Wall clock time and date at job start Tue Mar 31 2020 23:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35583 * 116.99804 * 2 1 4 4 C 1.38685 * 120.17716 * 0.26180 * 3 2 1 5 5 C 1.38062 * 120.10867 * 180.30176 * 4 3 2 6 6 C 1.38704 * 120.46881 * 359.68940 * 5 4 3 7 7 C 1.37626 * 120.34391 * 0.02968 * 6 5 4 8 8 C 1.40074 * 119.88024 * 359.97438 * 7 6 5 9 9 C 1.47023 * 120.22207 * 179.97438 * 8 7 6 10 10 O 1.21406 * 119.99451 * 184.01839 * 9 8 7 11 11 C 1.49280 * 120.00390 * 4.01932 * 9 8 7 12 12 O 1.21373 * 119.99481 * 5.66407 * 11 9 8 13 13 N 1.34776 * 120.00004 * 185.66396 * 11 9 8 14 14 C 1.46502 * 119.99699 * 179.97438 * 13 11 9 15 15 C 1.50702 * 109.46792 * 180.02562 * 14 13 11 16 16 C 1.38636 * 119.75030 * 269.72622 * 15 14 13 17 17 C 1.37618 * 120.24792 * 179.71864 * 16 15 14 18 18 C 1.40724 * 119.74052 * 0.57837 * 17 16 15 19 19 C 1.41399 * 120.24025 * 179.67664 * 18 17 16 20 20 H 1.07997 * 119.99940 * 151.30794 * 19 18 17 21 21 C 1.39946 * 119.99799 * 331.31133 * 19 18 17 22 22 N 1.30820 * 120.00069 * 349.73108 * 21 19 18 23 23 Si 1.86808 * 119.99469 * 169.73419 * 21 19 18 24 24 H 1.48501 * 109.46863 * 94.51396 * 23 21 19 25 25 H 1.48500 * 109.46994 * 214.51164 * 23 21 19 26 26 H 1.48498 * 109.47117 * 334.50839 * 23 21 19 27 27 C 1.40709 * 119.51195 * 359.69911 * 18 17 16 28 28 C 1.37617 * 119.75046 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.46851 * 299.99358 * 1 2 3 30 30 H 1.08995 * 109.47456 * 59.99576 * 1 2 3 31 31 H 1.09004 * 109.46800 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.94225 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.76451 * 179.72272 * 5 4 3 34 34 H 1.07999 * 119.82442 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.05400 * 180.02562 * 7 6 5 36 36 H 0.97002 * 119.99727 * 0.02562 * 13 11 9 37 37 H 1.08999 * 109.46866 * 60.00783 * 14 13 11 38 38 H 1.09001 * 109.47038 * 300.00288 * 14 13 11 39 39 H 1.07997 * 119.87079 * 359.97438 * 16 15 14 40 40 H 1.07991 * 120.13121 * 180.27892 * 17 16 15 41 41 H 0.97010 * 119.99475 * 179.97438 * 22 21 19 42 42 H 1.08010 * 120.12269 * 179.97438 * 27 18 17 43 43 H 1.07992 * 119.87696 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2928 2.3735 0.0055 5 6 1.9209 3.6029 -0.0008 6 6 3.3055 3.6852 -0.0062 7 6 4.0701 2.5409 -0.0059 8 6 3.4479 1.2859 0.0004 9 6 4.2573 0.0586 0.0002 10 8 3.7156 -1.0257 -0.0681 11 6 5.7452 0.1457 0.0839 12 8 6.2814 1.2209 0.2555 13 7 6.4931 -0.9697 -0.0311 14 6 7.9533 -0.8841 0.0505 15 6 8.5467 -2.2603 -0.1077 16 6 8.7658 -3.0479 1.0119 17 6 9.3018 -4.3084 0.8787 18 6 9.6390 -4.7921 -0.3991 19 6 10.1967 -6.0830 -0.5475 20 1 10.0366 -6.6388 -1.4595 21 6 10.9562 -6.6403 0.4875 22 7 11.3199 -5.9007 1.5034 23 14 11.4505 -8.4405 0.4181 24 1 12.8061 -8.5589 -0.1767 25 1 11.4619 -9.0039 1.7920 26 1 10.4767 -9.1895 -0.4160 27 6 9.4176 -3.9816 -1.5277 28 6 8.8742 -2.7269 -1.3715 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.2142 2.3192 0.0102 33 1 1.3301 4.5069 -0.0010 34 1 3.7861 4.6524 -0.0107 35 1 5.1478 2.6105 -0.0096 36 1 6.0644 -1.8289 -0.1686 37 1 8.2396 -0.4738 1.0189 38 1 8.3241 -0.2354 -0.7430 39 1 8.5110 -2.6724 1.9919 40 1 9.4675 -4.9221 1.7517 41 1 11.8460 -6.2872 2.2209 42 1 9.6732 -4.3428 -2.5130 43 1 8.7038 -2.1030 -2.2363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530275159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:31 Heat of formation + Delta-G solvation = -70.260822 kcal Electronic energy + Delta-G solvation = -27294.531404 eV Core-core repulsion = 23269.591049 eV Total energy + Delta-G solvation = -4024.940355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.96425 -40.78187 -39.64098 -39.18119 -38.32744 -36.44110 -35.14547 -32.53034 -32.14537 -31.20804 -31.12882 -29.04678 -28.29946 -26.83082 -25.30371 -23.58278 -22.93589 -22.86837 -21.87430 -21.21445 -19.24860 -19.12907 -18.80105 -17.88716 -17.24659 -17.07118 -16.96587 -16.63644 -16.53348 -16.04605 -15.69812 -15.61581 -15.54924 -15.18963 -15.00256 -14.77322 -14.41723 -14.25460 -13.85167 -13.60808 -13.48961 -13.36173 -13.15955 -12.97562 -12.91679 -12.75602 -12.41662 -12.22110 -12.16071 -12.07454 -12.04708 -11.51998 -11.31338 -11.10234 -10.42030 -10.22345 -10.09740 -9.41528 -9.31128 -9.25598 -8.62385 -6.40893 -0.66724 0.41483 0.60703 0.78081 1.11195 1.37955 1.43340 1.52260 1.84260 1.98956 2.19953 2.24735 2.71662 2.78478 3.19281 3.65819 3.71174 3.88232 3.96884 4.09523 4.23936 4.27629 4.36818 4.38042 4.38420 4.48527 4.54175 4.63040 4.71236 4.72589 4.94660 5.02485 5.07018 5.14027 5.26728 5.32335 5.33490 5.41516 5.51140 5.67337 5.77184 5.83343 5.93394 6.07783 6.15732 6.33276 6.34413 6.39088 6.66691 6.88125 6.91011 6.98276 8.33113 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.002006 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.981001 B =13954.104859 C =14705.488761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.174 3.826 4 C -0.231 4.231 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.039 4.039 8 C -0.233 4.233 9 C 0.390 3.610 10 O -0.435 6.435 11 C 0.482 3.518 12 O -0.533 6.533 13 N -0.687 5.687 14 C 0.188 3.812 15 C -0.227 4.227 16 C -0.085 4.085 17 C -0.186 4.186 18 C 0.084 3.916 19 C -0.496 4.496 20 H 0.076 0.924 21 C 0.030 3.970 22 N -0.829 5.829 23 Si 0.985 3.015 24 H -0.263 1.263 25 H -0.267 1.267 26 H -0.259 1.259 27 C -0.239 4.239 28 C -0.071 4.071 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.411 0.589 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.287 0.713 42 H 0.100 0.900 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.803 16.739 -1.476 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.126 3.874 4 C -0.249 4.249 5 C -0.046 4.046 6 C -0.198 4.198 7 C -0.057 4.057 8 C -0.235 4.235 9 C 0.265 3.735 10 O -0.309 6.309 11 C 0.266 3.734 12 O -0.412 6.412 13 N -0.339 5.339 14 C 0.067 3.933 15 C -0.228 4.228 16 C -0.104 4.104 17 C -0.205 4.205 18 C 0.082 3.918 19 C -0.525 4.525 20 H 0.095 0.905 21 C -0.184 4.184 22 N -0.456 5.456 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.191 1.191 26 H -0.183 1.183 27 C -0.258 4.258 28 C -0.089 4.089 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.247 0.753 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.487 16.684 -1.171 25.680 hybrid contribution 0.315 -1.418 0.099 1.455 sum -19.172 15.266 -1.072 24.531 Atomic orbital electron populations 1.23477 0.76034 1.05675 1.02980 1.86240 1.23791 1.26597 1.86537 1.19549 0.90836 0.85921 0.91093 1.21563 1.01618 0.91230 1.10493 1.21760 0.94725 0.98105 0.90035 1.21501 0.94335 0.99098 1.04854 1.22455 1.03138 0.90256 0.89850 1.19602 0.90995 0.94523 1.18410 1.22405 0.88588 0.89402 0.73141 1.90613 1.74774 1.31021 1.34458 1.20945 0.89352 0.84713 0.78428 1.90500 1.73829 1.27590 1.49303 1.46438 1.08062 1.10212 1.69138 1.20000 0.77286 0.94081 1.01978 1.19234 1.13027 0.97242 0.93322 1.20809 0.98212 0.94147 0.97260 1.21343 1.04361 0.96872 0.97936 1.18053 0.88547 0.93113 0.92119 1.19891 1.29210 1.01164 1.02282 0.90538 1.26784 0.93886 1.04168 0.93530 1.69851 1.28279 1.38664 1.08775 0.85144 0.79226 0.76195 0.78853 1.18782 1.19137 1.18258 1.21231 1.10877 0.95967 0.97746 1.20730 0.97007 0.95027 0.96153 0.90732 0.90675 0.87085 0.81897 0.81358 0.82659 0.82055 0.75287 0.91173 0.90456 0.87609 0.87903 0.90190 0.88150 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -7.67 8.59 -68.04 -0.58 -8.26 16 3 C 0.17 3.98 6.71 22.94 0.15 4.13 16 4 C -0.23 -3.39 9.03 22.33 0.20 -3.18 16 5 C -0.03 -0.34 10.03 22.34 0.22 -0.11 16 6 C -0.18 -2.79 10.02 22.24 0.22 -2.57 16 7 C -0.04 -0.89 9.27 22.57 0.21 -0.68 16 8 C -0.23 -6.20 5.89 -19.96 -0.12 -6.32 16 9 C 0.39 12.07 7.17 27.55 0.20 12.27 16 10 O -0.43 -15.04 15.32 17.45 0.27 -14.77 16 11 C 0.48 15.30 7.82 87.22 0.68 15.98 16 12 O -0.53 -17.56 13.46 -3.32 -0.04 -17.60 16 13 N -0.69 -22.25 5.54 -468.30 -2.59 -24.85 16 14 C 0.19 6.36 5.79 85.63 0.50 6.86 16 15 C -0.23 -9.18 5.27 -19.67 -0.10 -9.28 16 16 C -0.09 -3.85 9.67 22.22 0.21 -3.64 16 17 C -0.19 -9.67 8.66 22.73 0.20 -9.47 16 18 C 0.08 4.50 5.55 -21.29 -0.12 4.39 16 19 C -0.50 -26.63 9.07 23.46 0.21 -26.42 16 20 H 0.08 3.95 7.87 -2.91 -0.02 3.93 16 21 C 0.03 1.53 5.26 85.26 0.45 1.98 16 22 N -0.83 -43.42 10.81 21.83 0.24 -43.18 16 23 Si 0.99 38.29 29.57 68.60 2.03 40.32 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 27 C -0.24 -11.46 9.80 22.73 0.22 -11.24 16 28 C -0.07 -2.95 9.67 22.22 0.21 -2.74 16 29 H 0.07 0.64 7.65 -2.39 -0.02 0.62 16 30 H 0.07 0.64 7.67 -2.39 -0.02 0.63 16 31 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.16 1.33 6.30 -2.91 -0.02 1.31 16 33 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.16 4.07 4.91 -2.99 -0.01 4.05 16 36 H 0.41 13.48 7.94 -92.71 -0.74 12.75 16 37 H 0.07 2.35 8.08 -2.39 -0.02 2.33 16 38 H 0.08 2.47 8.08 -2.39 -0.02 2.46 16 39 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 40 H 0.10 5.67 6.20 -2.92 -0.02 5.65 16 41 H 0.29 13.63 8.30 -92.70 -0.77 12.86 16 42 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -65.92 370.51 4.31 -61.62 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.33 Total: 35.52 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 4.67 Total: -28.79 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -2.36 Total: -68.03 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.36 Total: -40.63 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -65.92 4.31 -61.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530275159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.645 kcal (2) G-P(sol) polarization free energy of solvation -65.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds