Wall clock time and date at job start Tue Mar 31 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46928 * 2 1 4 4 C 1.46498 * 120.00082 * 283.75272 * 3 2 1 5 5 C 1.53010 * 109.47045 * 270.00450 * 4 3 2 6 6 O 1.42898 * 109.46765 * 299.99800 * 5 4 3 7 7 C 1.42901 * 113.99954 * 207.26216 * 6 5 4 8 8 O 1.42900 * 109.47221 * 59.99801 * 5 4 3 9 9 C 1.42901 * 113.99764 * 169.69871 * 8 5 4 10 10 C 1.34778 * 119.99828 * 103.75758 * 3 2 1 11 11 O 1.21550 * 119.99491 * 177.46277 * 10 3 2 12 12 C 1.47852 * 120.00023 * 357.45392 * 10 3 2 13 13 C 1.39671 * 120.10407 * 320.67088 * 12 10 3 14 14 C 1.38041 * 120.04052 * 180.02562 * 13 12 10 15 15 C 1.38184 * 120.24443 * 359.67336 * 14 13 12 16 16 C 1.39184 * 120.19756 * 0.60614 * 15 14 13 17 17 S 1.76202 * 120.01874 * 179.69465 * 16 15 14 18 18 C 1.76196 * 99.99902 * 264.78242 * 17 16 15 19 19 H 1.08003 * 120.00234 * 5.01685 * 18 17 16 20 20 C 1.38733 * 120.00115 * 185.00968 * 18 17 16 21 21 N 1.31624 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47175 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46743 * 120.00737 * 22 20 18 25 25 H 1.48503 * 109.47066 * 240.00419 * 22 20 18 26 26 C 1.38876 * 119.96107 * 359.41915 * 16 15 14 27 27 H 1.09004 * 109.47007 * 70.40366 * 1 2 3 28 28 H 1.09003 * 109.47232 * 190.40402 * 1 2 3 29 29 H 1.09001 * 109.47381 * 310.41136 * 1 2 3 30 30 H 1.09002 * 109.47049 * 239.99921 * 2 1 3 31 31 H 1.09000 * 109.46980 * 119.99876 * 2 1 3 32 32 H 1.09002 * 109.47515 * 29.99744 * 4 3 2 33 33 H 1.09004 * 109.47493 * 150.00580 * 4 3 2 34 34 H 1.08999 * 109.46972 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47325 * 185.66547 * 7 6 5 36 36 H 1.09000 * 109.47271 * 305.66965 * 7 6 5 37 37 H 1.09004 * 109.47087 * 65.67116 * 7 6 5 38 38 H 1.08993 * 109.47259 * 69.85633 * 9 8 5 39 39 H 1.09002 * 109.46657 * 189.86053 * 9 8 5 40 40 H 1.09001 * 109.46726 * 309.85634 * 9 8 5 41 41 H 1.08001 * 119.97882 * 0.02562 * 13 12 10 42 42 H 1.08003 * 119.87862 * 180.02562 * 14 13 12 43 43 H 1.08000 * 119.90181 * 180.31917 * 15 14 13 44 44 H 0.97000 * 119.99867 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.12514 * 180.25606 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9781 2.1724 -1.2323 5 6 3.2851 1.9807 -2.0044 6 8 4.3827 2.4118 -1.1971 7 6 5.5138 2.8610 -1.9460 8 8 3.4475 0.5989 -2.3305 9 6 4.5120 0.3395 -3.2479 10 6 2.5046 1.9240 1.1337 11 8 2.9522 3.0541 1.1231 12 6 2.4934 1.1450 2.3903 13 6 1.4000 0.3337 2.7019 14 6 1.3907 -0.3926 3.8758 15 6 2.4638 -0.3263 4.7438 16 6 3.5561 0.4833 4.4461 17 16 4.9184 0.5705 5.5602 18 6 4.4723 2.0074 6.4771 19 1 3.5218 2.4883 6.2989 20 6 5.3419 2.5211 7.4282 21 7 6.5004 1.9353 7.6452 22 14 4.8685 4.0441 8.4008 23 1 3.5247 4.5077 7.9716 24 1 4.8397 3.7172 9.8492 25 1 5.8648 5.1176 8.1554 26 6 3.5741 1.2181 3.2677 27 1 -0.3633 0.3447 -0.9682 28 1 -0.3634 -1.0108 0.1856 29 1 -0.3634 0.6662 0.7825 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.1409 1.8435 -1.8481 33 1 1.8543 3.2264 -0.9836 34 1 3.2554 2.5697 -2.9210 35 1 6.3380 3.0755 -1.2659 36 1 5.8155 2.0848 -2.6492 37 1 5.2505 3.7656 -2.4943 38 1 5.4678 0.5170 -2.7550 39 1 4.4612 -0.6977 -3.5794 40 1 4.4188 1.0012 -4.1090 41 1 0.5613 0.2746 2.0241 42 1 0.5441 -1.0195 4.1139 43 1 2.4530 -0.9010 5.6582 44 1 7.1086 2.2946 8.3100 45 1 4.4221 1.8440 3.0321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634572195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:23 Heat of formation + Delta-G solvation = -105.543844 kcal Electronic energy + Delta-G solvation = -27806.228894 eV Core-core repulsion = 23915.202504 eV Total energy + Delta-G solvation = -3891.026390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55740 -40.13835 -39.00713 -37.12191 -36.89316 -34.66170 -33.03528 -32.09076 -31.44837 -30.16613 -27.80584 -27.74413 -26.95001 -25.05286 -24.16416 -23.78885 -23.00509 -20.67371 -19.76951 -18.71285 -18.39503 -18.14881 -17.60314 -17.13473 -16.94408 -16.81170 -16.49061 -16.06392 -15.39633 -15.31773 -15.20759 -14.95042 -14.72280 -14.59631 -14.52448 -14.32690 -13.83430 -13.57549 -13.39937 -13.24171 -13.16007 -12.99727 -12.97387 -12.82280 -12.65787 -12.42284 -12.27730 -12.17871 -11.99827 -11.62827 -11.25556 -11.05653 -10.91169 -10.77332 -10.61951 -9.95327 -9.65699 -9.61039 -8.80209 -8.40038 -6.19663 -0.04075 0.27465 1.28430 1.35032 1.44774 1.60560 1.83308 1.95919 2.23377 2.63021 2.78343 2.85226 2.92530 3.40800 3.51180 3.75800 3.94086 3.97566 3.99098 4.17278 4.19890 4.31682 4.35170 4.37393 4.40552 4.43372 4.49317 4.51467 4.62552 4.68376 4.71908 4.73124 4.88813 4.92912 5.00553 5.08150 5.26520 5.32254 5.37878 5.46818 5.51991 5.57531 5.89800 6.04451 6.15411 6.15581 6.37465 7.00329 7.18343 8.67181 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.003240 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.974255 B = 8640.969204 C = 9582.148532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.090 3.910 3 N -0.588 5.588 4 C 0.129 3.871 5 C 0.218 3.782 6 O -0.411 6.411 7 C 0.013 3.987 8 O -0.400 6.400 9 C 0.018 3.982 10 C 0.563 3.437 11 O -0.567 6.567 12 C -0.149 4.149 13 C -0.083 4.083 14 C -0.120 4.120 15 C -0.068 4.068 16 C -0.126 4.126 17 S -0.092 6.092 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.021 3.979 21 N -0.905 5.905 22 Si 0.992 3.008 23 H -0.269 1.269 24 H -0.263 1.263 25 H -0.271 1.271 26 C -0.051 4.051 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.176 0.824 42 H 0.176 0.824 43 H 0.136 0.864 44 H 0.274 0.726 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.911 -5.519 -24.655 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.032 4.032 3 N -0.320 5.320 4 C 0.006 3.994 5 C 0.122 3.878 6 O -0.331 6.331 7 C -0.083 4.083 8 O -0.321 6.321 9 C -0.078 4.078 10 C 0.352 3.648 11 O -0.446 6.446 12 C -0.154 4.154 13 C -0.101 4.101 14 C -0.139 4.139 15 C -0.089 4.089 16 C -0.237 4.237 17 S 0.142 5.858 18 C -0.683 4.683 19 H 0.082 0.918 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.813 3.187 23 H -0.193 1.193 24 H -0.187 1.187 25 H -0.196 1.196 26 C -0.073 4.073 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.193 0.807 42 H 0.193 0.807 43 H 0.154 0.846 44 H 0.083 0.917 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.659 -5.762 -24.169 27.885 hybrid contribution 0.077 2.040 0.264 2.058 sum -12.582 -3.723 -23.905 27.269 Atomic orbital electron populations 1.22323 0.93458 1.03981 1.03076 1.22111 0.95882 0.80715 1.04476 1.47607 1.61680 1.14845 1.07829 1.21758 0.95081 0.97628 0.84894 1.24143 0.88214 0.82093 0.93315 1.88239 1.26192 1.82753 1.35945 1.23202 0.88682 0.99259 0.97147 1.87989 1.52876 1.26581 1.64647 1.23108 0.89521 1.03367 0.91783 1.18438 0.76755 0.85589 0.84057 1.90742 1.46739 1.20911 1.86205 1.19985 0.97408 1.02069 0.95902 1.22228 0.97261 0.92901 0.97676 1.21557 0.98681 1.00413 0.93262 1.22027 0.91635 0.95681 0.99538 1.22461 1.01456 1.01578 0.98241 1.83375 1.27521 1.37913 1.36946 1.23090 1.06381 1.14468 1.24406 0.91832 1.25989 0.94163 1.00884 0.97418 1.70110 1.09246 1.41203 1.33606 0.85011 0.78480 0.77102 0.78073 1.19308 1.18730 1.19648 1.21486 0.97280 0.95848 0.92670 0.90619 0.88830 0.92285 0.88921 0.90153 0.84557 0.89145 0.89516 0.90796 0.91649 0.92410 0.94465 0.88098 0.92059 0.80680 0.80666 0.84639 0.91665 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.97 71.98 0.65 -1.18 16 2 C 0.09 1.61 5.42 86.38 0.47 2.08 16 3 N -0.59 -14.67 2.38 -825.19 -1.96 -16.63 16 4 C 0.13 2.56 5.57 86.38 0.48 3.04 16 5 C 0.22 4.50 3.17 71.99 0.23 4.73 16 6 O -0.41 -12.06 9.04 -121.43 -1.10 -13.16 16 7 C 0.01 0.28 10.56 113.37 1.20 1.47 16 8 O -0.40 -7.89 9.08 -126.21 -1.15 -9.03 16 9 C 0.02 0.25 9.80 113.37 1.11 1.36 16 10 C 0.56 20.11 6.88 86.79 0.60 20.71 16 11 O -0.57 -25.11 15.60 7.18 0.11 -25.00 16 12 C -0.15 -5.47 5.13 -20.11 -0.10 -5.57 16 13 C -0.08 -2.25 7.40 22.57 0.17 -2.08 16 14 C -0.12 -3.23 10.02 22.21 0.22 -3.00 16 15 C -0.07 -2.52 9.79 22.48 0.22 -2.30 16 16 C -0.13 -5.92 5.45 22.65 0.12 -5.79 16 17 S -0.09 -5.24 21.41 -56.49 -1.21 -6.45 16 18 C -0.54 -32.84 9.46 67.94 0.64 -32.20 16 19 H 0.06 3.91 7.79 -2.91 -0.02 3.89 16 20 C 0.02 1.23 5.49 84.84 0.47 1.69 16 21 N -0.91 -55.88 13.22 21.64 0.29 -55.59 16 22 Si 0.99 46.35 29.55 68.60 2.03 48.37 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.05 -2.35 9.38 22.70 0.21 -2.14 16 27 H 0.07 0.61 7.78 -2.38 -0.02 0.59 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.73 6.41 -2.39 -0.02 0.71 16 30 H 0.09 1.56 6.87 -2.39 -0.02 1.54 16 31 H 0.08 1.68 4.99 -2.39 -0.01 1.67 16 32 H 0.14 1.52 7.62 -2.39 -0.02 1.50 16 33 H 0.09 2.05 7.46 -2.38 -0.02 2.03 16 34 H 0.09 1.25 7.69 -2.39 -0.02 1.23 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.09 4.77 -2.39 -0.01 1.08 16 37 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.04 0.62 5.96 -2.39 -0.01 0.60 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 0.59 7.97 -2.39 -0.02 0.57 16 41 H 0.18 3.30 3.54 -2.91 -0.01 3.29 16 42 H 0.18 2.97 8.06 -2.91 -0.02 2.94 16 43 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 44 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.09 4.89 8.05 -2.91 -0.02 4.87 16 Total: -1.00 -84.86 377.99 4.70 -80.17 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.01 Total: 16.51 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 6.68 Total: -19.18 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.68 Total: -72.22 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -2.13 Total: -47.19 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -1.21 Total: -6.45 kcal Total: -84.86 4.70 -80.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634572195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.378 kcal (2) G-P(sol) polarization free energy of solvation -84.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds