Wall clock time and date at job start Tue Mar 31 2020 23:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00350 * 2 1 4 4 C 1.50704 * 109.47279 * 66.04174 * 3 2 1 5 5 H 1.08003 * 119.99778 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00479 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99568 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00361 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46924 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47367 * 120.00068 * 8 6 4 11 11 H 1.48501 * 109.46969 * 240.00150 * 8 6 4 12 12 C 1.46897 * 111.00324 * 236.04347 * 2 1 3 13 13 C 1.52997 * 109.46914 * 293.95616 * 12 2 1 14 14 H 1.09001 * 109.47554 * 59.99917 * 13 12 2 15 15 O 1.42901 * 109.47525 * 299.99510 * 13 12 2 16 16 C 1.52999 * 109.46828 * 179.97438 * 13 12 2 17 17 S 1.81404 * 109.47155 * 184.99961 * 16 13 12 18 18 C 1.81401 * 103.00152 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.46911 * 179.97438 * 18 17 16 20 20 C 1.37971 * 120.07180 * 96.73098 * 19 18 17 21 21 C 1.38344 * 120.14762 * 180.29637 * 20 19 18 22 22 C 1.38390 * 120.30191 * 359.44186 * 21 20 19 23 23 C 1.37917 * 120.15177 * 0.55383 * 22 21 20 24 24 C 1.39604 * 120.07878 * 276.74572 * 19 18 17 25 25 C 1.47724 * 120.15031 * 359.96054 * 24 19 18 26 26 O 1.21475 * 119.99858 * 6.01480 * 25 24 19 27 27 O 1.34711 * 120.00141 * 186.01737 * 25 24 19 28 28 H 1.09001 * 109.46813 * 183.95312 * 1 2 3 29 29 H 1.08998 * 109.47114 * 303.95937 * 1 2 3 30 30 H 1.08996 * 109.46519 * 63.95384 * 1 2 3 31 31 H 1.08997 * 109.47471 * 186.04210 * 3 2 1 32 32 H 1.09002 * 109.47049 * 306.04495 * 3 2 1 33 33 H 0.97004 * 120.00053 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47394 * 173.95471 * 12 2 1 35 35 H 1.09002 * 109.47085 * 53.95784 * 12 2 1 36 36 H 0.96706 * 113.99695 * 300.00644 * 15 13 12 37 37 H 1.09004 * 109.47445 * 65.00107 * 16 13 12 38 38 H 1.08995 * 109.47673 * 304.99681 * 16 13 12 39 39 H 1.09001 * 109.47080 * 60.00137 * 18 17 16 40 40 H 1.08992 * 109.47160 * 300.00244 * 18 17 16 41 41 H 1.08001 * 119.92769 * 0.02562 * 20 19 18 42 42 H 1.08000 * 119.85223 * 179.71742 * 21 20 19 43 43 H 1.08001 * 119.92494 * 180.30256 * 22 21 20 44 44 H 1.07998 * 120.08038 * 179.74622 * 23 22 21 45 45 H 0.96698 * 117.00081 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0268 3.3495 1.5285 7 7 2.7112 4.0022 0.6146 8 14 1.5830 4.1869 3.1382 9 1 0.8156 3.2443 3.9914 10 1 2.8248 4.5945 3.8431 11 1 0.7551 5.3878 2.8596 12 6 1.9955 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7392 0.2428 16 6 2.1793 -3.0403 -2.1553 17 16 1.6230 -4.7626 -2.0338 18 6 2.3602 -5.5341 -3.5008 19 6 1.9843 -6.9928 -3.5437 20 6 0.9152 -7.4090 -4.3101 21 6 0.5650 -8.7470 -4.3458 22 6 1.2903 -9.6781 -3.6233 23 6 2.3614 -9.2758 -2.8531 24 6 2.7168 -7.9260 -2.8079 25 6 3.8631 -7.4878 -1.9855 26 8 4.1037 -6.3036 -1.8608 27 8 4.6416 -8.4013 -1.3738 28 1 -0.3633 -1.0253 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3632 0.4512 -0.9233 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 2.9852 4.9186 0.7762 34 1 3.0797 -0.6611 -1.1755 35 1 1.5612 -0.3873 -2.0628 36 1 3.1653 -2.6771 0.2788 37 1 3.2688 -3.0086 -2.1421 38 1 1.8144 -2.6055 -3.0858 39 1 3.4451 -5.4400 -3.4544 40 1 1.9904 -5.0367 -4.3974 41 1 0.3477 -6.6882 -4.8800 42 1 -0.2756 -9.0669 -4.9437 43 1 1.0146 -10.7217 -3.6594 44 1 2.9241 -10.0029 -2.2865 45 1 5.3800 -8.0665 -0.8469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598468943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:24 Heat of formation + Delta-G solvation = -104.299029 kcal Electronic energy + Delta-G solvation = -26143.211624 eV Core-core repulsion = 22252.239213 eV Total energy + Delta-G solvation = -3890.972411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85722 -39.04164 -37.95123 -36.41754 -35.42552 -33.15950 -32.50953 -31.82246 -30.95570 -27.87305 -27.34606 -26.53490 -24.73998 -24.08554 -22.63291 -21.54899 -21.08916 -20.19074 -18.40160 -17.64906 -16.78445 -16.36600 -16.21853 -15.92858 -15.81532 -15.70436 -15.23774 -14.89713 -14.84100 -14.41374 -14.23144 -13.89930 -13.77157 -13.63413 -13.25844 -13.09393 -12.73086 -12.46832 -12.25689 -12.05720 -11.89284 -11.75961 -11.61399 -11.32113 -11.18150 -10.86295 -10.77836 -10.64190 -10.47865 -10.38106 -10.01228 -9.96679 -9.60586 -9.49978 -9.19643 -9.05622 -8.42178 -7.45789 -7.18088 -6.00976 -4.01669 0.23211 0.72214 1.81594 2.26345 2.59716 2.71253 3.33072 3.39411 3.40253 3.46369 4.17312 4.27946 4.42533 4.50846 4.61078 4.64149 4.77032 4.78764 5.04502 5.07236 5.11639 5.23083 5.27728 5.35759 5.42007 5.49205 5.51614 5.62300 5.67123 5.77450 5.94029 5.98312 6.06371 6.22458 6.24681 6.31502 6.35405 6.40283 6.80131 7.28584 7.34288 7.63766 7.82583 8.03319 8.13446 8.22484 8.57151 9.06786 9.62492 11.10059 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.001959 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.792954 B =14288.030919 C =14784.840299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.030 3.970 13 C 0.131 3.869 14 H 0.101 0.899 15 O -0.536 6.536 16 C -0.123 4.123 17 S -0.205 6.205 18 C -0.073 4.073 19 C -0.004 4.004 20 C -0.117 4.117 21 C -0.082 4.082 22 C -0.133 4.133 23 C -0.062 4.062 24 C -0.114 4.114 25 C 0.516 3.484 26 O -0.483 6.483 27 O -0.517 6.517 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.009 0.991 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.260 0.740 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.371 0.629 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.139 0.861 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 -29.369 -13.113 32.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.101 4.101 13 C 0.070 3.930 14 H 0.119 0.881 15 O -0.339 6.339 16 C -0.272 4.272 17 S 0.026 5.974 18 C -0.219 4.219 19 C -0.006 4.006 20 C -0.137 4.137 21 C -0.100 4.100 22 C -0.152 4.152 23 C -0.080 4.080 24 C -0.117 4.117 25 C 0.359 3.641 26 O -0.371 6.371 27 O -0.329 6.329 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.027 0.973 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.217 0.783 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -1.380 -29.757 -11.973 32.105 hybrid contribution 1.449 1.941 -0.846 2.566 sum 0.069 -27.816 -12.820 30.628 Atomic orbital electron populations 1.22261 0.88905 0.99681 1.00424 1.62005 1.06929 1.17386 1.38983 1.19755 0.95281 0.81548 0.96683 1.21214 1.34540 0.96803 1.01652 0.91692 1.25006 0.95364 0.97380 0.97063 1.69974 1.38661 1.11360 1.34058 0.86425 0.78140 0.79250 0.83529 1.19592 1.21025 1.21166 1.22710 1.00620 0.93200 0.93594 1.21599 0.98520 0.90718 0.82170 0.88141 1.86615 1.25185 1.84792 1.37345 1.24295 1.04424 0.94816 1.03699 1.87047 1.67579 1.08089 1.34713 1.22639 1.05954 0.93638 0.99714 1.19334 0.93893 0.93175 0.94149 1.21055 0.96378 0.96512 0.99723 1.21442 0.98574 0.92855 0.97148 1.21205 0.95986 1.00281 0.97747 1.21459 0.95890 0.94329 0.96312 1.18887 0.96782 0.94466 1.01517 1.20799 0.81989 0.83577 0.77752 1.90926 1.69970 1.17665 1.58516 1.84511 1.43311 1.42487 1.62624 0.93417 0.90608 0.97300 0.95358 0.99273 0.93039 0.91047 0.95250 0.78251 0.89716 0.89679 0.86909 0.89805 0.84697 0.85028 0.84982 0.84281 0.72580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.06 0.55 1.28 16 2 N -0.53 -11.80 4.62 -244.38 -1.13 -12.93 16 3 C 0.19 5.13 4.72 -4.97 -0.02 5.10 16 4 C -0.50 -14.49 8.46 -34.44 -0.29 -14.79 16 5 H 0.06 1.87 7.12 -52.48 -0.37 1.50 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 C 0.03 0.53 4.62 -3.83 -0.02 0.52 16 13 C 0.13 2.05 2.83 -26.73 -0.08 1.98 16 14 H 0.10 1.65 6.55 -51.93 -0.34 1.31 16 15 O -0.54 -9.24 12.96 -35.23 -0.46 -9.70 16 16 C -0.12 -1.60 5.61 37.16 0.21 -1.39 16 17 S -0.20 -2.74 20.31 -107.50 -2.18 -4.92 16 18 C -0.07 -0.77 5.24 36.01 0.19 -0.58 16 19 C 0.00 -0.04 5.17 -104.21 -0.54 -0.58 16 20 C -0.12 -0.88 9.66 -39.64 -0.38 -1.27 16 21 C -0.08 -0.49 10.04 -39.49 -0.40 -0.89 16 22 C -0.13 -0.79 10.03 -39.64 -0.40 -1.18 16 23 C -0.06 -0.45 9.62 -39.17 -0.38 -0.83 16 24 C -0.11 -1.09 5.87 -104.98 -0.62 -1.70 16 25 C 0.52 5.28 8.20 34.61 0.28 5.57 16 26 O -0.48 -6.15 13.09 -19.25 -0.25 -6.40 16 27 O -0.52 -3.78 12.70 -40.52 -0.51 -4.29 16 28 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 29 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 32 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 35 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.37 5.46 9.05 45.56 0.41 5.87 16 37 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 1.30 5.86 -51.92 -0.30 1.00 16 40 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 41 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.14 0.81 7.63 -52.49 -0.40 0.41 16 45 H 0.42 1.42 9.11 45.56 0.42 1.83 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -35.14 388.10 -9.99 -45.13 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.03 Total: 3.93 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.99 Total: -7.33 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: -0.39 Total: -39.34 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.22 Total: -20.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.18 Total: -4.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.14 -9.99 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.168 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds