Wall clock time and date at job start Tue Mar 31 2020 22:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47027 * 2 1 4 4 C 1.50706 * 109.46592 * 119.99653 * 2 1 3 5 5 H 1.07998 * 119.99692 * 120.00012 * 4 2 1 6 6 C 1.37877 * 120.00116 * 299.99316 * 4 2 1 7 7 N 1.31513 * 119.99868 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00092 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46703 * 90.00391 * 8 6 4 10 10 H 1.48503 * 109.47061 * 210.00339 * 8 6 4 11 11 H 1.48502 * 109.46940 * 330.00438 * 8 6 4 12 12 N 1.46900 * 109.47111 * 239.99114 * 2 1 3 13 13 C 1.46901 * 110.99518 * 85.00365 * 12 2 1 14 14 C 1.50703 * 109.46962 * 179.97438 * 13 12 2 15 15 C 1.38244 * 119.91010 * 260.27634 * 14 13 12 16 16 C 1.38036 * 120.17502 * 180.27504 * 15 14 13 17 17 C 1.39337 * 119.99301 * 359.72184 * 16 15 14 18 18 C 1.48475 * 120.08902 * 180.02562 * 17 16 15 19 19 N 1.34043 * 126.67279 * 179.66329 * 18 17 16 20 20 N 1.28990 * 107.26950 * 179.83686 * 19 18 17 21 21 N 1.28731 * 108.93633 * 0.43998 * 20 19 18 22 22 H 0.97006 * 125.33538 * 179.72385 * 21 20 19 23 23 N 1.28864 * 109.32187 * 359.72193 * 21 20 19 24 24 C 1.39195 * 119.82337 * 0.02562 * 17 16 15 25 25 C 1.38561 * 119.82142 * 359.97438 * 24 17 16 26 26 O 1.35901 * 119.99562 * 180.02562 * 25 24 17 27 27 C 1.42903 * 117.00336 * 0.02562 * 26 25 24 28 28 F 1.39904 * 109.46926 * 59.99533 * 27 26 25 29 29 F 1.39901 * 109.46899 * 300.00077 * 27 26 25 30 30 H 1.09001 * 109.46961 * 300.00750 * 1 2 3 31 31 H 1.09004 * 109.46648 * 60.00431 * 1 2 3 32 32 H 1.08998 * 109.47027 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00098 * 179.97438 * 7 6 4 34 34 H 1.00900 * 110.99929 * 208.95454 * 12 2 1 35 35 H 1.09002 * 109.47026 * 60.00118 * 13 12 2 36 36 H 1.09000 * 109.47229 * 299.99700 * 13 12 2 37 37 H 1.08000 * 119.91439 * 359.97438 * 15 14 13 38 38 H 1.08002 * 120.00263 * 179.75007 * 16 15 14 39 39 H 1.07998 * 120.08915 * 179.97438 * 24 17 16 40 40 H 1.09002 * 109.47382 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9429 0.8299 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.6304 -0.5437 4.4120 10 1 1.3442 -0.9486 5.1124 11 1 2.4878 -2.5651 3.7125 12 7 2.0197 -0.6927 -1.1993 13 6 2.0826 0.2223 -2.3468 14 6 2.5886 -0.5219 -3.5556 15 6 3.9144 -0.4076 -3.9304 16 6 4.3824 -1.0824 -5.0399 17 6 3.5191 -1.8858 -5.7820 18 6 4.0204 -2.6130 -6.9755 19 7 3.3120 -3.4214 -7.7764 20 7 4.1120 -3.8486 -8.6936 21 7 5.2820 -3.3507 -8.4926 22 1 6.0649 -3.5187 -9.0401 23 7 5.2499 -2.5939 -7.4501 24 6 2.1855 -2.0049 -5.4015 25 6 1.7237 -1.3242 -4.2864 26 8 0.4224 -1.4383 -3.9114 27 6 -0.4124 -2.2772 -4.7123 28 9 0.0956 -3.5807 -4.7087 29 9 -0.4405 -1.7913 -6.0240 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7083 1.1612 3.4843 34 1 2.9174 -1.1207 -1.0285 35 1 2.7590 1.0459 -2.1182 36 1 1.0872 0.6161 -2.5525 37 1 4.5846 0.2150 -3.3563 38 1 5.4177 -0.9880 -5.3325 39 1 1.5125 -2.6261 -5.9738 40 1 -1.4231 -2.2803 -4.3039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:57 Heat of formation + Delta-G solvation = -14.785560 kcal Electronic energy + Delta-G solvation = -29104.349476 eV Core-core repulsion = 24592.170682 eV Total energy + Delta-G solvation = -4512.178795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.25481 -48.24596 -45.51889 -41.20816 -38.62372 -37.68339 -35.57066 -35.02735 -34.16231 -32.35178 -31.43395 -29.86773 -27.40569 -27.11498 -26.56511 -25.68119 -24.16646 -23.40364 -22.32213 -21.64093 -20.41169 -19.76013 -18.94648 -18.81504 -18.46182 -18.19208 -17.24594 -16.98594 -16.89306 -16.29529 -15.80160 -15.51639 -15.39776 -15.19057 -15.06339 -14.82739 -14.62272 -14.54788 -14.40165 -13.89743 -13.65469 -13.43867 -13.39135 -13.33989 -13.19106 -12.88417 -12.70346 -12.45012 -12.41879 -12.36816 -12.15807 -12.13584 -11.98579 -11.80477 -11.65637 -10.84353 -10.53018 -9.87656 -9.37402 -8.95913 -8.09037 -6.22400 -0.43433 0.11786 0.27943 1.20808 1.37550 1.44412 1.46187 1.56411 1.71427 2.44629 2.50820 2.63086 2.64405 3.09499 3.19851 3.55335 3.66069 3.71101 3.76756 3.93807 4.08726 4.15497 4.21418 4.39578 4.43544 4.59268 4.71894 4.85777 4.94797 5.09429 5.17462 5.27843 5.28895 5.35695 5.53672 5.57076 5.59523 5.71774 5.92703 6.00447 6.28673 6.52576 6.82546 7.05529 7.06104 7.47819 8.96396 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.002858 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.019117 B = 9794.684519 C =10764.102119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.219 3.781 3 H -0.026 1.026 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.677 5.677 13 C 0.107 3.893 14 C -0.081 4.081 15 C -0.077 4.077 16 C -0.095 4.095 17 C 0.002 3.998 18 C 0.210 3.790 19 N -0.297 5.297 20 N -0.055 5.055 21 N -0.197 5.197 22 H 0.496 0.504 23 N -0.284 5.284 24 C -0.163 4.163 25 C 0.117 3.883 26 O -0.314 6.314 27 C 0.402 3.598 28 F -0.209 7.209 29 F -0.208 7.208 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.332 0.668 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.139 0.861 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.422 -5.342 -21.955 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 H -0.009 1.009 4 C -0.573 4.573 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.308 5.308 13 C -0.021 4.021 14 C -0.083 4.083 15 C -0.096 4.096 16 C -0.115 4.115 17 C -0.001 4.001 18 C -0.069 4.069 19 N -0.169 5.169 20 N -0.050 5.050 21 N -0.048 5.048 22 H 0.356 0.644 23 N -0.137 5.137 24 C -0.184 4.184 25 C 0.073 3.927 26 O -0.231 6.231 27 C 0.313 3.687 28 F -0.191 7.191 29 F -0.189 7.189 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.149 0.851 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.157 0.843 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.569 -5.828 -22.412 23.818 hybrid contribution 1.253 0.163 0.863 1.530 sum 6.822 -5.665 -21.549 23.302 Atomic orbital electron populations 1.21513 0.97744 0.98748 0.98913 1.18900 0.92733 0.90831 0.86501 1.00890 1.21586 1.31516 1.12589 0.91621 0.92394 1.25680 0.95219 0.95678 1.01875 1.70020 1.37466 1.24097 1.24083 0.85540 0.78005 0.79041 0.78913 1.20079 1.21015 1.19453 1.60651 1.32227 1.33033 1.04847 1.20706 1.00196 0.92994 0.88250 1.19572 0.93416 0.98514 0.96795 1.21139 0.93298 0.98875 0.96261 1.21260 1.00525 0.95489 0.94272 1.17024 0.93026 0.98416 0.91678 1.23609 0.86526 0.98489 0.98306 1.76117 1.25681 1.12429 1.02652 1.78863 0.90395 1.17340 1.18388 1.47800 1.12126 1.26909 1.17968 0.64444 1.74878 1.21289 1.15265 1.02277 1.21438 0.96864 1.02506 0.97565 1.18543 0.83552 0.96770 0.93830 1.86796 1.18915 1.64684 1.52685 1.24192 0.96234 0.72292 0.75996 1.93074 1.89763 1.40192 1.96086 1.93070 1.97074 1.87761 1.41036 0.92628 0.95857 0.95505 0.92897 0.85064 0.94356 0.91337 0.82136 0.82293 0.84294 0.75857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.48 9.19 71.98 0.66 -4.82 16 2 C 0.22 10.95 2.60 44.17 0.11 11.07 16 3 H -0.03 -1.45 7.80 -2.39 -0.02 -1.47 16 4 C -0.53 -29.03 8.59 25.60 0.22 -28.81 16 5 H 0.06 3.10 7.62 -2.91 -0.02 3.07 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.31 11.32 21.45 0.24 -52.07 16 8 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 N -0.68 -28.24 6.29 -499.43 -3.14 -31.39 16 13 C 0.11 3.74 5.26 85.56 0.45 4.19 16 14 C -0.08 -2.41 5.41 -19.73 -0.11 -2.52 16 15 C -0.08 -1.84 9.65 22.22 0.21 -1.62 16 16 C -0.10 -2.10 9.69 22.49 0.22 -1.88 16 17 C 0.00 0.06 5.87 -20.05 -0.12 -0.06 16 18 C 0.21 5.17 7.94 137.39 1.09 6.26 16 19 N -0.30 -7.78 12.23 -52.18 -0.64 -8.42 16 20 N -0.05 -1.11 13.47 37.02 0.50 -0.62 16 21 N -0.20 -2.65 7.90 37.02 0.29 -2.35 16 22 H 0.50 1.25 8.96 -347.53 -3.12 -1.87 16 23 N -0.28 -5.40 12.08 -52.12 -0.63 -6.03 16 24 C -0.16 -4.67 7.91 22.58 0.18 -4.49 16 25 C 0.12 3.56 6.45 22.48 0.15 3.71 16 26 O -0.31 -9.40 9.65 -92.43 -0.89 -10.30 16 27 C 0.40 9.12 5.98 113.37 0.68 9.80 16 28 F -0.21 -5.54 15.58 44.97 0.70 -4.84 16 29 F -0.21 -5.02 15.58 44.97 0.70 -4.32 16 30 H 0.05 3.01 6.07 -2.39 -0.01 3.00 16 31 H 0.02 1.02 7.45 -2.38 -0.02 1.00 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.33 13.59 8.22 -89.69 -0.74 12.85 16 35 H 0.04 1.29 7.91 -2.39 -0.02 1.27 16 36 H 0.07 2.51 7.14 -2.39 -0.02 2.49 16 37 H 0.16 3.07 8.03 -2.91 -0.02 3.05 16 38 H 0.16 2.69 7.88 -2.91 -0.02 2.67 16 39 H 0.14 4.09 4.92 -2.91 -0.01 4.07 16 40 H 0.23 2.86 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -70.43 351.40 0.64 -69.78 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -2.71 Total: 13.31 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 4.20 Total: -7.93 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.38 Total: -100.88 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.89 Total: -10.30 kcal Atomic # 9 Polarization: -10.56 SS G_CDS: 1.40 Total: -9.16 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -70.43 0.64 -69.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.998 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds