Wall clock time and date at job start Tue Mar 31 2020 22:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46928 * 2 1 4 4 C 1.46498 * 120.00082 * 283.75272 * 3 2 1 5 5 C 1.53010 * 109.47045 * 270.00450 * 4 3 2 6 6 O 1.42898 * 109.46765 * 299.99800 * 5 4 3 7 7 C 1.42901 * 113.99954 * 207.26216 * 6 5 4 8 8 O 1.42900 * 109.47221 * 59.99801 * 5 4 3 9 9 C 1.42901 * 113.99764 * 169.69871 * 8 5 4 10 10 C 1.34778 * 119.99828 * 103.75758 * 3 2 1 11 11 O 1.21550 * 119.99491 * 177.46277 * 10 3 2 12 12 C 1.47852 * 120.00023 * 357.45392 * 10 3 2 13 13 C 1.39671 * 120.10407 * 320.67088 * 12 10 3 14 14 C 1.38041 * 120.04052 * 180.02562 * 13 12 10 15 15 C 1.38184 * 120.24443 * 359.67336 * 14 13 12 16 16 C 1.39184 * 120.19756 * 0.60614 * 15 14 13 17 17 S 1.76202 * 120.01874 * 179.69465 * 16 15 14 18 18 C 1.76196 * 99.99902 * 264.78242 * 17 16 15 19 19 H 1.08003 * 120.00234 * 5.01685 * 18 17 16 20 20 C 1.38733 * 120.00115 * 185.00968 * 18 17 16 21 21 N 1.31624 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47175 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46743 * 120.00737 * 22 20 18 25 25 H 1.48503 * 109.47066 * 240.00419 * 22 20 18 26 26 C 1.38876 * 119.96107 * 359.41915 * 16 15 14 27 27 H 1.09004 * 109.47007 * 70.40366 * 1 2 3 28 28 H 1.09003 * 109.47232 * 190.40402 * 1 2 3 29 29 H 1.09001 * 109.47381 * 310.41136 * 1 2 3 30 30 H 1.09002 * 109.47049 * 239.99921 * 2 1 3 31 31 H 1.09000 * 109.46980 * 119.99876 * 2 1 3 32 32 H 1.09002 * 109.47515 * 29.99744 * 4 3 2 33 33 H 1.09004 * 109.47493 * 150.00580 * 4 3 2 34 34 H 1.08999 * 109.46972 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47325 * 185.66547 * 7 6 5 36 36 H 1.09000 * 109.47271 * 305.66965 * 7 6 5 37 37 H 1.09004 * 109.47087 * 65.67116 * 7 6 5 38 38 H 1.08993 * 109.47259 * 69.85633 * 9 8 5 39 39 H 1.09002 * 109.46657 * 189.86053 * 9 8 5 40 40 H 1.09001 * 109.46726 * 309.85634 * 9 8 5 41 41 H 1.08001 * 119.97882 * 0.02562 * 13 12 10 42 42 H 1.08003 * 119.87862 * 180.02562 * 14 13 12 43 43 H 1.08000 * 119.90181 * 180.31917 * 15 14 13 44 44 H 0.97000 * 119.99867 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.12514 * 180.25606 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9781 2.1724 -1.2323 5 6 3.2851 1.9807 -2.0044 6 8 4.3827 2.4118 -1.1971 7 6 5.5138 2.8610 -1.9460 8 8 3.4475 0.5989 -2.3305 9 6 4.5120 0.3395 -3.2479 10 6 2.5046 1.9240 1.1337 11 8 2.9522 3.0541 1.1231 12 6 2.4934 1.1450 2.3903 13 6 1.4000 0.3337 2.7019 14 6 1.3907 -0.3926 3.8758 15 6 2.4638 -0.3263 4.7438 16 6 3.5561 0.4833 4.4461 17 16 4.9184 0.5705 5.5602 18 6 4.4723 2.0074 6.4771 19 1 3.5218 2.4883 6.2989 20 6 5.3419 2.5211 7.4282 21 7 6.5004 1.9353 7.6452 22 14 4.8685 4.0441 8.4008 23 1 3.5247 4.5077 7.9716 24 1 4.8397 3.7172 9.8492 25 1 5.8648 5.1176 8.1554 26 6 3.5741 1.2181 3.2677 27 1 -0.3633 0.3447 -0.9682 28 1 -0.3634 -1.0108 0.1856 29 1 -0.3634 0.6662 0.7825 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.1409 1.8435 -1.8481 33 1 1.8543 3.2264 -0.9836 34 1 3.2554 2.5697 -2.9210 35 1 6.3380 3.0755 -1.2659 36 1 5.8155 2.0848 -2.6492 37 1 5.2505 3.7656 -2.4943 38 1 5.4678 0.5170 -2.7550 39 1 4.4612 -0.6977 -3.5794 40 1 4.4188 1.0012 -4.1090 41 1 0.5613 0.2746 2.0241 42 1 0.5441 -1.0195 4.1139 43 1 2.4530 -0.9010 5.6582 44 1 7.1086 2.2946 8.3100 45 1 4.4221 1.8440 3.0321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634572195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:24 Heat of formation + Delta-G solvation = -82.622900 kcal Electronic energy + Delta-G solvation = -27805.234967 eV Core-core repulsion = 23915.202504 eV Total energy + Delta-G solvation = -3890.032464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.36040 -39.16012 -37.63148 -36.11606 -35.90455 -32.44574 -32.00726 -30.71399 -30.18097 -29.23633 -26.95089 -26.20026 -25.50623 -23.83797 -23.35255 -22.35130 -21.83513 -19.39276 -18.01046 -17.54277 -17.46751 -16.91232 -16.40744 -16.20036 -15.60144 -15.04552 -14.83259 -14.79054 -14.56772 -14.10148 -13.96304 -13.79559 -13.66546 -13.54721 -13.22504 -12.87957 -12.70888 -12.64850 -12.37128 -12.16642 -11.99537 -11.79993 -11.46346 -11.29731 -11.17016 -11.06827 -11.03243 -10.96998 -10.59773 -10.16126 -9.96598 -9.82289 -9.55686 -9.10361 -8.86349 -8.64140 -8.42390 -7.90261 -6.64270 -6.22775 -3.95756 1.41280 1.78709 2.93884 3.07894 3.24217 3.27896 3.33996 3.47449 3.56557 3.64721 4.13871 4.32345 4.49372 4.67185 4.75020 4.87860 4.89088 4.99327 5.11750 5.13642 5.14254 5.15949 5.17554 5.26064 5.33699 5.39801 5.47311 5.52166 5.54704 5.61510 5.69183 5.75074 5.85792 5.97940 6.09653 6.13045 6.38709 6.51541 6.73164 6.77024 6.80204 6.98717 7.04507 7.31917 7.53414 7.64622 8.40040 8.46186 9.23514 10.83991 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.003240 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.974255 B = 8640.969204 C = 9582.148532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 N -0.601 5.601 4 C 0.137 3.863 5 C 0.224 3.776 6 O -0.367 6.367 7 C 0.017 3.983 8 O -0.387 6.387 9 C 0.023 3.977 10 C 0.569 3.431 11 O -0.519 6.519 12 C -0.144 4.144 13 C -0.108 4.108 14 C -0.142 4.142 15 C -0.061 4.061 16 C -0.105 4.105 17 S -0.038 6.038 18 C -0.516 4.516 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.872 5.872 22 Si 0.920 3.080 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.025 4.025 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.268 0.732 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 -4.582 -22.660 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 N -0.334 5.334 4 C 0.013 3.987 5 C 0.127 3.873 6 O -0.286 6.286 7 C -0.080 4.080 8 O -0.308 6.308 9 C -0.073 4.073 10 C 0.358 3.642 11 O -0.394 6.394 12 C -0.149 4.149 13 C -0.127 4.127 14 C -0.162 4.162 15 C -0.083 4.083 16 C -0.216 4.216 17 S 0.197 5.803 18 C -0.664 4.664 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.507 5.507 22 Si 0.746 3.254 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.046 4.046 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.151 0.849 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.078 0.922 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.975 -4.774 -22.128 24.352 hybrid contribution -0.991 1.866 -0.137 2.117 sum -9.966 -2.909 -22.265 24.567 Atomic orbital electron populations 1.22363 0.96413 1.02533 1.02134 1.21896 0.93621 0.82575 1.04676 1.47553 1.63575 1.13827 1.08442 1.21434 0.93395 0.98322 0.85566 1.23965 0.89259 0.81540 0.92564 1.88281 1.24599 1.82231 1.33528 1.23100 0.89754 0.97825 0.97283 1.88039 1.52138 1.26760 1.63833 1.22953 0.90807 1.01837 0.91704 1.18443 0.76569 0.86162 0.83036 1.90771 1.44333 1.18865 1.85406 1.19823 0.97609 1.01513 0.95975 1.21730 0.97858 0.95556 0.97512 1.21053 0.98941 1.01272 0.94912 1.21895 0.91721 0.96353 0.98285 1.22779 1.01450 0.98540 0.98784 1.83540 1.23234 1.38313 1.35259 1.22897 1.06525 1.13531 1.23403 0.90554 1.24996 0.94364 0.97672 0.96576 1.70002 1.08248 1.39610 1.32867 0.86075 0.78839 0.81337 0.79127 1.19448 1.20536 1.20469 1.21827 0.96597 0.94916 0.91286 0.92401 0.91211 0.91766 0.89872 0.88717 0.88692 0.87900 0.92435 0.89229 0.93674 0.94098 0.93194 0.89608 0.94281 0.84855 0.86047 0.85307 0.92206 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 8.97 37.16 0.33 -1.07 16 2 C 0.10 1.01 5.42 -4.04 -0.02 0.99 16 3 N -0.60 -7.96 2.38 -174.79 -0.42 -8.38 16 4 C 0.14 1.49 5.57 -4.04 -0.02 1.47 16 5 C 0.22 2.48 3.17 37.16 0.12 2.59 16 6 O -0.37 -5.29 9.04 -64.05 -0.58 -5.87 16 7 C 0.02 0.18 10.56 101.05 1.07 1.24 16 8 O -0.39 -4.23 9.08 -59.04 -0.54 -4.77 16 9 C 0.02 0.19 9.80 101.05 0.99 1.18 16 10 C 0.57 10.03 6.88 -12.33 -0.08 9.95 16 11 O -0.52 -10.92 15.60 -6.24 -0.10 -11.02 16 12 C -0.14 -2.63 5.13 -105.00 -0.54 -3.17 16 13 C -0.11 -1.62 7.40 -39.12 -0.29 -1.91 16 14 C -0.14 -2.16 10.02 -39.67 -0.40 -2.56 16 15 C -0.06 -1.15 9.79 -39.25 -0.38 -1.54 16 16 C -0.10 -2.34 5.45 -38.99 -0.21 -2.55 16 17 S -0.04 -1.01 21.41 -107.50 -2.30 -3.31 16 18 C -0.52 -15.03 9.46 30.92 0.29 -14.74 16 19 H 0.08 2.23 7.79 -52.48 -0.41 1.82 16 20 C 0.07 2.09 5.49 -17.46 -0.10 1.99 16 21 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 22 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.02 -0.53 9.38 -38.92 -0.37 -0.90 16 27 H 0.06 0.40 7.78 -51.93 -0.40 -0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.57 6.41 -51.93 -0.33 0.23 16 30 H 0.08 0.84 6.87 -51.93 -0.36 0.49 16 31 H 0.09 1.13 4.99 -51.93 -0.26 0.87 16 32 H 0.09 0.72 7.62 -51.93 -0.40 0.33 16 33 H 0.10 1.20 7.46 -51.93 -0.39 0.82 16 34 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.39 4.77 -51.93 -0.25 0.14 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.44 5.96 -51.93 -0.31 0.13 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.04 0.25 7.97 -51.93 -0.41 -0.17 16 41 H 0.13 1.58 3.54 -52.49 -0.19 1.40 16 42 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 43 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.13 3.08 8.05 -52.49 -0.42 2.66 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -35.43 377.99 -8.33 -43.76 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.20 Total: 1.11 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 0.39 Total: -9.03 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.32 Total: -33.64 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.21 Total: -21.65 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.30 Total: -3.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.43 -8.33 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634572195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.863 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds