437 1.20950 0.94469 0.97274 0.98201 1.21482 0.93937 0.98106 0.99031 1.20139 0.94387 0.93531 1.04629 1.22588 0.88211 0.90825 0.71396 1.90535 1.66956 1.38419 1.35447 1.21451 0.82989 0.95401 1.04867 1.45796 1.04284 1.10981 1.77938 1.18851 0.87546 0.83325 0.74371 1.90691 1.77533 1.24127 1.50082 1.19416 0.89941 0.95142 1.08711 1.20406 0.94821 0.94171 1.14160 1.20448 0.93227 0.97078 1.00848 1.21114 0.97705 0.92663 1.11511 1.17605 0.91904 0.92149 0.88866 1.19590 1.00022 0.93295 1.35995 0.90055 1.25966 0.94852 1.01139 0.92638 1.69795 1.21061 1.28412 1.21573 0.86266 0.80622 0.80460 0.79132 1.19163 1.20253 1.18587 1.21632 0.92742 0.97536 0.99189 1.20635 0.91516 0.98358 1.00552 0.92524 0.88015 0.92512 0.84981 0.84780 0.84234 0.87928 0.87901 0.75263 0.89014 0.88811 0.88569 0.90469 0.84761 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.82 10.49 -19.46 -0.20 -3.02 16 3 C 0.11 1.07 6.68 -39.29 -0.26 0.81 16 4 C -0.18 -1.31 9.04 -39.32 -0.36 -1.67 16 5 C -0.09 -0.65 10.02 -39.67 -0.40 -1.05 16 6 C -0.11 -0.91 9.47 -39.09 -0.37 -1.28 16 7 C -0.13 -1.33 5.87 -105.08 -0.62 -1.95 16 8 C 0.39 4.94 7.19 -30.68 -0.22 4.72 16 9 O -0.44 -6.63 15.66 5.59 0.09 -6.54 16 10 C 0.08 1.05 4.76 -5.19 -0.02 1.03 16 11 N -0.73 -12.79 5.48 -62.42 -0.34 -13.13 16 12 C 0.57 12.51 7.77 -12.31 -0.10 12.41 16 13 O -0.55 -13.34 16.33 5.32 0.09 -13.25 16 14 C -0.13 -3.10 5.87 -105.03 -0.62 -3.72 16 15 C -0.22 -4.72 9.55 -38.91 -0.37 -5.09 16 16 C -0.10 -2.15 10.01 -39.72 -0.40 -2.54 16 17 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 18 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 19 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 20 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 21 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 22 N -0.78 -20.76 10.95 55.55 0.61 -20.15 16 23 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 27 C -0.09 -2.44 8.24 -38.44 -0.32 -2.76 16 28 C -0.09 -0.99 9.54 -38.94 -0.37 -1.36 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 32 H 0.13 0.63 6.28 -52.48 -0.33 0.30 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.14 0.98 7.04 -52.49 -0.37 0.61 16 35 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 36 H 0.10 1.29 8.09 -51.93 -0.42 0.87 16 37 H 0.41 6.89 5.45 -40.82 -0.22 6.67 16 38 H 0.09 1.74 6.38 -52.49 -0.33 1.41 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 42 H 0.13 3.86 5.74 -52.49 -0.30 3.56 16 43 H 0.14 1.60 7.65 -52.49 -0.40 1.20 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -32.14 371.72 -8.86 -41.00 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.83 Total: 11.23 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -4.83 Total: -15.50 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.27 Total: -33.29 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.03 Total: -22.82 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.14 -8.86 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471458560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.307 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds