Wall clock time and date at job start Tue Mar 31 2020 23:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35583 * 116.99804 * 2 1 4 4 C 1.38685 * 120.17716 * 0.26180 * 3 2 1 5 5 C 1.38062 * 120.10867 * 180.30176 * 4 3 2 6 6 C 1.38704 * 120.46881 * 359.68940 * 5 4 3 7 7 C 1.37626 * 120.34391 * 0.02968 * 6 5 4 8 8 C 1.40074 * 119.88024 * 359.97438 * 7 6 5 9 9 C 1.47023 * 120.22207 * 179.97438 * 8 7 6 10 10 O 1.21406 * 119.99451 * 184.01839 * 9 8 7 11 11 C 1.49280 * 120.00390 * 4.01932 * 9 8 7 12 12 O 1.21373 * 119.99481 * 5.66407 * 11 9 8 13 13 N 1.34776 * 120.00004 * 185.66396 * 11 9 8 14 14 C 1.46502 * 119.99699 * 179.97438 * 13 11 9 15 15 C 1.50702 * 109.46792 * 180.02562 * 14 13 11 16 16 C 1.38636 * 119.75030 * 269.72622 * 15 14 13 17 17 C 1.37618 * 120.24792 * 179.71864 * 16 15 14 18 18 C 1.40724 * 119.74052 * 0.57837 * 17 16 15 19 19 C 1.41399 * 120.24025 * 179.67664 * 18 17 16 20 20 H 1.07997 * 119.99940 * 151.30794 * 19 18 17 21 21 C 1.39946 * 119.99799 * 331.31133 * 19 18 17 22 22 N 1.30820 * 120.00069 * 349.73108 * 21 19 18 23 23 Si 1.86808 * 119.99469 * 169.73419 * 21 19 18 24 24 H 1.48501 * 109.46863 * 94.51396 * 23 21 19 25 25 H 1.48500 * 109.46994 * 214.51164 * 23 21 19 26 26 H 1.48498 * 109.47117 * 334.50839 * 23 21 19 27 27 C 1.40709 * 119.51195 * 359.69911 * 18 17 16 28 28 C 1.37617 * 119.75046 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.46851 * 299.99358 * 1 2 3 30 30 H 1.08995 * 109.47456 * 59.99576 * 1 2 3 31 31 H 1.09004 * 109.46800 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.94225 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.76451 * 179.72272 * 5 4 3 34 34 H 1.07999 * 119.82442 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.05400 * 180.02562 * 7 6 5 36 36 H 0.97002 * 119.99727 * 0.02562 * 13 11 9 37 37 H 1.08999 * 109.46866 * 60.00783 * 14 13 11 38 38 H 1.09001 * 109.47038 * 300.00288 * 14 13 11 39 39 H 1.07997 * 119.87079 * 359.97438 * 16 15 14 40 40 H 1.07991 * 120.13121 * 180.27892 * 17 16 15 41 41 H 0.97010 * 119.99475 * 179.97438 * 22 21 19 42 42 H 1.08010 * 120.12269 * 179.97438 * 27 18 17 43 43 H 1.07992 * 119.87696 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2928 2.3735 0.0055 5 6 1.9209 3.6029 -0.0008 6 6 3.3055 3.6852 -0.0062 7 6 4.0701 2.5409 -0.0059 8 6 3.4479 1.2859 0.0004 9 6 4.2573 0.0586 0.0002 10 8 3.7156 -1.0257 -0.0681 11 6 5.7452 0.1457 0.0839 12 8 6.2814 1.2209 0.2555 13 7 6.4931 -0.9697 -0.0311 14 6 7.9533 -0.8841 0.0505 15 6 8.5467 -2.2603 -0.1077 16 6 8.7658 -3.0479 1.0119 17 6 9.3018 -4.3084 0.8787 18 6 9.6390 -4.7921 -0.3991 19 6 10.1967 -6.0830 -0.5475 20 1 10.0366 -6.6388 -1.4595 21 6 10.9562 -6.6403 0.4875 22 7 11.3199 -5.9007 1.5034 23 14 11.4505 -8.4405 0.4181 24 1 12.8061 -8.5589 -0.1767 25 1 11.4619 -9.0039 1.7920 26 1 10.4767 -9.1895 -0.4160 27 6 9.4176 -3.9816 -1.5277 28 6 8.8742 -2.7269 -1.3715 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2142 2.3192 0.0102 33 1 1.3301 4.5069 -0.0010 34 1 3.7861 4.6524 -0.0107 35 1 5.1478 2.6105 -0.0096 36 1 6.0644 -1.8289 -0.1686 37 1 8.2396 -0.4738 1.0189 38 1 8.3241 -0.2354 -0.7430 39 1 8.5110 -2.6724 1.9919 40 1 9.4675 -4.9221 1.7517 41 1 11.8460 -6.2872 2.2209 42 1 9.6732 -4.3428 -2.5130 43 1 8.7038 -2.1030 -2.2363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530275159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:32 Heat of formation + Delta-G solvation = -55.283502 kcal Electronic energy + Delta-G solvation = -27293.881938 eV Core-core repulsion = 23269.591049 eV Total energy + Delta-G solvation = -4024.290890 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94899 -39.74070 -38.21058 -37.70974 -37.49284 -34.89811 -33.46486 -31.68370 -30.42999 -30.38857 -29.38523 -27.83605 -27.27597 -25.57101 -23.84451 -22.60568 -21.98838 -21.09286 -20.24491 -19.96136 -18.27095 -17.69552 -17.38496 -16.83373 -16.17758 -16.09978 -15.56687 -15.53981 -15.30030 -14.88072 -14.53223 -14.30019 -14.11111 -13.97189 -13.70196 -13.41335 -13.38662 -12.74992 -12.55563 -12.46956 -12.16384 -12.06900 -11.99131 -11.62935 -11.52048 -11.43012 -11.19308 -11.10348 -11.03727 -10.61736 -10.54276 -9.74422 -9.48940 -9.32614 -9.30511 -9.18078 -8.85865 -8.54041 -7.58086 -7.41514 -6.80343 -4.48405 0.30779 1.17169 1.63087 2.47685 2.92104 2.94226 2.98219 3.03346 3.08064 3.09843 3.24002 3.65096 3.87562 4.30606 4.45317 4.59666 4.63014 4.76903 4.81544 4.82348 5.02546 5.08976 5.18698 5.36540 5.56983 5.68056 5.72054 5.82006 5.84192 6.02476 6.15850 6.21937 6.23049 6.32246 6.44353 6.69049 6.85579 6.99336 7.00770 7.07943 7.16152 7.26315 7.51296 7.60743 7.78131 7.96073 7.98606 8.17175 8.20570 8.54563 8.79788 8.85790 10.12768 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.002006 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.981001 B =13954.104859 C =14705.488761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.288 6.288 3 C 0.187 3.813 4 C -0.235 4.235 5 C -0.043 4.043 6 C -0.181 4.181 7 C -0.027 4.027 8 C -0.200 4.200 9 C 0.387 3.613 10 O -0.408 6.408 11 C 0.479 3.521 12 O -0.527 6.527 13 N -0.685 5.685 14 C 0.179 3.821 15 C -0.244 4.244 16 C -0.082 4.082 17 C -0.162 4.162 18 C 0.116 3.884 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.072 3.928 22 N -0.796 5.796 23 Si 0.913 3.087 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.261 1.261 27 C -0.225 4.225 28 C -0.072 4.072 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.177 0.823 36 H 0.411 0.589 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.281 0.719 42 H 0.094 0.906 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.720 14.423 -1.146 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.199 6.199 3 C 0.139 3.861 4 C -0.253 4.253 5 C -0.061 4.061 6 C -0.199 4.199 7 C -0.044 4.044 8 C -0.203 4.203 9 C 0.259 3.741 10 O -0.279 6.279 11 C 0.262 3.738 12 O -0.406 6.406 13 N -0.336 5.336 14 C 0.058 3.942 15 C -0.246 4.246 16 C -0.101 4.101 17 C -0.181 4.181 18 C 0.114 3.886 19 C -0.487 4.487 20 H 0.097 0.903 21 C -0.145 4.145 22 N -0.421 5.421 23 Si 0.737 3.263 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.184 1.184 27 C -0.244 4.244 28 C -0.090 4.090 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.194 0.806 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.392 14.335 -0.838 22.554 hybrid contribution -0.163 -0.954 0.010 0.968 sum -17.555 13.381 -0.827 22.089 Atomic orbital electron populations 1.23177 0.78352 1.04474 1.01304 1.86287 1.21220 1.25835 1.86521 1.19323 0.91101 0.84881 0.90813 1.21175 1.00197 0.92059 1.11911 1.21265 0.94996 0.96960 0.92893 1.21174 0.93578 0.99085 1.06073 1.22558 1.03523 0.89722 0.88597 1.19587 0.90077 0.95035 1.15554 1.22308 0.89143 0.88754 0.73877 1.90631 1.74672 1.30103 1.32503 1.20726 0.88818 0.85194 0.79029 1.90492 1.73483 1.27420 1.49228 1.46605 1.08594 1.09868 1.68570 1.20140 0.76715 0.96085 1.01238 1.18965 1.15080 0.96445 0.94123 1.20592 0.98933 0.94893 0.95728 1.21395 1.02524 0.95664 0.98566 1.17710 0.87521 0.92233 0.91158 1.19655 1.27434 1.00294 1.01359 0.90336 1.25944 0.94426 0.99901 0.94266 1.69788 1.27513 1.36822 1.08019 0.86227 0.79579 0.81899 0.78607 1.19516 1.20023 1.18448 1.21027 1.10371 0.95080 0.97963 1.20418 0.98204 0.95613 0.94800 0.92482 0.92454 0.87811 0.84895 0.85423 0.85138 0.80627 0.75291 0.91564 0.91640 0.89260 0.86035 0.90787 0.88767 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.29 -3.55 8.59 -40.27 -0.35 -3.89 16 3 C 0.19 2.25 6.71 -38.54 -0.26 1.99 16 4 C -0.23 -2.12 9.03 -39.48 -0.36 -2.47 16 5 C -0.04 -0.35 10.03 -39.47 -0.40 -0.74 16 6 C -0.18 -1.67 10.02 -39.63 -0.40 -2.07 16 7 C -0.03 -0.31 9.27 -39.12 -0.36 -0.68 16 8 C -0.20 -2.70 5.89 -104.78 -0.62 -3.31 16 9 C 0.39 5.89 7.17 -31.43 -0.23 5.66 16 10 O -0.41 -6.85 15.32 -16.38 -0.25 -7.10 16 11 C 0.48 7.62 7.82 -11.67 -0.09 7.53 16 12 O -0.53 -8.78 13.46 5.48 0.07 -8.70 16 13 N -0.69 -11.23 5.54 -61.96 -0.34 -11.57 16 14 C 0.18 3.14 5.79 -5.19 -0.03 3.11 16 15 C -0.24 -5.02 5.27 -104.33 -0.55 -5.57 16 16 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 17 C -0.16 -4.06 8.66 -38.87 -0.34 -4.40 16 18 C 0.12 3.00 5.55 -106.82 -0.59 2.41 16 19 C -0.46 -11.81 9.07 -37.74 -0.34 -12.15 16 20 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 21 C 0.07 1.77 5.26 -17.34 -0.09 1.68 16 22 N -0.80 -20.12 10.81 55.55 0.60 -19.52 16 23 Si 0.91 18.30 29.57 -169.99 -5.03 13.28 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 27 C -0.22 -5.30 9.80 -38.88 -0.38 -5.69 16 28 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 29 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 30 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.18 2.24 4.91 -52.49 -0.26 1.98 16 36 H 0.41 6.73 7.94 -40.82 -0.32 6.40 16 37 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 38 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.12 3.17 6.20 -52.49 -0.33 2.84 16 41 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 42 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 43 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -28.97 370.51 -9.47 -38.44 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -4.96 Total: 11.16 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -4.80 Total: -17.67 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.26 Total: -31.09 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.52 Total: -19.70 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.97 -9.47 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530275159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.845 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds