Wall clock time and date at job start Tue Mar 31 2020 22:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47332 * 2 1 4 4 C 1.36037 * 117.00301 * 179.97438 * 3 2 1 5 5 C 1.38801 * 119.89771 * 359.97438 * 4 3 2 6 6 C 1.38119 * 120.41080 * 179.97438 * 5 4 3 7 7 C 1.38708 * 120.19745 * 0.02562 * 6 5 4 8 8 N 1.39435 * 120.10566 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99799 * 34.75568 * 8 7 6 10 10 O 1.21284 * 119.99789 * 355.49689 * 9 8 7 11 11 C 1.50699 * 119.99899 * 175.49549 * 9 8 7 12 12 H 1.08997 * 109.47295 * 300.00177 * 11 9 8 13 13 C 1.53004 * 109.47012 * 60.00182 * 11 9 8 14 14 C 1.50695 * 109.47261 * 179.97438 * 11 9 8 15 15 H 1.08006 * 120.00204 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00323 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00275 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99848 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.46895 * 89.99865 * 18 16 14 20 20 H 1.48494 * 109.47306 * 210.00070 * 18 16 14 21 21 H 1.48503 * 109.46826 * 330.00125 * 18 16 14 22 22 C 1.40378 * 119.79298 * 0.27188 * 7 6 5 23 23 C 1.47239 * 120.20179 * 179.70510 * 22 7 6 24 24 O 1.21531 * 119.99924 * 90.00313 * 23 22 7 25 25 O 1.34771 * 120.00083 * 270.00174 * 23 22 7 26 26 C 1.45199 * 116.99924 * 180.02562 * 25 23 22 27 27 C 1.38560 * 119.89760 * 179.97438 * 4 3 2 28 28 F 1.35099 * 120.10588 * 0.02562 * 27 4 3 29 29 H 1.09003 * 109.47295 * 300.00440 * 1 2 3 30 30 H 1.09001 * 109.47059 * 60.00154 * 1 2 3 31 31 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47295 * 239.99560 * 2 1 3 33 33 H 1.09001 * 109.47059 * 119.99846 * 2 1 3 34 34 H 1.07999 * 119.78838 * 359.95787 * 5 4 3 35 35 H 1.08001 * 119.90085 * 179.97438 * 6 5 4 36 36 H 0.97000 * 119.99808 * 214.75816 * 8 7 6 37 37 H 1.08997 * 109.47095 * 59.99873 * 13 11 9 38 38 H 1.09006 * 109.46657 * 299.99899 * 13 11 9 39 39 H 1.08995 * 109.46957 * 180.02562 * 13 11 9 40 40 H 0.96999 * 120.00086 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47211 * 180.02562 * 26 25 23 42 42 H 1.09011 * 109.46895 * 299.99687 * 26 25 23 43 43 H 1.08999 * 109.47726 * 59.99698 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3550 1.5255 0.0005 5 6 4.1986 0.4232 0.0016 6 6 5.5694 0.5920 0.0016 7 6 6.1154 1.8671 0.0011 8 7 7.4996 2.0352 0.0006 9 6 8.2839 1.1643 -0.6648 10 8 7.7940 0.1894 -1.1945 11 6 9.7696 1.4019 -0.7508 12 1 9.9571 2.3554 -1.2444 13 6 10.3637 1.4317 0.6589 14 6 10.4110 0.2913 -1.5421 15 1 9.8035 -0.5066 -1.9432 16 6 11.7733 0.2938 -1.7543 17 7 12.3330 -0.6752 -2.4453 18 14 12.8240 1.6741 -1.0613 19 1 13.2872 1.3074 0.3011 20 1 13.9996 1.8914 -1.9421 21 1 12.0202 2.9209 -0.9920 22 6 5.2701 2.9878 0.0064 23 6 5.8400 4.3454 0.0124 24 8 6.0750 4.9105 -1.0375 25 8 6.1011 4.9614 1.1824 26 6 6.6618 6.2989 1.1123 27 6 3.8823 2.8068 0.0000 28 9 3.0594 3.8783 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7803 -0.5725 0.0027 35 1 6.2182 -0.2715 0.0029 36 1 7.8980 2.7789 0.4792 37 1 10.1761 0.4782 1.1525 38 1 9.8998 2.2348 1.2317 39 1 11.4381 1.6040 0.5967 40 1 13.2914 -0.6732 -2.5949 41 1 6.8238 6.6783 2.1212 42 1 7.6124 6.2670 0.5796 43 1 5.9709 6.9554 0.5835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647650080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:02 Heat of formation + Delta-G solvation = -164.204376 kcal Electronic energy + Delta-G solvation = -29890.735145 eV Core-core repulsion = 25430.951867 eV Total energy + Delta-G solvation = -4459.783278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.04028 -41.04195 -40.09505 -39.52846 -37.47136 -36.51720 -34.32112 -34.02455 -32.04656 -31.49715 -31.30824 -28.73414 -27.88248 -25.27952 -25.06887 -23.91148 -23.18603 -22.18294 -21.03589 -19.83023 -18.94193 -18.04873 -17.62483 -17.31896 -16.89126 -16.81743 -16.55619 -16.14682 -16.04063 -15.53930 -15.39045 -14.91966 -14.67519 -14.37725 -13.98761 -13.55274 -13.53885 -13.36807 -13.18690 -13.07867 -12.81356 -12.63310 -12.53571 -12.42260 -12.30760 -12.07494 -11.76226 -11.44791 -11.23383 -11.09229 -11.00395 -10.77026 -10.72910 -10.42148 -9.87238 -9.73943 -9.24440 -9.22615 -8.95966 -8.67405 -7.86847 -6.14633 -4.16605 0.60892 1.03104 1.79901 2.37278 2.88248 3.02894 3.16292 3.17081 3.24758 3.30955 3.46437 3.96883 4.29334 4.40504 4.60372 4.62002 4.66442 4.86110 4.91428 4.91776 4.96845 5.02882 5.13135 5.15536 5.28703 5.34600 5.47424 5.50794 5.68802 5.73835 5.91214 5.94620 5.99199 6.08977 6.11730 6.21339 6.27283 6.56265 6.70094 6.99823 7.06820 7.33346 7.43409 7.66267 8.39552 8.63939 9.02363 9.42742 10.97885 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003500 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.109568 B = 7997.141761 C = 9778.662447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.309 6.309 4 C 0.075 3.925 5 C -0.136 4.136 6 C -0.093 4.093 7 C 0.201 3.799 8 N -0.685 5.685 9 C 0.533 3.467 10 O -0.501 6.501 11 C -0.001 4.001 12 H 0.058 0.942 13 C -0.148 4.148 14 C -0.511 4.511 15 H 0.096 0.904 16 C 0.074 3.926 17 N -0.891 5.891 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.267 1.267 22 C -0.149 4.149 23 C 0.520 3.480 24 O -0.476 6.476 25 O -0.350 6.350 26 C 0.032 3.968 27 C 0.125 3.875 28 F -0.123 7.123 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.408 0.592 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.054 0.946 40 H 0.266 0.734 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.657 7.181 10.888 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.223 6.223 4 C 0.028 3.972 5 C -0.155 4.155 6 C -0.113 4.113 7 C 0.103 3.897 8 N -0.331 5.331 9 C 0.323 3.677 10 O -0.372 6.372 11 C -0.023 4.023 12 H 0.076 0.924 13 C -0.206 4.206 14 C -0.549 4.549 15 H 0.114 0.886 16 C -0.129 4.129 17 N -0.529 5.529 18 Si 0.712 3.288 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.192 1.192 22 C -0.154 4.154 23 C 0.361 3.639 24 O -0.361 6.361 25 O -0.266 6.266 26 C -0.062 4.062 27 C 0.104 3.896 28 F -0.102 7.102 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.165 0.835 35 H 0.181 0.819 36 H 0.244 0.756 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.824 6.758 10.054 22.386 hybrid contribution 0.913 1.333 0.481 1.685 sum -17.912 8.090 10.535 22.299 Atomic orbital electron populations 1.21770 0.92532 1.02935 1.03617 1.22879 0.96051 0.81553 1.01853 1.86124 1.17294 1.29720 1.89168 1.18508 0.83859 0.91922 1.02919 1.21239 0.93339 0.98025 1.02906 1.21275 0.94599 0.96904 0.98545 1.17328 0.83875 0.91395 0.97073 1.44025 1.03213 1.32450 1.53456 1.21697 0.90229 0.80872 0.74899 1.90579 1.75265 1.27645 1.43730 1.19365 0.86186 1.01077 0.95664 0.92429 1.22168 1.00703 1.00695 0.97018 1.20863 0.93015 1.08128 1.32898 0.88649 1.24950 0.97596 0.95548 0.94776 1.69865 1.11403 1.32014 1.39589 0.86942 0.80222 0.83235 0.78378 1.20329 1.22105 1.19212 1.18534 0.91463 0.90612 1.14804 1.20696 0.75221 0.85656 0.82328 1.90919 1.47122 1.65309 1.32783 1.86681 1.74758 1.31805 1.33397 1.23389 0.98935 0.79734 1.04143 1.16229 0.85129 0.81595 1.06633 1.91517 1.71212 1.53520 1.93913 0.91491 0.91438 0.90193 0.91544 0.91624 0.83495 0.81858 0.75568 0.91920 0.94794 0.92801 0.92375 0.87632 0.91333 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.31 -3.69 9.99 -19.86 -0.20 -3.89 16 4 C 0.07 0.98 6.68 -39.25 -0.26 0.72 16 5 C -0.14 -1.64 9.02 -39.42 -0.36 -2.00 16 6 C -0.09 -1.37 8.67 -39.45 -0.34 -1.71 16 7 C 0.20 3.19 6.32 -83.42 -0.53 2.67 16 8 N -0.69 -11.44 4.95 -9.66 -0.05 -11.49 16 9 C 0.53 11.02 6.99 -10.99 -0.08 10.94 16 10 O -0.50 -11.69 12.87 5.55 0.07 -11.62 16 11 C 0.00 -0.03 2.24 -92.92 -0.21 -0.24 16 12 H 0.06 1.27 7.20 -51.93 -0.37 0.90 16 13 C -0.15 -2.85 8.57 37.16 0.32 -2.53 16 14 C -0.51 -14.14 8.95 -34.44 -0.31 -14.45 16 15 H 0.10 2.99 7.00 -52.48 -0.37 2.62 16 16 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 17 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 18 Si 0.88 20.63 24.37 -169.99 -4.14 16.48 16 19 H -0.28 -6.20 6.87 56.52 0.39 -5.81 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -5.82 6.53 56.52 0.37 -5.45 16 22 C -0.15 -2.30 5.77 -104.79 -0.60 -2.90 16 23 C 0.52 8.07 6.09 34.39 0.21 8.28 16 24 O -0.48 -8.53 16.90 -19.29 -0.33 -8.86 16 25 O -0.35 -4.49 10.58 -40.69 -0.43 -4.92 16 26 C 0.03 0.29 10.57 101.05 1.07 1.36 16 27 C 0.12 1.85 7.30 -38.82 -0.28 1.57 16 28 F -0.12 -1.88 16.67 2.25 0.04 -1.84 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 33 H 0.07 0.43 7.65 -51.93 -0.40 0.03 16 34 H 0.15 1.32 6.26 -52.49 -0.33 0.99 16 35 H 0.16 2.59 6.19 -52.49 -0.32 2.27 16 36 H 0.41 5.87 7.46 -40.82 -0.30 5.57 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.51 7.47 -51.93 -0.39 0.12 16 39 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -34.00 364.58 -4.85 -38.84 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.19 Total: 4.07 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.88 Total: 3.72 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.73 Total: -37.49 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.88 Total: -29.29 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.14 Total: 16.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.00 -4.85 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647650080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.362 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds