Wall clock time and date at job start Tue Mar 31 2020 23:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99840 * 2 1 4 4 C 1.38755 * 120.05550 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94584 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05452 * 359.74499 * 5 4 3 7 7 C 1.38245 * 120.11118 * 0.50988 * 6 5 4 8 8 C 1.50703 * 119.97223 * 179.76764 * 7 6 5 9 9 H 1.09002 * 109.47152 * 159.72375 * 8 7 6 10 10 C 1.50701 * 109.47064 * 279.72283 * 8 7 6 11 11 O 1.20828 * 119.99823 * 119.99723 * 10 8 7 12 12 O 1.34224 * 120.00059 * 300.00044 * 10 8 7 13 13 N 1.46896 * 109.46997 * 39.72313 * 8 7 6 14 14 C 1.46903 * 111.00095 * 56.04979 * 13 8 7 15 15 C 1.46903 * 110.99970 * 180.02562 * 13 8 7 16 16 C 1.53002 * 109.47471 * 170.00080 * 15 13 8 17 17 C 1.52991 * 109.47252 * 179.97438 * 16 15 13 18 18 S 1.80997 * 109.47298 * 180.02562 * 17 16 15 19 19 C 1.76200 * 100.00348 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99943 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99816 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00559 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99632 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47132 * 59.99870 * 23 21 19 25 25 H 1.48504 * 109.46950 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46987 * 300.00121 * 23 21 19 27 27 C 1.38164 * 120.05485 * 359.48937 * 7 6 5 28 28 H 1.08999 * 109.47552 * 299.99874 * 1 2 3 29 29 H 1.08997 * 109.47166 * 60.00474 * 1 2 3 30 30 H 1.09008 * 109.46801 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.02706 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.97593 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.94452 * 180.28215 * 6 5 4 34 34 H 0.96701 * 117.00226 * 179.97438 * 12 10 8 35 35 H 1.08996 * 109.47275 * 59.99485 * 14 13 8 36 36 H 1.09005 * 109.46961 * 179.97438 * 14 13 8 37 37 H 1.09006 * 109.46779 * 299.99689 * 14 13 8 38 38 H 1.09006 * 109.46970 * 290.00119 * 15 13 8 39 39 H 1.08999 * 109.47221 * 49.99782 * 15 13 8 40 40 H 1.08996 * 109.46942 * 300.00502 * 16 15 13 41 41 H 1.09001 * 109.46836 * 60.00095 * 16 15 13 42 42 H 1.09006 * 109.47647 * 300.00287 * 17 16 15 43 43 H 1.08999 * 109.47231 * 59.99830 * 17 16 15 44 44 H 0.96997 * 120.00503 * 179.97438 * 22 21 19 45 45 H 1.07996 * 120.02705 * 180.27204 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9207 3.6047 0.0011 6 6 3.3017 3.6758 0.0064 7 6 4.0558 2.5172 0.0006 8 6 5.5607 2.5983 0.0011 9 1 5.9754 1.6535 0.3525 10 6 6.0495 2.8721 -1.3979 11 8 6.6914 3.8693 -1.6292 12 8 5.7717 2.0083 -2.3870 13 7 5.9922 3.6839 0.8918 14 6 5.4542 3.4988 2.2462 15 6 7.4569 3.7933 0.9170 16 6 7.8600 5.0760 1.6472 17 6 9.3855 5.1896 1.6741 18 16 9.8624 6.7066 2.5386 19 6 11.6165 6.5860 2.4233 20 1 12.0680 5.7419 1.9233 21 6 12.4179 7.5763 2.9743 22 7 11.8676 8.6058 3.5825 23 14 14.2776 7.4480 2.8528 24 1 14.6791 7.4154 1.4235 25 1 14.8991 8.6226 3.5155 26 1 14.7327 6.2036 3.5233 27 6 3.4310 1.2849 0.0000 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 0.2127 2.3203 0.0014 32 1 1.3338 4.5114 0.0019 33 1 3.7920 4.6381 0.0114 34 1 6.1061 2.2268 -3.2676 35 1 5.8095 2.5517 2.6520 36 1 5.7894 4.3160 2.8850 37 1 4.3649 3.4914 2.2065 38 1 7.8767 2.9320 1.4369 39 1 7.8368 3.8219 -0.1042 40 1 7.4402 5.9372 1.1275 41 1 7.4802 5.0473 2.6685 42 1 9.8050 4.3283 2.1941 43 1 9.7657 5.2180 0.6530 44 1 12.4277 9.2976 3.9679 45 1 4.0206 0.3800 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599647404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:27 Heat of formation + Delta-G solvation = -92.281406 kcal Electronic energy + Delta-G solvation = -26585.363386 eV Core-core repulsion = 22694.912098 eV Total energy + Delta-G solvation = -3890.451288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07976 -40.18110 -38.38082 -37.19088 -36.03514 -33.46019 -32.37745 -31.54770 -30.49643 -28.43793 -27.56038 -26.59087 -25.48198 -23.67226 -22.89982 -22.53028 -20.77694 -20.43395 -18.54993 -17.91992 -17.42779 -16.99218 -16.59425 -16.31089 -16.10486 -15.98456 -15.50932 -14.83002 -14.76484 -14.68374 -14.32148 -13.89011 -13.79962 -13.62095 -13.24858 -13.18874 -12.86577 -12.65476 -12.35834 -12.15628 -11.99031 -11.92360 -11.54948 -11.48111 -11.40057 -11.26906 -11.15677 -11.01234 -10.79057 -10.61467 -10.54834 -9.98308 -9.49945 -9.18651 -8.99966 -8.50870 -8.48177 -8.23414 -6.45828 -6.17328 -3.86775 0.87989 1.16326 2.02356 2.63363 2.89483 3.24911 3.26861 3.31000 3.37191 3.62172 3.94460 4.23295 4.28184 4.44944 4.67262 4.71601 4.73316 4.80413 5.01577 5.04158 5.12696 5.15534 5.18082 5.18835 5.29737 5.32221 5.42174 5.51412 5.63838 5.68708 5.80979 5.89122 5.95047 6.00758 6.13607 6.16058 6.25529 6.37439 6.40580 6.43655 6.68236 6.76431 6.91089 6.99191 7.03866 7.65532 7.75078 8.41890 9.28696 10.90811 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.002008 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.650821 B =13943.710728 C =14422.216667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.201 4.201 5 C -0.084 4.084 6 C -0.122 4.122 7 C -0.046 4.046 8 C 0.137 3.863 9 H 0.086 0.914 10 C 0.483 3.517 11 O -0.481 6.481 12 O -0.515 6.515 13 N -0.519 5.519 14 C 0.020 3.980 15 C 0.044 3.956 16 C -0.087 4.087 17 C -0.112 4.112 18 S -0.131 6.131 19 C -0.516 4.516 20 H 0.071 0.929 21 C 0.071 3.929 22 N -0.870 5.870 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.275 1.275 27 C -0.130 4.130 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.411 0.589 35 H 0.028 0.972 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.267 0.733 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.435 -17.733 -8.925 31.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.077 3.923 4 C -0.220 4.220 5 C -0.102 4.102 6 C -0.140 4.140 7 C -0.047 4.047 8 C 0.028 3.972 9 H 0.104 0.896 10 C 0.324 3.676 11 O -0.366 6.366 12 O -0.327 6.327 13 N -0.245 5.245 14 C -0.128 4.128 15 C -0.084 4.084 16 C -0.126 4.126 17 C -0.261 4.261 18 S 0.097 5.903 19 C -0.664 4.664 20 H 0.089 0.911 21 C -0.138 4.138 22 N -0.506 5.506 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.270 0.730 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.100 -16.315 -8.198 31.039 hybrid contribution 2.240 -1.484 -0.883 2.829 sum -22.859 -17.800 -9.081 30.362 Atomic orbital electron populations 1.23054 0.78346 1.03957 1.01368 1.86069 1.21382 1.26862 1.88861 1.18854 0.92017 0.84221 0.97205 1.21295 1.00043 0.92458 1.08205 1.20979 0.94501 0.97082 0.97651 1.21114 0.93380 0.98930 1.00586 1.19014 0.92335 0.93006 1.00315 1.19919 0.92677 0.96180 0.88456 0.89619 1.22970 0.76809 0.80530 0.87336 1.90747 1.35847 1.27027 1.82970 1.84505 1.74315 1.52050 1.21796 1.61770 1.12118 1.41000 1.09566 1.22555 1.00751 1.01159 0.88297 1.22594 0.84639 0.98060 1.03151 1.21201 0.94411 0.96853 1.00125 1.23218 0.97046 1.02852 1.02964 1.84592 1.07747 1.25146 1.72815 1.22659 0.90136 1.11068 1.42537 0.91071 1.25006 0.99525 0.94593 0.94675 1.70011 1.35816 1.09846 1.34907 0.86236 0.83136 0.77719 0.78503 1.19958 1.20836 1.19999 1.20183 0.91531 0.97797 1.05413 0.92617 0.92643 0.88239 0.85490 0.85415 0.84326 0.72973 0.95298 0.89622 0.90893 0.95078 0.88497 0.90587 0.91782 0.92480 0.92086 0.92312 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.78 10.50 -19.42 -0.20 -2.99 16 3 C 0.12 1.13 6.69 -39.22 -0.26 0.87 16 4 C -0.20 -1.63 9.04 -39.44 -0.36 -1.98 16 5 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 6 C -0.12 -1.22 8.04 -39.56 -0.32 -1.54 16 7 C -0.05 -0.47 3.71 -104.65 -0.39 -0.85 16 8 C 0.14 1.51 2.19 -70.02 -0.15 1.35 16 9 H 0.09 0.83 8.00 -51.93 -0.42 0.42 16 10 C 0.48 5.73 7.25 36.01 0.26 5.99 16 11 O -0.48 -7.29 14.64 -18.75 -0.27 -7.57 16 12 O -0.51 -4.62 13.34 -39.24 -0.52 -5.14 16 13 N -0.52 -6.52 3.76 -237.68 -0.89 -7.41 16 14 C 0.02 0.22 8.93 60.07 0.54 0.75 16 15 C 0.04 0.64 4.56 -3.82 -0.02 0.62 16 16 C -0.09 -1.52 5.15 -26.74 -0.14 -1.66 16 17 C -0.11 -2.37 5.67 37.15 0.21 -2.16 16 18 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 19 C -0.52 -15.18 9.50 30.94 0.29 -14.89 16 20 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 23 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 C -0.13 -1.25 9.61 -39.43 -0.38 -1.63 16 28 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 29 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.10 0.30 8.14 -51.92 -0.42 -0.13 16 31 H 0.13 0.74 6.30 -52.48 -0.33 0.41 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.14 1.52 7.70 -52.48 -0.40 1.11 16 34 H 0.41 2.03 9.10 45.56 0.41 2.45 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 1.00 6.30 -51.93 -0.33 0.67 16 37 H 0.07 0.73 6.10 -51.93 -0.32 0.42 16 38 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.10 1.55 5.21 -51.93 -0.27 1.28 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 1.08 6.47 -51.93 -0.34 0.74 16 42 H 0.06 1.19 8.14 -51.91 -0.42 0.76 16 43 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.13 1.15 8.04 -52.49 -0.42 0.72 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -35.22 385.00 -8.61 -43.82 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.71 Total: 1.25 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -0.21 Total: -13.14 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: -0.16 Total: -33.15 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.00 Total: -15.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.22 -8.61 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599647404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.456 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds