Wall clock time and date at job start Tue Mar 31 2020 23:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47083 * 263.37530 * 3 2 1 5 5 C 1.36865 * 120.00362 * 274.37356 * 4 3 2 6 6 H 1.08001 * 120.00471 * 138.31286 * 5 4 3 7 7 C 1.39047 * 120.00135 * 318.31716 * 5 4 3 8 8 N 1.31366 * 120.00128 * 164.94847 * 7 5 4 9 9 Si 1.86804 * 119.99741 * 344.94260 * 7 5 4 10 10 H 1.48504 * 109.46713 * 89.87134 * 9 7 5 11 11 H 1.48489 * 109.47143 * 209.87180 * 9 7 5 12 12 H 1.48496 * 109.47189 * 329.87422 * 9 7 5 13 13 C 1.34775 * 119.99758 * 94.37731 * 4 3 2 14 14 O 1.21624 * 120.00094 * 185.45115 * 13 4 3 15 15 C 1.47565 * 120.00448 * 5.44559 * 13 4 3 16 16 C 1.40721 * 119.76096 * 130.43062 * 15 13 4 17 17 C 1.35694 * 120.82309 * 180.25691 * 16 15 13 18 18 C 1.40753 * 120.04981 * 359.46366 * 17 16 15 19 19 C 1.40407 * 120.91613 * 180.24375 * 18 17 16 20 20 C 1.36520 * 119.77666 * 180.28567 * 19 18 17 21 21 O 1.35864 * 119.58325 * 180.02562 * 20 19 18 22 22 C 1.42897 * 117.00078 * 359.97438 * 21 20 19 23 23 C 1.40355 * 120.83675 * 0.02562 * 20 19 18 24 24 O 1.35929 * 119.61125 * 179.97438 * 23 20 19 25 25 C 1.42908 * 117.00015 * 180.02562 * 24 23 20 26 26 C 1.36364 * 120.78029 * 359.95778 * 23 20 19 27 27 C 1.40731 * 119.69962 * 0.04363 * 26 23 20 28 28 C 1.38669 * 119.75441 * 310.41840 * 15 13 4 29 29 H 4.40636 * 5.51484 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.46903 * 143.38052 * 3 2 1 31 31 H 1.09002 * 109.47615 * 23.38337 * 3 2 1 32 32 H 0.96993 * 119.99933 * 179.97438 * 8 7 5 33 33 H 1.08002 * 119.59242 * 359.97438 * 16 15 13 34 34 H 1.07996 * 119.97359 * 179.70142 * 17 16 15 35 35 H 1.08003 * 120.11223 * 0.31284 * 19 18 17 36 36 H 1.09002 * 109.47374 * 299.99907 * 22 21 20 37 37 H 1.08992 * 109.46840 * 60.00639 * 22 21 20 38 38 H 1.09007 * 109.46922 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.47247 * 59.99905 * 25 24 23 40 40 H 1.09000 * 109.46622 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.46738 * 299.99600 * 25 24 23 42 42 H 1.07993 * 120.15241 * 180.02562 * 26 23 20 43 43 H 1.07995 * 120.27230 * 0.03243 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.1602 1.3720 5 6 3.2765 1.4121 1.9065 6 1 2.9748 1.6015 2.9261 7 6 3.8095 2.4402 1.1369 8 7 3.6789 3.6880 1.5265 9 14 4.7115 2.0471 -0.4510 10 1 3.7455 2.0346 -1.5789 11 1 5.7492 3.0797 -0.6995 12 1 5.3566 0.7144 -0.3370 13 6 3.4433 -0.9258 2.1078 14 8 3.7533 -0.8000 3.2771 15 6 3.4054 -2.2676 1.4948 16 6 4.5014 -3.1368 1.6481 17 6 4.4917 -4.3733 1.0893 18 6 3.3717 -4.8060 0.3548 19 6 3.3401 -6.0836 -0.2267 20 6 2.2442 -6.4772 -0.9393 21 8 2.2176 -7.7145 -1.4999 22 6 3.3662 -8.5412 -1.3021 23 6 1.1446 -5.6199 -1.1002 24 8 0.0665 -6.0373 -1.8151 25 6 -1.0213 -5.1195 -1.9440 26 6 1.1449 -4.3734 -0.5473 27 6 2.2603 -3.9391 0.1928 28 6 2.2897 -2.6629 0.7723 29 1 -1.0501 0.0002 0.0000 30 1 3.0089 0.8257 -0.6130 31 1 3.0098 -0.9424 -0.4079 32 1 4.0510 4.4051 0.9898 33 1 5.3631 -2.8140 2.2136 34 1 5.3423 -5.0273 1.2116 35 1 4.1797 -6.7528 -0.1103 36 1 4.2444 -8.0492 -1.7202 37 1 3.5156 -8.7064 -0.2352 38 1 3.2149 -9.4987 -1.8007 39 1 -0.6747 -4.2125 -2.4393 40 1 -1.8142 -5.5768 -2.5359 41 1 -1.4048 -4.8695 -0.9549 42 1 0.2932 -3.7222 -0.6771 43 1 1.4506 -1.9930 0.6566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524272499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:16 Heat of formation + Delta-G solvation = 2.168990 kcal Electronic energy + Delta-G solvation = -28979.961951 eV Core-core repulsion = 24958.162388 eV Total energy + Delta-G solvation = -4021.799563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10182 -41.09691 -39.55534 -39.44905 -37.36978 -35.91018 -34.69400 -33.49005 -33.41314 -31.18995 -30.05147 -28.54829 -28.49662 -28.08335 -27.03702 -24.38727 -23.81905 -22.89920 -21.47330 -20.30915 -19.42333 -19.25367 -18.65787 -18.37186 -17.82769 -17.44786 -17.09211 -16.71067 -16.38333 -16.28717 -16.17680 -15.83071 -15.40430 -15.31780 -15.02460 -14.98956 -14.42813 -14.26882 -14.20421 -14.16255 -13.95490 -13.43025 -13.03932 -12.97543 -12.87705 -12.66637 -12.53022 -12.26479 -12.12995 -12.08777 -11.89059 -11.47554 -11.36585 -11.13032 -11.00409 -10.82845 -10.55898 -9.98024 -8.93222 -8.81600 -8.57905 -6.30532 -0.63078 -0.13318 0.89541 1.11263 1.24137 1.36023 1.50646 1.71707 1.83278 2.03342 2.09848 2.23930 2.28240 2.72146 2.83949 3.01765 3.46795 3.53632 3.68335 3.87742 3.97569 3.99773 4.09214 4.11769 4.19239 4.28689 4.30818 4.40438 4.41766 4.46380 4.52693 4.57616 4.75043 4.77006 4.83405 4.85674 4.98995 5.05492 5.15459 5.36938 5.40032 5.48495 5.51933 5.82647 5.94091 6.04175 6.40094 6.51173 6.64333 6.76176 7.09102 7.63988 8.58444 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.003540 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.664132 B = 7908.789804 C = 8775.327760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.236 4.236 3 C 0.185 3.815 4 N -0.463 5.463 5 C -0.335 4.335 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.906 5.906 9 Si 0.938 3.062 10 H -0.237 1.237 11 H -0.276 1.276 12 H -0.253 1.253 13 C 0.506 3.494 14 O -0.602 6.602 15 C -0.128 4.128 16 C -0.095 4.095 17 C -0.091 4.091 18 C -0.041 4.041 19 C -0.172 4.172 20 C 0.116 3.884 21 O -0.323 6.323 22 C 0.013 3.987 23 C 0.111 3.889 24 O -0.321 6.321 25 C 0.014 3.986 26 C -0.175 4.175 27 C -0.055 4.055 28 C -0.086 4.086 29 H 0.261 0.739 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.284 0.716 33 H 0.124 0.876 34 H 0.169 0.831 35 H 0.174 0.826 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.064 0.936 42 H 0.156 0.844 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 -24.210 -13.516 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.237 4.237 3 C 0.063 3.937 4 N -0.182 5.182 5 C -0.463 4.463 6 H 0.065 0.935 7 C -0.185 4.185 8 N -0.543 5.543 9 Si 0.761 3.239 10 H -0.162 1.162 11 H -0.202 1.202 12 H -0.176 1.176 13 C 0.297 3.703 14 O -0.486 6.486 15 C -0.131 4.131 16 C -0.114 4.114 17 C -0.108 4.108 18 C -0.042 4.042 19 C -0.191 4.191 20 C 0.070 3.930 21 O -0.236 6.236 22 C -0.081 4.081 23 C 0.065 3.935 24 O -0.235 6.235 25 C -0.080 4.080 26 C -0.194 4.194 27 C -0.056 4.056 28 C -0.105 4.105 29 H 0.277 0.723 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.187 0.813 35 H 0.191 0.809 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.174 0.826 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.506 -24.185 -13.170 27.905 hybrid contribution 0.303 1.246 0.310 1.320 sum -4.203 -22.939 -12.860 26.631 Atomic orbital electron populations 1.25762 0.96419 0.99135 0.97001 1.23523 0.95109 1.01879 1.03185 1.19096 0.85927 1.03465 0.85165 1.43609 1.56871 1.05107 1.12659 1.18616 1.43281 0.84898 0.99514 0.93476 1.26176 0.95684 0.94091 1.02505 1.69768 1.43036 0.99956 1.41499 0.86005 0.79425 0.79597 0.78915 1.16223 1.20174 1.17641 1.19054 0.79184 0.85359 0.86678 1.90624 1.52732 1.87129 1.18144 1.19940 0.97863 0.93958 1.01359 1.20808 0.97132 0.94053 0.99408 1.21093 0.98240 0.95182 0.96331 1.18051 0.93994 0.93872 0.98273 1.21072 0.99147 0.96979 1.01871 1.18202 0.92892 0.85802 0.96138 1.86133 1.43495 1.22969 1.71051 1.23452 0.86828 0.94629 1.03218 1.18134 0.87733 0.92150 0.95454 1.86133 1.25422 1.43844 1.68110 1.23414 0.87519 0.94022 1.03074 1.21006 1.00228 0.95748 1.02414 1.17762 0.94926 0.93526 0.99363 1.21746 0.97434 0.95961 0.95359 0.72288 0.90058 0.86555 0.90653 0.85789 0.81348 0.80905 0.91187 0.91249 0.86220 0.91643 0.85896 0.91733 0.82606 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.98 19.03 74.32 1.41 -3.57 16 2 C -0.24 -8.93 11.14 31.12 0.35 -8.58 16 3 C 0.18 7.79 4.32 84.57 0.37 8.15 16 4 N -0.46 -24.01 2.10 -649.01 -1.36 -25.37 16 5 C -0.34 -20.45 9.32 84.10 0.78 -19.66 16 6 H 0.05 3.35 7.94 -2.91 -0.02 3.32 16 7 C 0.02 1.07 5.41 84.96 0.46 1.53 16 8 N -0.91 -54.60 13.95 21.68 0.30 -54.30 16 9 Si 0.94 42.07 24.95 68.60 1.71 43.78 16 10 H -0.24 -9.36 6.55 99.48 0.65 -8.71 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.25 -10.99 7.11 99.48 0.71 -10.29 16 13 C 0.51 25.99 7.15 86.70 0.62 26.61 16 14 O -0.60 -36.12 16.93 -4.11 -0.07 -36.19 16 15 C -0.13 -5.09 4.92 -20.11 -0.10 -5.19 16 16 C -0.10 -3.18 9.61 22.29 0.21 -2.96 16 17 C -0.09 -2.25 9.72 22.30 0.22 -2.04 16 18 C -0.04 -1.04 5.75 -21.24 -0.12 -1.17 16 19 C -0.17 -3.38 8.72 22.40 0.20 -3.19 16 20 C 0.12 2.54 6.67 22.38 0.15 2.69 16 21 O -0.32 -6.38 10.25 -77.71 -0.80 -7.18 16 22 C 0.01 0.13 9.80 113.37 1.11 1.24 16 23 C 0.11 2.61 6.67 22.35 0.15 2.76 16 24 O -0.32 -6.98 10.25 -78.44 -0.80 -7.78 16 25 C 0.01 0.19 9.80 113.37 1.11 1.30 16 26 C -0.18 -4.20 8.73 22.44 0.20 -4.00 16 27 C -0.06 -1.57 5.74 -21.29 -0.12 -1.70 16 28 C -0.09 -2.93 7.28 22.85 0.17 -2.76 16 29 H 0.26 4.88 7.80 -4.41 -0.03 4.85 16 30 H 0.08 3.49 2.91 -2.39 -0.01 3.48 16 31 H 0.12 4.27 5.53 -2.39 -0.01 4.26 16 32 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.17 2.13 6.18 -2.91 -0.02 2.11 16 36 H 0.07 0.53 7.63 -2.39 -0.02 0.51 16 37 H 0.07 0.53 7.63 -2.39 -0.02 0.51 16 38 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.06 0.80 7.63 -2.39 -0.02 0.78 16 40 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 0.78 7.63 -2.39 -0.02 0.76 16 42 H 0.16 3.11 6.18 -2.91 -0.02 3.09 16 43 H 0.14 4.61 4.60 -2.91 -0.01 4.60 16 Total: -1.00 -83.35 361.34 7.15 -76.20 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.01 Total: 21.37 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 7.16 Total: -10.53 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -1.06 Total: -79.67 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -1.67 Total: -51.15 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.71 Total: 43.78 kcal Total: -83.35 7.15 -76.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524272499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.371 kcal (2) G-P(sol) polarization free energy of solvation -83.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds