Wall clock time and date at job start Tue Mar 31 2020 23:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 111.00350 * 2 1 4 4 C 1.50704 * 109.47279 * 66.04174 * 3 2 1 5 5 H 1.08003 * 119.99778 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00479 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99568 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00361 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46924 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47367 * 120.00068 * 8 6 4 11 11 H 1.48501 * 109.46969 * 240.00150 * 8 6 4 12 12 C 1.46897 * 111.00324 * 236.04347 * 2 1 3 13 13 C 1.52997 * 109.46914 * 293.95616 * 12 2 1 14 14 H 1.09001 * 109.47554 * 59.99917 * 13 12 2 15 15 O 1.42901 * 109.47525 * 299.99510 * 13 12 2 16 16 C 1.52999 * 109.46828 * 179.97438 * 13 12 2 17 17 S 1.81404 * 109.47155 * 184.99961 * 16 13 12 18 18 C 1.81401 * 103.00152 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.46911 * 179.97438 * 18 17 16 20 20 C 1.37971 * 120.07180 * 96.73098 * 19 18 17 21 21 C 1.38344 * 120.14762 * 180.29637 * 20 19 18 22 22 C 1.38390 * 120.30191 * 359.44186 * 21 20 19 23 23 C 1.37917 * 120.15177 * 0.55383 * 22 21 20 24 24 C 1.39604 * 120.07878 * 276.74572 * 19 18 17 25 25 C 1.47724 * 120.15031 * 359.96054 * 24 19 18 26 26 O 1.21475 * 119.99858 * 6.01480 * 25 24 19 27 27 O 1.34711 * 120.00141 * 186.01737 * 25 24 19 28 28 H 1.09001 * 109.46813 * 183.95312 * 1 2 3 29 29 H 1.08998 * 109.47114 * 303.95937 * 1 2 3 30 30 H 1.08996 * 109.46519 * 63.95384 * 1 2 3 31 31 H 1.08997 * 109.47471 * 186.04210 * 3 2 1 32 32 H 1.09002 * 109.47049 * 306.04495 * 3 2 1 33 33 H 0.97004 * 120.00053 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47394 * 173.95471 * 12 2 1 35 35 H 1.09002 * 109.47085 * 53.95784 * 12 2 1 36 36 H 0.96706 * 113.99695 * 300.00644 * 15 13 12 37 37 H 1.09004 * 109.47445 * 65.00107 * 16 13 12 38 38 H 1.08995 * 109.47673 * 304.99681 * 16 13 12 39 39 H 1.09001 * 109.47080 * 60.00137 * 18 17 16 40 40 H 1.08992 * 109.47160 * 300.00244 * 18 17 16 41 41 H 1.08001 * 119.92769 * 0.02562 * 20 19 18 42 42 H 1.08000 * 119.85223 * 179.71742 * 21 20 19 43 43 H 1.08001 * 119.92494 * 180.30256 * 22 21 20 44 44 H 1.07998 * 120.08038 * 179.74622 * 23 22 21 45 45 H 0.96698 * 117.00081 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0268 3.3495 1.5285 7 7 2.7112 4.0022 0.6146 8 14 1.5830 4.1869 3.1382 9 1 0.8156 3.2443 3.9914 10 1 2.8248 4.5945 3.8431 11 1 0.7551 5.3878 2.8596 12 6 1.9955 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7392 0.2428 16 6 2.1793 -3.0403 -2.1553 17 16 1.6230 -4.7626 -2.0338 18 6 2.3602 -5.5341 -3.5008 19 6 1.9843 -6.9928 -3.5437 20 6 0.9152 -7.4090 -4.3101 21 6 0.5650 -8.7470 -4.3458 22 6 1.2903 -9.6781 -3.6233 23 6 2.3614 -9.2758 -2.8531 24 6 2.7168 -7.9260 -2.8079 25 6 3.8631 -7.4878 -1.9855 26 8 4.1037 -6.3036 -1.8608 27 8 4.6416 -8.4013 -1.3738 28 1 -0.3633 -1.0253 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3632 0.4512 -0.9233 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 2.9852 4.9186 0.7762 34 1 3.0797 -0.6611 -1.1755 35 1 1.5612 -0.3873 -2.0628 36 1 3.1653 -2.6771 0.2788 37 1 3.2688 -3.0086 -2.1421 38 1 1.8144 -2.6055 -3.0858 39 1 3.4451 -5.4400 -3.4544 40 1 1.9904 -5.0367 -4.3974 41 1 0.3477 -6.6882 -4.8800 42 1 -0.2756 -9.0669 -4.9437 43 1 1.0146 -10.7217 -3.6594 44 1 2.9241 -10.0029 -2.2865 45 1 5.3800 -8.0665 -0.8469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598468943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:23 Heat of formation + Delta-G solvation = -129.662445 kcal Electronic energy + Delta-G solvation = -26144.311465 eV Core-core repulsion = 22252.239213 eV Total energy + Delta-G solvation = -3892.072251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52049 -39.63429 -39.43556 -37.11265 -37.08454 -34.63779 -33.77262 -32.37271 -32.29481 -29.44021 -28.50458 -28.03061 -25.94328 -25.31149 -23.33363 -22.95736 -21.91138 -21.75105 -19.05298 -18.62687 -18.32098 -17.68688 -17.23346 -16.91032 -16.80270 -16.69321 -16.36623 -16.23378 -15.94037 -15.65406 -15.46389 -15.40219 -14.73887 -14.46864 -14.39887 -13.94613 -13.92288 -13.82247 -13.43663 -13.27651 -13.12018 -12.80338 -12.71011 -12.66062 -12.55936 -12.48000 -12.42222 -12.15093 -12.07966 -11.79597 -11.45327 -11.22389 -10.99294 -10.80851 -10.63960 -10.04551 -9.77467 -8.99576 -8.47152 -8.22384 -6.32052 -0.39486 0.13475 0.94419 1.39646 1.40454 1.54610 1.59873 1.68024 2.11286 2.39292 2.82234 3.09427 3.15383 3.53140 3.57916 3.69520 3.80408 3.97719 4.06231 4.11676 4.12230 4.24623 4.28793 4.47178 4.49675 4.51566 4.54808 4.56917 4.68368 4.70081 4.84525 4.99261 4.99365 5.05274 5.14929 5.27828 5.28244 5.42253 5.45941 5.63439 5.65239 5.86742 6.02679 6.29305 6.58890 6.83481 6.87018 7.01385 7.37521 8.88812 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.001959 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.792954 B =14288.030919 C =14784.840299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.031 3.969 13 C 0.144 3.856 14 H 0.096 0.904 15 O -0.554 6.554 16 C -0.110 4.110 17 S -0.244 6.244 18 C -0.056 4.056 19 C -0.027 4.027 20 C -0.122 4.122 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.066 4.066 24 C -0.138 4.138 25 C 0.514 3.486 26 O -0.518 6.518 27 O -0.510 6.510 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.014 0.986 31 H 0.005 0.995 32 H -0.036 1.036 33 H 0.265 0.735 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.380 0.620 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.151 0.849 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 -31.419 -13.583 34.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.202 1.202 12 C -0.099 4.099 13 C 0.083 3.917 14 H 0.114 0.886 15 O -0.359 6.359 16 C -0.259 4.259 17 S -0.014 6.014 18 C -0.203 4.203 19 C -0.029 4.029 20 C -0.142 4.142 21 C -0.096 4.096 22 C -0.146 4.146 23 C -0.084 4.084 24 C -0.140 4.140 25 C 0.358 3.642 26 O -0.408 6.408 27 O -0.324 6.324 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.023 0.977 32 H -0.019 1.019 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.228 0.772 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.166 0.834 42 H 0.180 0.820 43 H 0.180 0.820 44 H 0.169 0.831 45 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -2.478 -31.839 -12.441 34.273 hybrid contribution 1.812 2.405 -0.771 3.108 sum -0.666 -29.434 -13.212 32.270 Atomic orbital electron populations 1.22226 0.87770 1.00955 0.99867 1.61904 1.08073 1.15023 1.41487 1.19403 0.93677 0.83693 0.95052 1.21489 1.34766 0.97466 1.02346 0.92150 1.25926 0.95042 0.98043 1.00794 1.70088 1.39431 1.11867 1.36095 0.85312 0.78104 0.78146 0.78920 1.18954 1.20297 1.20229 1.22779 1.00489 0.94228 0.92436 1.21420 0.98216 0.89238 0.82824 0.88641 1.86576 1.26144 1.84874 1.38355 1.24082 1.04363 0.94486 1.02992 1.87099 1.68109 1.08549 1.37618 1.22565 1.04853 0.94547 0.98329 1.19414 0.95311 0.92463 0.95723 1.21310 0.95735 0.97806 0.99373 1.21842 0.98981 0.92061 0.96676 1.21612 0.94830 1.01853 0.96333 1.21689 0.96517 0.93571 0.96640 1.19068 0.97097 0.95641 1.02231 1.21096 0.82215 0.83360 0.77491 1.90906 1.71023 1.18969 1.59929 1.84478 1.43661 1.41821 1.62460 0.90915 0.92490 0.96705 0.97730 1.01884 0.92654 0.91133 0.94306 0.77239 0.89536 0.87997 0.88244 0.88218 0.83423 0.82020 0.81974 0.83119 0.70823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.14 127.69 1.17 2.81 16 2 N -0.54 -24.44 4.62 -927.07 -4.28 -28.72 16 3 C 0.21 11.42 4.72 85.56 0.40 11.82 16 4 C -0.52 -30.61 8.46 25.60 0.22 -30.40 16 5 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 7 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 8 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.03 1.12 4.62 86.30 0.40 1.51 16 13 C 0.14 4.45 2.83 30.59 0.09 4.53 16 14 H 0.10 3.06 6.55 -2.39 -0.02 3.04 16 15 O -0.55 -19.12 12.96 -148.98 -1.93 -21.05 16 16 C -0.11 -2.80 5.61 71.98 0.40 -2.40 16 17 S -0.24 -6.48 20.31 -56.49 -1.15 -7.63 16 18 C -0.06 -1.17 5.24 71.24 0.37 -0.80 16 19 C -0.03 -0.51 5.17 -19.60 -0.10 -0.61 16 20 C -0.12 -1.61 9.66 22.23 0.21 -1.40 16 21 C -0.08 -0.68 10.04 22.33 0.22 -0.46 16 22 C -0.13 -1.11 10.03 22.23 0.22 -0.88 16 23 C -0.07 -0.85 9.62 22.54 0.22 -0.63 16 24 C -0.14 -2.54 5.87 -20.10 -0.12 -2.66 16 25 C 0.51 10.59 8.20 70.33 0.58 11.17 16 26 O -0.52 -13.58 13.09 19.92 0.26 -13.32 16 27 O -0.51 -7.23 12.70 -56.21 -0.71 -7.94 16 28 H 0.07 2.59 6.47 -2.39 -0.02 2.58 16 29 H 0.06 2.52 6.76 -2.39 -0.02 2.50 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 32 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 33 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 34 H 0.07 2.52 7.93 -2.39 -0.02 2.51 16 35 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 36 H 0.38 11.31 9.05 -74.05 -0.67 10.64 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.10 2.35 5.86 -2.39 -0.01 2.33 16 40 H 0.10 1.67 8.04 -2.39 -0.02 1.65 16 41 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 42 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 43 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 44 H 0.15 1.47 7.63 -2.91 -0.02 1.45 16 45 H 0.43 2.80 9.11 -74.06 -0.67 2.12 16 Total: -1.00 -76.74 388.10 -1.08 -77.82 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.32 Total: 18.11 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.75 Total: -7.94 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -4.00 Total: -85.53 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -2.38 Total: -42.31 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -1.15 Total: -7.63 kcal Total: -76.74 -1.08 -77.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.845 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds