Wall clock time and date at job start Tue Mar 31 2020 23:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47083 * 263.37530 * 3 2 1 5 5 C 1.36865 * 120.00362 * 274.37356 * 4 3 2 6 6 H 1.08001 * 120.00471 * 138.31286 * 5 4 3 7 7 C 1.39047 * 120.00135 * 318.31716 * 5 4 3 8 8 N 1.31366 * 120.00128 * 164.94847 * 7 5 4 9 9 Si 1.86804 * 119.99741 * 344.94260 * 7 5 4 10 10 H 1.48504 * 109.46713 * 89.87134 * 9 7 5 11 11 H 1.48489 * 109.47143 * 209.87180 * 9 7 5 12 12 H 1.48496 * 109.47189 * 329.87422 * 9 7 5 13 13 C 1.34775 * 119.99758 * 94.37731 * 4 3 2 14 14 O 1.21624 * 120.00094 * 185.45115 * 13 4 3 15 15 C 1.47565 * 120.00448 * 5.44559 * 13 4 3 16 16 C 1.40721 * 119.76096 * 130.43062 * 15 13 4 17 17 C 1.35694 * 120.82309 * 180.25691 * 16 15 13 18 18 C 1.40753 * 120.04981 * 359.46366 * 17 16 15 19 19 C 1.40407 * 120.91613 * 180.24375 * 18 17 16 20 20 C 1.36520 * 119.77666 * 180.28567 * 19 18 17 21 21 O 1.35864 * 119.58325 * 180.02562 * 20 19 18 22 22 C 1.42897 * 117.00078 * 359.97438 * 21 20 19 23 23 C 1.40355 * 120.83675 * 0.02562 * 20 19 18 24 24 O 1.35929 * 119.61125 * 179.97438 * 23 20 19 25 25 C 1.42908 * 117.00015 * 180.02562 * 24 23 20 26 26 C 1.36364 * 120.78029 * 359.95778 * 23 20 19 27 27 C 1.40731 * 119.69962 * 0.04363 * 26 23 20 28 28 C 1.38669 * 119.75441 * 310.41840 * 15 13 4 29 29 H 4.40636 * 5.51484 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.46903 * 143.38052 * 3 2 1 31 31 H 1.09002 * 109.47615 * 23.38337 * 3 2 1 32 32 H 0.96993 * 119.99933 * 179.97438 * 8 7 5 33 33 H 1.08002 * 119.59242 * 359.97438 * 16 15 13 34 34 H 1.07996 * 119.97359 * 179.70142 * 17 16 15 35 35 H 1.08003 * 120.11223 * 0.31284 * 19 18 17 36 36 H 1.09002 * 109.47374 * 299.99907 * 22 21 20 37 37 H 1.08992 * 109.46840 * 60.00639 * 22 21 20 38 38 H 1.09007 * 109.46922 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.47247 * 59.99905 * 25 24 23 40 40 H 1.09000 * 109.46622 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.46738 * 299.99600 * 25 24 23 42 42 H 1.07993 * 120.15241 * 180.02562 * 26 23 20 43 43 H 1.07995 * 120.27230 * 0.03243 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.1602 1.3720 5 6 3.2765 1.4121 1.9065 6 1 2.9748 1.6015 2.9261 7 6 3.8095 2.4402 1.1369 8 7 3.6789 3.6880 1.5265 9 14 4.7115 2.0471 -0.4510 10 1 3.7455 2.0346 -1.5789 11 1 5.7492 3.0797 -0.6995 12 1 5.3566 0.7144 -0.3370 13 6 3.4433 -0.9258 2.1078 14 8 3.7533 -0.8000 3.2771 15 6 3.4054 -2.2676 1.4948 16 6 4.5014 -3.1368 1.6481 17 6 4.4917 -4.3733 1.0893 18 6 3.3717 -4.8060 0.3548 19 6 3.3401 -6.0836 -0.2267 20 6 2.2442 -6.4772 -0.9393 21 8 2.2176 -7.7145 -1.4999 22 6 3.3662 -8.5412 -1.3021 23 6 1.1446 -5.6199 -1.1002 24 8 0.0665 -6.0373 -1.8151 25 6 -1.0213 -5.1195 -1.9440 26 6 1.1449 -4.3734 -0.5473 27 6 2.2603 -3.9391 0.1928 28 6 2.2897 -2.6629 0.7723 29 1 -1.0501 0.0002 0.0000 30 1 3.0089 0.8257 -0.6130 31 1 3.0098 -0.9424 -0.4079 32 1 4.0510 4.4051 0.9898 33 1 5.3631 -2.8140 2.2136 34 1 5.3423 -5.0273 1.2116 35 1 4.1797 -6.7528 -0.1103 36 1 4.2444 -8.0492 -1.7202 37 1 3.5156 -8.7064 -0.2352 38 1 3.2149 -9.4987 -1.8007 39 1 -0.6747 -4.2125 -2.4393 40 1 -1.8142 -5.5768 -2.5359 41 1 -1.4048 -4.8695 -0.9549 42 1 0.2932 -3.7222 -0.6771 43 1 1.4506 -1.9930 0.6566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524272499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:17 Heat of formation + Delta-G solvation = 24.461029 kcal Electronic energy + Delta-G solvation = -28978.995296 eV Core-core repulsion = 24958.162388 eV Total energy + Delta-G solvation = -4020.832907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.06345 -39.60958 -38.72884 -38.14680 -35.53463 -34.75572 -32.95149 -32.23917 -31.71197 -30.16790 -28.90729 -27.67778 -27.45614 -26.84656 -25.25481 -23.07864 -22.72280 -21.90110 -19.91954 -18.70637 -18.43620 -18.13791 -17.28013 -16.77349 -16.30749 -16.25011 -15.96312 -15.61567 -15.47033 -14.93664 -14.86508 -14.73927 -14.48781 -13.85931 -13.55929 -13.39547 -13.21851 -13.09666 -12.70158 -12.68791 -12.38210 -12.27365 -12.07241 -11.92139 -11.73713 -11.44475 -11.35073 -11.12397 -10.94465 -10.67606 -10.31281 -10.12079 -9.89144 -9.81392 -9.53515 -9.18404 -8.72103 -7.97445 -7.88153 -7.72544 -6.47170 -4.12101 0.46178 1.01085 2.00802 2.78194 2.93349 3.01139 3.06382 3.08488 3.13417 3.15735 3.26076 3.65966 4.04267 4.13353 4.39993 4.49211 4.72644 4.76683 4.84904 4.91197 4.93388 4.99007 5.00130 5.00405 5.07218 5.10104 5.24133 5.33026 5.36441 5.40563 5.48498 5.56120 5.69615 5.87720 5.89549 5.96854 6.13804 6.21730 6.32538 6.51657 6.57057 6.68735 6.84516 6.98256 7.37134 7.44413 7.99448 8.17239 8.36415 8.80589 9.15973 9.58443 10.64036 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.003540 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.664132 B = 7908.789804 C = 8775.327760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C 0.181 3.819 4 N -0.453 5.453 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.063 3.937 8 N -0.860 5.860 9 Si 0.872 3.128 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.509 3.491 14 O -0.547 6.547 15 C -0.100 4.100 16 C -0.071 4.071 17 C -0.116 4.116 18 C -0.036 4.036 19 C -0.179 4.179 20 C 0.117 3.883 21 O -0.307 6.307 22 C 0.025 3.975 23 C 0.112 3.888 24 O -0.308 6.308 25 C 0.024 3.976 26 C -0.170 4.170 27 C -0.044 4.044 28 C -0.094 4.094 29 H 0.215 0.785 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.277 0.723 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.141 0.859 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -20.462 -10.076 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C 0.058 3.942 4 N -0.174 5.174 5 C -0.441 4.441 6 H 0.126 0.874 7 C -0.143 4.143 8 N -0.495 5.495 9 Si 0.700 3.300 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.183 1.183 13 C 0.298 3.702 14 O -0.428 6.428 15 C -0.104 4.104 16 C -0.090 4.090 17 C -0.134 4.134 18 C -0.037 4.037 19 C -0.198 4.198 20 C 0.072 3.928 21 O -0.221 6.221 22 C -0.070 4.070 23 C 0.067 3.933 24 O -0.222 6.222 25 C -0.071 4.071 26 C -0.189 4.189 27 C -0.044 4.044 28 C -0.113 4.113 29 H 0.232 0.768 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.159 0.841 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.906 -20.418 -9.696 22.938 hybrid contribution 0.338 0.343 -0.741 0.884 sum -3.568 -20.075 -10.436 22.906 Atomic orbital electron populations 1.24735 0.95627 1.02373 1.00563 1.23566 0.94771 0.98848 1.00028 1.19132 0.84301 1.02846 0.87884 1.43564 1.56321 1.06383 1.11112 1.19054 1.41457 0.82384 1.01255 0.87375 1.25412 0.95673 0.94861 0.98393 1.69651 1.41827 0.98772 1.39272 0.87049 0.80368 0.79629 0.82995 1.19663 1.20833 1.18278 1.18229 0.81050 0.83529 0.87359 1.90688 1.50577 1.85844 1.15681 1.20303 0.95290 0.96029 0.98745 1.20802 0.97725 0.92842 0.97623 1.20761 0.97371 0.96440 0.98821 1.17780 0.94393 0.93090 0.98424 1.20833 0.98300 0.97682 1.03017 1.17976 0.92957 0.85258 0.96615 1.86134 1.41325 1.23314 1.71296 1.23089 0.87712 0.94370 1.01849 1.17901 0.87185 0.92201 0.96014 1.86136 1.24961 1.42535 1.68535 1.23111 0.88062 0.93904 1.02054 1.20931 1.00235 0.95227 1.02488 1.17654 0.93599 0.94224 0.98940 1.21825 0.98478 0.95016 0.95937 0.76794 0.89174 0.88678 0.91291 0.85138 0.85400 0.84283 0.92541 0.92539 0.88226 0.92386 0.88184 0.92459 0.84102 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.47 19.03 29.55 0.56 -2.91 16 2 C -0.17 -3.28 11.14 -37.12 -0.41 -3.69 16 3 C 0.18 3.77 4.32 -6.83 -0.03 3.75 16 4 N -0.45 -11.16 2.10 -119.11 -0.25 -11.41 16 5 C -0.31 -8.90 9.32 -15.00 -0.14 -9.04 16 6 H 0.11 3.44 7.94 -52.49 -0.42 3.02 16 7 C 0.06 1.74 5.41 -17.45 -0.09 1.65 16 8 N -0.86 -24.64 13.95 55.50 0.77 -23.86 16 9 Si 0.87 20.05 24.95 -169.99 -4.24 15.81 16 10 H -0.27 -5.75 6.55 56.52 0.37 -5.38 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.51 12.28 7.15 -12.46 -0.09 12.19 16 14 O -0.55 -15.12 16.93 5.26 0.09 -15.03 16 15 C -0.10 -1.94 4.92 -105.00 -0.52 -2.46 16 16 C -0.07 -1.19 9.61 -39.55 -0.38 -1.57 16 17 C -0.12 -1.59 9.72 -39.54 -0.38 -1.98 16 18 C -0.04 -0.51 5.75 -106.74 -0.61 -1.13 16 19 C -0.18 -2.14 8.72 -39.39 -0.34 -2.48 16 20 C 0.12 1.50 6.67 -39.41 -0.26 1.24 16 21 O -0.31 -3.61 10.25 -34.28 -0.35 -3.96 16 22 C 0.02 0.18 9.80 101.05 0.99 1.17 16 23 C 0.11 1.48 6.67 -39.46 -0.26 1.22 16 24 O -0.31 -3.80 10.25 -34.48 -0.35 -4.15 16 25 C 0.02 0.20 9.80 101.05 0.99 1.19 16 26 C -0.17 -2.25 8.73 -39.32 -0.34 -2.59 16 27 C -0.04 -0.66 5.74 -106.83 -0.61 -1.28 16 28 C -0.09 -1.61 7.28 -38.69 -0.28 -1.89 16 29 H 0.22 2.48 7.80 -54.09 -0.42 2.06 16 30 H 0.09 1.95 2.91 -51.93 -0.15 1.80 16 31 H 0.10 1.76 5.53 -51.93 -0.29 1.47 16 32 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 1.25 6.18 -52.48 -0.32 0.92 16 36 H 0.06 0.35 7.63 -51.93 -0.40 -0.05 16 37 H 0.06 0.35 7.63 -51.93 -0.40 -0.05 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.44 7.63 -51.93 -0.40 0.05 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.43 7.63 -51.93 -0.40 0.04 16 42 H 0.14 1.59 6.18 -52.49 -0.32 1.26 16 43 H 0.14 2.38 4.60 -52.49 -0.24 2.14 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -34.38 361.34 -5.72 -40.10 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.61 Total: 5.67 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.23 Total: -8.61 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.52 Total: -35.27 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.62 Total: -23.14 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.24 Total: 15.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.38 -5.72 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524272499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.562 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds